4UOPA

Crystal structure of the lipoteichoic acid synthase ltap from listeria monocytogenes
Total Genus 150
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
150
Knots found
sequence length
408
structure length
408
Chain Sequence
ITAKNVNDIKGVSVKSNPDYFGAAKGKNLIIVQLESFQRNLTNVKINGQSITPTLDGLQNETMYSNQFFQTVSKSNTADAEWSVYTSTFPSGYYTNTQTYGDRVIPSMPRLLGKNDYKTATFHTNDASFYNRDEFYPAVGFDKFYDRKFFGDEDVIGFSPSDEVLYNKAFPILEEQYKNNQKFYAQLISVSSHMPFDIPKDKQEIDLPSDLKDTELGNYFEAVHYADKQLGEFIQKLKDSGIWDDSVVVFYGDHHIIKTDQLPEEQKKYVNRSTQLKAEPADDYRIPFFLHYPGMENPGEIKNVGGEIDIMPTVMNLLGIKTGDQIMFGTDILNSSNNYVPERYTMPEGSYFTNSYMYQPDESFETGAATNYDGTNKELSSDVKKRFDASRKLLQYSDSYVNNLPLRN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords LIPOTEICHOIC ACID PRIMASE
publication title Structural and mechanistic insight into the Listeria monocytogenes two-enzyme lipoteichoic acid synthesis system.
pubmed doi rcsb
source organism Listeria monocytogenes
total genus 150
structure length 408
sequence length 408
chains with identical sequence B
other databases KnotProt 2.0: S +31
ec nomenclature ec 2.7.8.-:
pdb deposition date 2014-06-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00884 Sulfatase Sulfatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 4uopA02
2ZKTA 1P49A 2W5SA 3WAVA 4LRDA 4UPLA 2W5QA 4MHXA 1ALHA 1ALIA 4KAVA 3TWZA 4CYSA 4ZG6A 4UPHA 3TG0A 4N7TA 4B56A 1ZEFA 2W5WA 4QAXA 1AJAA 4GTYA 5DLWA 1N2KA 1AJBA 5L0KA 4KJDA 3TX0A 2ANHA 4LR9A 1ALKA 4GTXA 3M8WA 3B5QA 3LXQA 2GA3A 5IJSA 1E2SP 4UOOA 3M8YA 3IDDA 5LRMA 2XR9A 1KHJA 4UORA 1HDHA 3KD8A 4ZG7A 4NWXA 1KHKA 4GTWA 3IGYB 1HJKA 4LR7A 5AJ9A 3UN3A 4CXKA 3NKQA 5EGEA 2G9YA 4CXUA 2IUCA 4NWJA 5HRTA 3NKPA 1ED9A 1B8JA 1ANJA 1KH5A 4UOPA 1O99A 2W5RA 3BDGB 3Q3QA 4CYRA 1ELYA 4CXSA 3BDHA 2IFYA 3CMRA 2GSOA 1E33P 5LRNA 5DLTA 2W8SA 5L0EA 1AJDA 2W5TA 2VQRA 3UN5A 1KH4A 1URBA 1AUKA 1K7HA 2W5XA 1SHNA 4LQYA 3WAYA 4TN0A 3MK2A 5INHA 1Y7AA 4LRFA 1E3CP 4KM4A 3T00A 3NVLA 4LR2A 3SZYA 3T01A 1Y6VA 4KJGA 5TJ3A 4UPKA 1EW2A 3WAWA 1E1ZP 1ELZA 3UN2A 1O98A 1EI6A 3DYCA 4UPIA 3WBHA 5LQQA 3WAXA 3ED4A 3NKRA 4LRCA 1ED8A 2GSUA 4KAYA 3MK0A 1SHQA 4FDIA 4MIVA 1ELXA 1EJJA 1EW9A 1ZEDA 1N2LA 2XRGA 3BDFA 3BDGA 5K4PA 2W8DA 1KH9A 1KH7A 2W5VA 3M8ZA 1AJCA 3OT9A 4LREA 3SZZA 2RH6A 1HQAA 1KHNA 4GTZA 5EGHA 5GOVA 2IUCB 5KXAA 4MY4A 1URAA 3M7VA 5LIAA 1KHLA 3A52A 3NKNA 3E2DA 3NKMA 3DPCA 1EQJA 4LRBA 5L0BA 1FSUA 4YR1A 4LRAA 1ALJA 1ANIA 3UO0A 1EW8A 3NKOA 2X98A 2GLQA 5DLVA 5GRRA 4ZG9A 4LR8A 2QZUA 3UNYA 4FDJA 3IGZB 3T02A 4ZGAA 2D1GA 5IJQA 1ZEBA 2GSNA 3MK1A 5C66A
chains in the Genus database with same CATH superfamily
2ZKTA 1P49A 2W5SA 3WAVA 4LRDA 4UPLA 2W5QA 4MHXA 1ALHA 1ALIA 4KAVA 3TWZA 4CYSA 4ZG6A 4UPHA 3TG0A 4N7TA 4B56A 1ZEFA 2W5WA 4QAXA 1AJAA 4GTYA 5DLWA 1N2KA 1AJBA 5L0KA 4KJDA 3TX0A 2ANHA 4LR9A 1ALKA 4GTXA 3M8WA 3B5QA 3LXQA 2GA3A 5IJSA 1E2SP 4UOOA 3M8YA 3IDDA 5LRMA 2XR9A 1KHJA 4UORA 1HDHA 3KD8A 4ZG7A 4NWXA 1KHKA 4GTWA 3IGYB 1HJKA 4LR7A 5AJ9A 3UN3A 4CXKA 3NKQA 5EGEA 2G9YA 4CXUA 2IUCA 4NWJA 5HRTA 3NKPA 1ED9A 1B8JA 1ANJA 1KH5A 4UOPA 1O99A 2W5RA 3BDGB 3Q3QA 4CYRA 1ELYA 4CXSA 3BDHA 2IFYA 3CMRA 2GSOA 1E33P 5LRNA 5DLTA 2W8SA 5L0EA 1AJDA 2W5TA 2VQRA 3UN5A 1KH4A 1URBA 1AUKA 1K7HA 2W5XA 1SHNA 4LQYA 3WAYA 4TN0A 3MK2A 5INHA 1Y7AA 4LRFA 1E3CP 4KM4A 3T00A 3NVLA 4LR2A 3SZYA 3T01A 1Y6VA 4KJGA 5TJ3A 4UPKA 1EW2A 3WAWA 1E1ZP 1ELZA 3UN2A 1O98A 1EI6A 3DYCA 4UPIA 3WBHA 5LQQA 3WAXA 3ED4A 3NKRA 4LRCA 1ED8A 2GSUA 4KAYA 3MK0A 1SHQA 4FDIA 4MIVA 1ELXA 1EJJA 1EW9A 1ZEDA 1N2LA 2XRGA 3BDFA 3BDGA 5K4PA 2W8DA 1KH9A 1KH7A 2W5VA 3M8ZA 1AJCA 3OT9A 4LREA 3SZZA 2RH6A 1HQAA 1KHNA 4GTZA 5EGHA 5GOVA 2IUCB 5KXAA 4MY4A 1URAA 3M7VA 5LIAA 1KHLA 3A52A 3NKNA 3E2DA 3NKMA 3DPCA 1EQJA 4LRBA 5L0BA 1FSUA 4YR1A 4LRAA 1ALJA 1ANIA 3UO0A 1EW8A 3NKOA 2X98A 2GLQA 5DLVA 5GRRA 4ZG9A 4LR8A 2QZUA 3UNYA 4FDJA 3IGZB 3T02A 4ZGAA 2D1GA 5IJQA 1ZEBA 2GSNA 3MK1A 5C66A
chains in the Genus database with same CATH topology
2ZKTA 1P49A 2W5SA 3WAVA 4LRDA 4UPLA 2W5QA 4MHXA 1ALHA 1ALIA 4KAVA 3TWZA 4CYSA 4ZG6A 4UPHA 3TG0A 4N7TA 4B56A 1ZEFA 2W5WA 4QAXA 1AJAA 4GTYA 5DLWA 1N2KA 1AJBA 5L0KA 4KJDA 3TX0A 2ANHA 4LR9A 1ALKA 4GTXA 3M8WA 3B5QA 3LXQA 2GA3A 5IJSA 1E2SP 4UOOA 3M8YA 3IDDA 5LRMA 2XR9A 1KHJA 4UORA 1HDHA 3KD8A 4ZG7A 4NWXA 1KHKA 4GTWA 3IGYB 1HJKA 4LR7A 5AJ9A 3UN3A 4CXKA 3NKQA 5EGEA 2G9YA 4CXUA 2IUCA 4NWJA 5HRTA 3NKPA 1ED9A 1B8JA 1ANJA 1KH5A 4UOPA 1O99A 2W5RA 3BDGB 3Q3QA 4CYRA 1ELYA 4CXSA 3BDHA 2IFYA 3CMRA 2GSOA 1E33P 5LRNA 5DLTA 2W8SA 5L0EA 1AJDA 2W5TA 2VQRA 3UN5A 1KH4A 1URBA 1AUKA 1K7HA 2W5XA 1SHNA 4LQYA 3WAYA 4TN0A 3MK2A 5INHA 1Y7AA 4LRFA 1E3CP 4KM4A 3T00A 3NVLA 4LR2A 3SZYA 3T01A 1Y6VA 4KJGA 5TJ3A 4UPKA 1EW2A 3WAWA 1E1ZP 1ELZA 3UN2A 1O98A 1EI6A 3DYCA 4UPIA 3WBHA 5LQQA 3WAXA 3ED4A 3NKRA 4LRCA 1ED8A 2GSUA 4KAYA 3MK0A 1SHQA 4FDIA 4MIVA 1ELXA 1EJJA 1EW9A 1ZEDA 1N2LA 2XRGA 3BDFA 3BDGA 5K4PA 2W8DA 1KH9A 1KH7A 2W5VA 3M8ZA 1AJCA 3OT9A 4LREA 3SZZA 2RH6A 1HQAA 1KHNA 4GTZA 5EGHA 5GOVA 2IUCB 5KXAA 4MY4A 1URAA 3M7VA 5LIAA 1KHLA 3A52A 3NKNA 3E2DA 3NKMA 3DPCA 1EQJA 4LRBA 5L0BA 1FSUA 4YR1A 4LRAA 1ALJA 1ANIA 3UO0A 1EW8A 3NKOA 2X98A 2GLQA 5DLVA 5GRRA 4ZG9A 4LR8A 2QZUA 3UNYA 4FDJA 3IGZB 3T02A 4ZGAA 2D1GA 5IJQA 1ZEBA 2GSNA 3MK1A 5C66A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ZKT A;  1P49 A;  2W5S A;  3WAV A;  4LRD A;  4UPL A;  2W5Q A;  4MHX A;  1ALH A;  1ALI A;  4KAV A;  3TWZ A;  4CYS A;  4ZG6 A;  4UPH A;  3TG0 A;  4N7T A;  4B56 A;  1ZEF A;  2W5W A;  4QAX A;  1AJA A;  4GTY A;  5DLW A;  1N2K A;  1AJB A;  5L0K A;  4KJD A;  3TX0 A;  2ANH A;  4LR9 A;  1ALK A;  4GTX A;  3M8W A;  3B5Q A;  3LXQ A;  2GA3 A;  5IJS A;  1E2S P;  4UOO A;  3M8Y A;  3IDD A;  5LRM A;  2XR9 A;  1KHJ A;  4UOR A;  1HDH A;  3KD8 A;  4ZG7 A;  4NWX A;  1KHK A;  4GTW A;  3IGY B;  1HJK A;  4LR7 A;  5AJ9 A;  3UN3 A;  4CXK A;  3NKQ A;  5EGE A;  2G9Y A;  4CXU A;  2IUC A;  4NWJ A;  5HRT A;  3NKP A;  1ED9 A;  1B8J A;  1ANJ A;  1KH5 A;  4UOP A;  1O99 A;  2W5R A;  3BDG B;  3Q3Q A;  4CYR A;  1ELY A;  4CXS A;  3BDH A;  2IFY A;  3CMR A;  2GSO A;  1E33 P;  5LRN A;  5DLT A;  2W8S A;  5L0E A;  1AJD A;  2W5T A;  2VQR A;  3UN5 A;  1KH4 A;  1URB A;  1AUK A;  1K7H A;  2W5X A;  1SHN A;  4LQY A;  3WAY A;  4TN0 A;  3MK2 A;  5INH A;  1Y7A A;  4LRF A;  1E3C P;  4KM4 A;  3T00 A;  3NVL A;  4LR2 A;  3SZY A;  3T01 A;  1Y6V A;  4KJG A;  5TJ3 A;  4UPK A;  1EW2 A;  3WAW A;  1E1Z P;  1ELZ A;  3UN2 A;  1O98 A;  1EI6 A;  3DYC A;  4UPI A;  3WBH A;  5LQQ A;  3WAX A;  3ED4 A;  3NKR A;  4LRC A;  1ED8 A;  2GSU A;  4KAY A;  3MK0 A;  1SHQ A;  4FDI A;  4MIV A;  1ELX A;  1EJJ A;  1EW9 A;  1ZED A;  1N2L A;  2XRG A;  3BDF A;  3BDG A;  5K4P A;  2W8D A;  1KH9 A;  1KH7 A;  2W5V A;  3M8Z A;  1AJC A;  3OT9 A;  4LRE A;  3SZZ A;  2RH6 A;  1HQA A;  1KHN A;  4GTZ A;  5EGH A;  5GOV A;  2IUC B;  5KXA A;  4MY4 A;  1URA A;  3M7V A;  5LIA A;  1KHL A;  3A52 A;  3NKN A;  3E2D A;  3NKM A;  3DPC A;  1EQJ A;  4LRB A;  5L0B A;  1FSU A;  4YR1 A;  4LRA A;  1ALJ A;  1ANI A;  3UO0 A;  1EW8 A;  3NKO A;  2X98 A;  2GLQ A;  5DLV A;  5GRR A;  4ZG9 A;  4LR8 A;  2QZU A;  3UNY A;  4FDJ A;  3IGZ B;  3T02 A;  4ZGA A;  2D1G A;  5IJQ A;  1ZEB A;  2GSN A;  3MK1 A;  5C66 A; 
#chains in the Genus database with same CATH topology
 2ZKT A;  1P49 A;  2W5S A;  3WAV A;  4LRD A;  4UPL A;  2W5Q A;  4MHX A;  1ALH A;  1ALI A;  4KAV A;  3TWZ A;  4CYS A;  4ZG6 A;  4UPH A;  3TG0 A;  4N7T A;  4B56 A;  1ZEF A;  2W5W A;  4QAX A;  1AJA A;  4GTY A;  5DLW A;  1N2K A;  1AJB A;  5L0K A;  4KJD A;  3TX0 A;  2ANH A;  4LR9 A;  1ALK A;  4GTX A;  3M8W A;  3B5Q A;  3LXQ A;  2GA3 A;  5IJS A;  1E2S P;  4UOO A;  3M8Y A;  3IDD A;  5LRM A;  2XR9 A;  1KHJ A;  4UOR A;  1HDH A;  3KD8 A;  4ZG7 A;  4NWX A;  1KHK A;  4GTW A;  3IGY B;  1HJK A;  4LR7 A;  5AJ9 A;  3UN3 A;  4CXK A;  3NKQ A;  5EGE A;  2G9Y A;  4CXU A;  2IUC A;  4NWJ A;  5HRT A;  3NKP A;  1ED9 A;  1B8J A;  1ANJ A;  1KH5 A;  4UOP A;  1O99 A;  2W5R A;  3BDG B;  3Q3Q A;  4CYR A;  1ELY A;  4CXS A;  3BDH A;  2IFY A;  3CMR A;  2GSO A;  1E33 P;  5LRN A;  5DLT A;  2W8S A;  5L0E A;  1AJD A;  2W5T A;  2VQR A;  3UN5 A;  1KH4 A;  1URB A;  1AUK A;  1K7H A;  2W5X A;  1SHN A;  4LQY A;  3WAY A;  4TN0 A;  3MK2 A;  5INH A;  1Y7A A;  4LRF A;  1E3C P;  4KM4 A;  3T00 A;  3NVL A;  4LR2 A;  3SZY A;  3T01 A;  1Y6V A;  4KJG A;  5TJ3 A;  4UPK A;  1EW2 A;  3WAW A;  1E1Z P;  1ELZ A;  3UN2 A;  1O98 A;  1EI6 A;  3DYC A;  4UPI A;  3WBH A;  5LQQ A;  3WAX A;  3ED4 A;  3NKR A;  4LRC A;  1ED8 A;  2GSU A;  4KAY A;  3MK0 A;  1SHQ A;  4FDI A;  4MIV A;  1ELX A;  1EJJ A;  1EW9 A;  1ZED A;  1N2L A;  2XRG A;  3BDF A;  3BDG A;  5K4P A;  2W8D A;  1KH9 A;  1KH7 A;  2W5V A;  3M8Z A;  1AJC A;  3OT9 A;  4LRE A;  3SZZ A;  2RH6 A;  1HQA A;  1KHN A;  4GTZ A;  5EGH A;  5GOV A;  2IUC B;  5KXA A;  4MY4 A;  1URA A;  3M7V A;  5LIA A;  1KHL A;  3A52 A;  3NKN A;  3E2D A;  3NKM A;  3DPC A;  1EQJ A;  4LRB A;  5L0B A;  1FSU A;  4YR1 A;  4LRA A;  1ALJ A;  1ANI A;  3UO0 A;  1EW8 A;  3NKO A;  2X98 A;  2GLQ A;  5DLV A;  5GRR A;  4ZG9 A;  4LR8 A;  2QZU A;  3UNY A;  4FDJ A;  3IGZ B;  3T02 A;  4ZGA A;  2D1G A;  5IJQ A;  1ZEB A;  2GSN A;  3MK1 A;  5C66 A; 
#chains in the Genus database with same CATH homology
 2ZKT A;  1P49 A;  2W5S A;  3WAV A;  4LRD A;  4UPL A;  2W5Q A;  4MHX A;  1ALH A;  1ALI A;  4KAV A;  3TWZ A;  4CYS A;  4ZG6 A;  4UPH A;  3TG0 A;  4N7T A;  4B56 A;  1ZEF A;  2W5W A;  4QAX A;  1AJA A;  4GTY A;  5DLW A;  1N2K A;  1AJB A;  5L0K A;  4KJD A;  3TX0 A;  2ANH A;  4LR9 A;  1ALK A;  4GTX A;  3M8W A;  3B5Q A;  3LXQ A;  2GA3 A;  5IJS A;  1E2S P;  4UOO A;  3M8Y A;  3IDD A;  5LRM A;  2XR9 A;  1KHJ A;  4UOR A;  1HDH A;  3KD8 A;  4ZG7 A;  4NWX A;  1KHK A;  4GTW A;  3IGY B;  1HJK A;  4LR7 A;  5AJ9 A;  3UN3 A;  4CXK A;  3NKQ A;  5EGE A;  2G9Y A;  4CXU A;  2IUC A;  4NWJ A;  5HRT A;  3NKP A;  1ED9 A;  1B8J A;  1ANJ A;  1KH5 A;  4UOP A;  1O99 A;  2W5R A;  3BDG B;  3Q3Q A;  4CYR A;  1ELY A;  4CXS A;  3BDH A;  2IFY A;  3CMR A;  2GSO A;  1E33 P;  5LRN A;  5DLT A;  2W8S A;  5L0E A;  1AJD A;  2W5T A;  2VQR A;  3UN5 A;  1KH4 A;  1URB A;  1AUK A;  1K7H A;  2W5X A;  1SHN A;  4LQY A;  3WAY A;  4TN0 A;  3MK2 A;  5INH A;  1Y7A A;  4LRF A;  1E3C P;  4KM4 A;  3T00 A;  3NVL A;  4LR2 A;  3SZY A;  3T01 A;  1Y6V A;  4KJG A;  5TJ3 A;  4UPK A;  1EW2 A;  3WAW A;  1E1Z P;  1ELZ A;  3UN2 A;  1O98 A;  1EI6 A;  3DYC A;  4UPI A;  3WBH A;  5LQQ A;  3WAX A;  3ED4 A;  3NKR A;  4LRC A;  1ED8 A;  2GSU A;  4KAY A;  3MK0 A;  1SHQ A;  4FDI A;  4MIV A;  1ELX A;  1EJJ A;  1EW9 A;  1ZED A;  1N2L A;  2XRG A;  3BDF A;  3BDG A;  5K4P A;  2W8D A;  1KH9 A;  1KH7 A;  2W5V A;  3M8Z A;  1AJC A;  3OT9 A;  4LRE A;  3SZZ A;  2RH6 A;  1HQA A;  1KHN A;  4GTZ A;  5EGH A;  5GOV A;  2IUC B;  5KXA A;  4MY4 A;  1URA A;  3M7V A;  5LIA A;  1KHL A;  3A52 A;  3NKN A;  3E2D A;  3NKM A;  3DPC A;  1EQJ A;  4LRB A;  5L0B A;  1FSU A;  4YR1 A;  4LRA A;  1ALJ A;  1ANI A;  3UO0 A;  1EW8 A;  3NKO A;  2X98 A;  2GLQ A;  5DLV A;  5GRR A;  4ZG9 A;  4LR8 A;  2QZU A;  3UNY A;  4FDJ A;  3IGZ B;  3T02 A;  4ZGA A;  2D1G A;  5IJQ A;  1ZEB A;  2GSN A;  3MK1 A;  5C66 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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