4LEDA

The crystal structure of pyocin l1 bound to d-rhamnose at 2.37 angstroms
Total Genus 65
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
65
sequence length
254
structure length
254
Chain Sequence
ASSLAPRQVIRDGQFITSPNGKYKLVMQADGNLVLYEDGTKPIWNTTPVGPGAKAVMEFNLNLYNKAGQVAWSSNVYTAYLFEEFKDEAYLNLQDDGDFGIFSDEAKWGSIVLSRPEVGVKNKIIPTGTVMVPGTEYINGNYRLAFQGDGNLVIYQINPQVVIWATYTMGADRAVVQEDGNFVIYKGTTALWHTHTATGMPAYLKFTNTGKLFLSQPTLLWTLKRGSLSKPPKVIPGQHGPLDTTPIWSWPHDY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Sugar binding protein
molecule keywords Pyocin L1
publication title Lectin-Like Bacteriocins from Pseudomonas spp. Utilise D-Rhamnose Containing Lipopolysaccharide as a Cellular Receptor.
pubmed doi rcsb
source organism Pseudomonas aeruginosa
total genus 65
structure length 254
sequence length 254
chains with identical sequence B
ec nomenclature
pdb deposition date 2013-06-25
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.90.10.20 Mainly Beta Orthogonal Prism Agglutinin, subunit A Agglutinin, subunit A 4ledA02
2.90.10.30 Mainly Beta Orthogonal Prism Agglutinin, subunit A Agglutinin, subunit A 4ledA01
4OITA 4OIZA 4GC1A 4GC2A 4LE7A 4LEAA 4LEDA 3M7HA 4OKCA 3M7JA
chains in the Genus database with same CATH superfamily
1BWUA 4OITA 3R0EA 1XD6A 4LE7A 5D5GA 1XD5A 3MEZA 5T20A 3A0EA 3R0EB 1B2PA 5D5GB 4PDTA 5D9ZA 1BWUP 1BWUQ 5T1XA 3MEZB 5T20B 1NPLA 4GC1A 4H3OA 5J76A 1KJ1D 4LEAA 1DLPA 3A0CA 4LEDA 2D04A 3M7HA 5D9ZB 1NIVA 1MSAA 2DPFA 1JPCA 4OIZA 5T1XB 1KJ1A 1BWUD 4GC2A 5J76B 3DZWA 4TKCA 3A0DA 2D04B 4OKCA 3M7JA
chains in the Genus database with same CATH topology
4OITA 4OIZA 4GC1A 4GC2A 4LE7A 4LEAA 4LEDA 3M7HA 4OKCA 3M7JA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4OIT A;  4OIZ A;  4GC1 A;  4GC2 A;  4LE7 A;  4LEA A;  4LED A;  3M7H A;  4OKC A;  3M7J A; 
#chains in the Genus database with same CATH topology
 1BWU A;  4OIT A;  3R0E A;  1XD6 A;  4LE7 A;  5D5G A;  1XD5 A;  3MEZ A;  5T20 A;  3A0E A;  3R0E B;  1B2P A;  5D5G B;  4PDT A;  5D9Z A;  1BWU P;  1BWU Q;  5T1X A;  3MEZ B;  5T20 B;  1NPL A;  4GC1 A;  4H3O A;  5J76 A;  1KJ1 D;  4LEA A;  1DLP A;  3A0C A;  4LED A;  2D04 A;  3M7H A;  5D9Z B;  1NIV A;  1MSA A;  2DPF A;  1JPC A;  4OIZ A;  5T1X B;  1KJ1 A;  1BWU D;  4GC2 A;  5J76 B;  3DZW A;  4TKC A;  3A0D A;  2D04 B;  4OKC A;  3M7J A; 
#chains in the Genus database with same CATH homology
 4OIT A;  4OIZ A;  4GC1 A;  4GC2 A;  4LE7 A;  4LEA A;  4LED A;  3M7H A;  4OKC A;  3M7J A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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