4LL2A

Crystal structure of plant lectin with two metal binding sites from cicer arietinum at 2.6 angstrom resolution
Total Genus 47
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
47
sequence length
224
structure length
224
Chain Sequence
GYINAAFRSSRNNEAYLFINDKYVLLDYAPGTSNDKVLYGPSFVRDGYKSLAKTIFGTYGIDCSFDTEYNEAFIFYENFCARIDYAPHSDKDKIISGPKKIADMFPFFKGTVFENGIDAAFRSTKGKEVYLFKGDKYARIDYLTNRLVQNIKSISDGFPCLRGTIFEAGMDSAFASHKTNEAYLFKGEYYARINFTPGSTNDIMGGVKKTLDYWPSLRGIIPLE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Plant protein
molecule keywords Lectin
publication title Crystal structure plant lectinwith two metal binding sites from cicer arietinum at 2.6 angstrom resolution
rcsb
total genus 47
structure length 224
sequence length 224
chains with identical sequence B
ec nomenclature
pdb deposition date 2013-07-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00045 Hemopexin Hemopexin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.110.10.10 Mainly Beta 4 Propeller Hemopexin Hemopexin-like domain 4ll2A00
3C7XA 2JXYA 1FBLA 1RTGA 4YEHA 2MQSA 1PEXA 1SU3A 3V6NA 3BA0A 3OYOA 1GXDA 1CK7A 4FVLA 2CLTA 4LL2A 1GENA 4HSDA 3LP9A 1ITVA 4OEIA 4RT6B 4G0DA 4AUOA 1QJSA 4FU4A 3S18A 1QHUA 1HXNA
chains in the Genus database with same CATH superfamily
3C7XA 2JXYA 1FBLA 1RTGA 4YEHA 2MQSA 1PEXA 1SU3A 3V6NA 3BA0A 3OYOA 1GXDA 1CK7A 4FVLA 2CLTA 4LL2A 1GENA 4HSDA 3LP9A 1ITVA 4OEIA 4RT6B 4G0DA 4AUOA 1QJSA 4FU4A 3S18A 1QHUA 1HXNA
chains in the Genus database with same CATH topology
3C7XA 2JXYA 1FBLA 1RTGA 4YEHA 2MQSA 1PEXA 1SU3A 3V6NA 3BA0A 3OYOA 1GXDA 1CK7A 4FVLA 2CLTA 4LL2A 1GENA 4HSDA 3LP9A 1ITVA 4OEIA 4RT6B 4G0DA 4AUOA 1QJSA 4FU4A 3S18A 1QHUA 1HXNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3C7X A;  2JXY A;  1FBL A;  1RTG A;  4YEH A;  2MQS A;  1PEX A;  1SU3 A;  3V6N A;  3BA0 A;  3OYO A;  1GXD A;  1CK7 A;  4FVL A;  2CLT A;  4LL2 A;  1GEN A;  4HSD A;  3LP9 A;  1ITV A;  4OEI A;  4RT6 B;  4G0D A;  4AUO A;  1QJS A;  4FU4 A;  3S18 A;  1QHU A;  1HXN A; 
#chains in the Genus database with same CATH topology
 3C7X A;  2JXY A;  1FBL A;  1RTG A;  4YEH A;  2MQS A;  1PEX A;  1SU3 A;  3V6N A;  3BA0 A;  3OYO A;  1GXD A;  1CK7 A;  4FVL A;  2CLT A;  4LL2 A;  1GEN A;  4HSD A;  3LP9 A;  1ITV A;  4OEI A;  4RT6 B;  4G0D A;  4AUO A;  1QJS A;  4FU4 A;  3S18 A;  1QHU A;  1HXN A; 
#chains in the Genus database with same CATH homology
 3C7X A;  2JXY A;  1FBL A;  1RTG A;  4YEH A;  2MQS A;  1PEX A;  1SU3 A;  3V6N A;  3BA0 A;  3OYO A;  1GXD A;  1CK7 A;  4FVL A;  2CLT A;  4LL2 A;  1GEN A;  4HSD A;  3LP9 A;  1ITV A;  4OEI A;  4RT6 B;  4G0D A;  4AUO A;  1QJS A;  4FU4 A;  3S18 A;  1QHU A;  1HXN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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