4MCDA

Hintrmd in complex with 5-phenylthieno[2,3-d]pyrimidin-4(3h)-one
Total Genus 69
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
69
Knots found
sequence length
246
structure length
237
Chain Sequence
MWIGVISLFPEMFKAITEFGVTGRAVKHNLLKVECWNPRDFTFDKHKTVDDRPYGGGPGMLMMVQPLRDAIHTAKAAAGEGAKVIYLSPQGRKLDQGGVTELAQNQKLILVCGRYEGIDERLIQTEIDEEWSIGDYVLTGGELPAMTLIDAVARFIPGVLSFADGLLDCPHYTRPEVLEGLTVPPVLMSGHHEEIRKWRLKQSLQRTWLRRPELLEGLALTDEQRKLLKEAQAEHNS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase/transferase inhibitor
molecule keywords tRNA (guanine-N(1)-)-methyltransferase
publication title Selective Inhibitors of Bacterial t-RNA-(N(1)G37) Methyltransferase (TrmD) That Demonstrate Novel Ordering of the Lid Domain.
pubmed doi rcsb
source organism Haemophilus influenzae rd kw20
total genus 69
structure length 237
sequence length 246
other databases KnotProt 2.0: K +31
ec nomenclature ec 2.1.1.228: tRNA (guanine(37)-N(1))-methyltransferase.
pdb deposition date 2013-08-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01746 tRNA_m1G_MT tRNA (Guanine-1)-methyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1270.20 Mainly Alpha Orthogonal Bundle Trp Operon Repressor; Chain A tRNA(m1g37)methyltransferase, domain 2 4mcdA02
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 4mcdA01
4YQ7A 3AI9X 3NK7A 4YQ9A 2EGVA 4YQKA 4YQJA 4X3MA 1TO0A 4KDZA 4H3ZA 1X7OA 3IC6A 3QUVA 3KY7A 4YQ2A 4H3YA 4YVJA 1UAMA 4JALA 3N4KA 3OINA 4MCDA 3BBHA 1UALA 4YQ0A 1ZJRA 3E5YA 3N4JA 4YVIA 3KTYA 5GM8A 1K3RA 4YQLA 2V3KA 1UAKA 2Z0YA 2V3JA 4YQRA 1GZ0A 5GMBA 4YQCA 4YQIA 1V6ZA 4YQGA 4YQAA 2EGWA 3O7BA 3L8UA 4MCBA 3IEFA 4E8BA 3AXZA 4YQ4A 1P9PA 3GYQA 4YVGA 4YQ5A 3AIAA 3DCMX 1VHKA 4YQ6A 4YQPA 3BBDA 4YQNA 4MCCA 1Z85A 1X7PA 3ONPA 5GMCA 2O3AA 4L69A 4XBOA 4RG1A 4CNFA 4X3LA 1V2XA 4YVHA 4YPWA 5FAIA 1UAJA 4YQBA 4YPZA 4YQOA 4YQSA 3KW2A 3NK6A 4YQ1A 1O6DA 3OIJA 1NXZA 4YQQA 4YQ3A 4YQDA 2QWVA 4YQ8A 4YPXA 3KNUA 2CX8A 3ILKA 5CO4A 4YVKA 4JAKA 4CNEA 1OY5A 2YY8A 2HA8A 2I6DA 1VH0A 1VHYA 4PZKA 2QMMA 3OIIA 5D9FA 4KGNA 4YPYA 1J85A 1MXIA 4CNGA 4CNDA 4IG6A 1IPAA 4FAKA 4J3CA 4YQTA 3BBEA 1NS5A
chains in the Genus database with same CATH superfamily
4YQ7A 3AI9X 1WRTR 3G1CA 3NK7A 4YQ9A 4FMWA 2EGVA 4YQKA 4JWHA 4YQJA 4X3MA 1TO0A 4KDZA 4H3ZA 1X7OA 3IC6A 3QUVA 3KY7A 4YQ2A 4H3YA 4YVJA 1UAMA 4JALA 3N4KA 3OINA 4MCDA 3BBHA 1UALA 4YQ0A 1ZJRA 3E5YA 3N4JA 4JWFA 4YVIA 3KTYA 5GM8A 1K3RA 2XDIA 4YQLA 2V3KA 1UAKA 2Z0YA 3SSXN 2V3JA 4YQRA 1GZ0A 5GMBA 4YQCA 1TRRA 1RCSA 4YQIA 1V6ZA 4YQGA 4YQAA 2EGWA 3O7BA 3L8UA 4MCBA 3IEFA 4E8BA 3AXZA 4YQ4A 1P9PA 3GYQA 4YVGA 1MI7R 4YQ5A 3AIAA 3DCMX 1VHKA 4YQ6A 4YQPA 3BBDA 1CO0A 4YQNA 4MCCA 1Z85A 1X7PA 3ONPA 5GMCA 2O3AA 4L69A 4XBOA 4RG1A 4CNFA 4X3LA 1V2XA 4YVHA 1WRPR 4YPWA 5FAIA 1UAJA 4YQBA 4YPZA 4YQOA 4YQSA 3KW2A 3NK6A 4YQ1A 1ZT9A 1O6DA 3OIJA 3FRWA 1NXZA 3KORA 1WRSR 4YQQA 4YQ3A 4YQDA 2QWVA 4YQ8A 4YPXA 3WRPA 3KNUA 2CX8A 3ILKA 5CO4A 4YVKA 4JAKA 4CNEA 1OY5A 2YY8A 2HA8A 2I6DA 1VH0A 1VHYA 4PZKA 2QMMA 3OIIA 2OZ9R 5D9FA 4JWGA 3SSWN 4KGNA 4YPYA 1J85A 1MXIA 4CNGA 4CNDA 4IG6A 4JWJA 1IPAA 4FAKA 4J3CA 1JHGA 4YQTA 3BBEA 1TROA 1NS5A
chains in the Genus database with same CATH topology
4YQ7A 3AI9X 3NK7A 4FMWA 4YQ9A 2EGVA 4YQKA 4JWHA 4YQJA 4X3MA 1TO0A 4KDZA 4H3ZA 1X7OA 3IC6A 3QUVA 3KY7A 4YQ2A 4H3YA 4YVJA 1UAMA 4JALA 3N4KA 3OINA 4MCDA 3BBHA 1UALA 4YQ0A 1ZJRA 3E5YA 3N4JA 4JWFA 4YVIA 3KTYA 5GM8A 1K3RA 4YQLA 2V3KA 1UAKA 2Z0YA 2V3JA 4YQRA 1GZ0A 5GMBA 4YQCA 4YQIA 1V6ZA 4YQGA 4YQAA 2EGWA 3O7BA 3L8UA 4MCBA 3IEFA 4E8BA 3AXZA 4YQ4A 1P9PA 3GYQA 4YVGA 4YQ5A 3AIAA 3DCMX 1VHKA 4YQ6A 4YQPA 3BBDA 4YQNA 4MCCA 1Z85A 1X7PA 3ONPA 5GMCA 2O3AA 4L69A 4XBOA 4RG1A 4CNFA 4X3LA 1V2XA 4YVHA 4YPWA 5FAIA 1UAJA 4YQBA 4YPZA 4YQOA 4YQSA 3KW2A 3NK6A 4YQ1A 1O6DA 3OIJA 1NXZA 4YQQA 4YQ3A 4YQDA 2QWVA 4YQ8A 4YPXA 3KNUA 2CX8A 3ILKA 5CO4A 4YVKA 4JAKA 4CNEA 1OY5A 2YY8A 2HA8A 2I6DA 1VH0A 1VHYA 4PZKA 2QMMA 3OIIA 5D9FA 4JWGA 4KGNA 4YPYA 1J85A 1MXIA 4CNGA 4CNDA 4IG6A 4JWJA 1IPAA 4FAKA 4J3CA 4YQTA 3BBEA 1NS5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4YQ7 A;  3AI9 X;  3NK7 A;  4YQ9 A;  2EGV A;  4YQK A;  4YQJ A;  4X3M A;  1TO0 A;  4KDZ A;  4H3Z A;  1X7O A;  3IC6 A;  3QUV A;  3KY7 A;  4YQ2 A;  4H3Y A;  4YVJ A;  1UAM A;  4JAL A;  3N4K A;  3OIN A;  4MCD A;  3BBH A;  1UAL A;  4YQ0 A;  1ZJR A;  3E5Y A;  3N4J A;  4YVI A;  3KTY A;  5GM8 A;  1K3R A;  4YQL A;  2V3K A;  1UAK A;  2Z0Y A;  2V3J A;  4YQR A;  1GZ0 A;  5GMB A;  4YQC A;  4YQI A;  1V6Z A;  4YQG A;  4YQA A;  2EGW A;  3O7B A;  3L8U A;  4MCB A;  3IEF A;  4E8B A;  3AXZ A;  4YQ4 A;  1P9P A;  3GYQ A;  4YVG A;  4YQ5 A;  3AIA A;  3DCM X;  1VHK A;  4YQ6 A;  4YQP A;  3BBD A;  4YQN A;  4MCC A;  1Z85 A;  1X7P A;  3ONP A;  5GMC A;  2O3A A;  4L69 A;  4XBO A;  4RG1 A;  4CNF A;  4X3L A;  1V2X A;  4YVH A;  4YPW A;  5FAI A;  1UAJ A;  4YQB A;  4YPZ A;  4YQO A;  4YQS A;  3KW2 A;  3NK6 A;  4YQ1 A;  1O6D A;  3OIJ A;  1NXZ A;  4YQQ A;  4YQ3 A;  4YQD A;  2QWV A;  4YQ8 A;  4YPX A;  3KNU A;  2CX8 A;  3ILK A;  5CO4 A;  4YVK A;  4JAK A;  4CNE A;  1OY5 A;  2YY8 A;  2HA8 A;  2I6D A;  1VH0 A;  1VHY A;  4PZK A;  2QMM A;  3OII A;  5D9F A;  4KGN A;  4YPY A;  1J85 A;  1MXI A;  4CNG A;  4CND A;  4IG6 A;  1IPA A;  4FAK A;  4J3C A;  4YQT A;  3BBE A;  1NS5 A; 
#chains in the Genus database with same CATH topology
 4YQ7 A;  3AI9 X;  1WRT R;  3G1C A;  3NK7 A;  4YQ9 A;  4FMW A;  2EGV A;  4YQK A;  4JWH A;  4YQJ A;  4X3M A;  1TO0 A;  4KDZ A;  4H3Z A;  1X7O A;  3IC6 A;  3QUV A;  3KY7 A;  4YQ2 A;  4H3Y A;  4YVJ A;  1UAM A;  4JAL A;  3N4K A;  3OIN A;  4MCD A;  3BBH A;  1UAL A;  4YQ0 A;  1ZJR A;  3E5Y A;  3N4J A;  4JWF A;  4YVI A;  3KTY A;  5GM8 A;  1K3R A;  2XDI A;  4YQL A;  2V3K A;  1UAK A;  2Z0Y A;  3SSX N;  2V3J A;  4YQR A;  1GZ0 A;  5GMB A;  4YQC A;  1TRR A;  1RCS A;  4YQI A;  1V6Z A;  4YQG A;  4YQA A;  2EGW A;  3O7B A;  3L8U A;  4MCB A;  3IEF A;  4E8B A;  3AXZ A;  4YQ4 A;  1P9P A;  3GYQ A;  4YVG A;  1MI7 R;  4YQ5 A;  3AIA A;  3DCM X;  1VHK A;  4YQ6 A;  4YQP A;  3BBD A;  1CO0 A;  4YQN A;  4MCC A;  1Z85 A;  1X7P A;  3ONP A;  5GMC A;  2O3A A;  4L69 A;  4XBO A;  4RG1 A;  4CNF A;  4X3L A;  1V2X A;  4YVH A;  1WRP R;  4YPW A;  5FAI A;  1UAJ A;  4YQB A;  4YPZ A;  4YQO A;  4YQS A;  3KW2 A;  3NK6 A;  4YQ1 A;  1ZT9 A;  1O6D A;  3OIJ A;  3FRW A;  1NXZ A;  3KOR A;  1WRS R;  4YQQ A;  4YQ3 A;  4YQD A;  2QWV A;  4YQ8 A;  4YPX A;  3WRP A;  3KNU A;  2CX8 A;  3ILK A;  5CO4 A;  4YVK A;  4JAK A;  4CNE A;  1OY5 A;  2YY8 A;  2HA8 A;  2I6D A;  1VH0 A;  1VHY A;  4PZK A;  2QMM A;  3OII A;  2OZ9 R;  5D9F A;  4JWG A;  3SSW N;  4KGN A;  4YPY A;  1J85 A;  1MXI A;  4CNG A;  4CND A;  4IG6 A;  4JWJ A;  1IPA A;  4FAK A;  4J3C A;  1JHG A;  4YQT A;  3BBE A;  1TRO A;  1NS5 A; 
#chains in the Genus database with same CATH homology
 4YQ7 A;  3AI9 X;  3NK7 A;  4FMW A;  4YQ9 A;  2EGV A;  4YQK A;  4JWH A;  4YQJ A;  4X3M A;  1TO0 A;  4KDZ A;  4H3Z A;  1X7O A;  3IC6 A;  3QUV A;  3KY7 A;  4YQ2 A;  4H3Y A;  4YVJ A;  1UAM A;  4JAL A;  3N4K A;  3OIN A;  4MCD A;  3BBH A;  1UAL A;  4YQ0 A;  1ZJR A;  3E5Y A;  3N4J A;  4JWF A;  4YVI A;  3KTY A;  5GM8 A;  1K3R A;  4YQL A;  2V3K A;  1UAK A;  2Z0Y A;  2V3J A;  4YQR A;  1GZ0 A;  5GMB A;  4YQC A;  4YQI A;  1V6Z A;  4YQG A;  4YQA A;  2EGW A;  3O7B A;  3L8U A;  4MCB A;  3IEF A;  4E8B A;  3AXZ A;  4YQ4 A;  1P9P A;  3GYQ A;  4YVG A;  4YQ5 A;  3AIA A;  3DCM X;  1VHK A;  4YQ6 A;  4YQP A;  3BBD A;  4YQN A;  4MCC A;  1Z85 A;  1X7P A;  3ONP A;  5GMC A;  2O3A A;  4L69 A;  4XBO A;  4RG1 A;  4CNF A;  4X3L A;  1V2X A;  4YVH A;  4YPW A;  5FAI A;  1UAJ A;  4YQB A;  4YPZ A;  4YQO A;  4YQS A;  3KW2 A;  3NK6 A;  4YQ1 A;  1O6D A;  3OIJ A;  1NXZ A;  4YQQ A;  4YQ3 A;  4YQD A;  2QWV A;  4YQ8 A;  4YPX A;  3KNU A;  2CX8 A;  3ILK A;  5CO4 A;  4YVK A;  4JAK A;  4CNE A;  1OY5 A;  2YY8 A;  2HA8 A;  2I6D A;  1VH0 A;  1VHY A;  4PZK A;  2QMM A;  3OII A;  5D9F A;  4JWG A;  4KGN A;  4YPY A;  1J85 A;  1MXI A;  4CNG A;  4CND A;  4IG6 A;  4JWJ A;  1IPA A;  4FAK A;  4J3C A;  4YQT A;  3BBE A;  1NS5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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