5AGIA

Crystal structure of the leurs editing domain of candida albicans mutant k510a in complex with the adduct formed by an2690-amp
Total Genus 84
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
84
sequence length
252
structure length
252
Chain Sequence
GYVGIKIRLTDVAPQAQELFKKESLDVKENKVYLVAATLRPETMYGQTCCFVSPKIDYGVFDAGNGDYFITTERAFKNMSFQNLTPKRGYYKPLFTINGKTLIGSRIDAPYAVNKNLRVLPMETVLATKGTGVVTCVPSDSPDDFVTTRDLANKPEYYGIEKDWVQTDIVPIVHTEKYGDKCAEFLVNDLKIQSPKDSVQLANAKELAYKEGFYNGTMLIGKYKGDKVEDAAPKVKQDLIDEGLAFVYNEPE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Ligase
molecule keywords POTENTIAL CYTOSOLIC LEUCYL TRNA SYNTHETASE
publication title Analysis of the Resistance Mechanism of a Benzoxaborole Inhibitor Reveals Insight Into the Leucyl-tRNA Synthetase Editing Mechanism.
pubmed doi rcsb
source organism Candida albicans
total genus 84
structure length 252
sequence length 252
ec nomenclature ec 6.1.1.4: Leucine--tRNA ligase.
pdb deposition date 2015-02-02
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.740.10 Alpha Beta Alpha-Beta Complex Isoleucyl-tRNA Synthetase; domain 2 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain 5agiA00
3ZJVA 5AGIA 1JZSA 4ARCA 1QU2A 1WKBA 4CQNA 1OBHA 3ZJUA 2WFEA 1WK9A 1H3NA 4K48A 1WK8A 4AS1A 5AGTA 3PZ6A 1QU3A 1WZ2A 1ILEA 1WKAA 5AGHA 2V0CA 2WFGA 5AGJA 4K47A 4AQ7A 3O0AA 4ARIA 1FFYA 3PZ5A 2AJGA 5AGSA 1WNZA 2AJIA 1OBCA 3ZJTA 2BYTA 1WNYA 2BTEA 1GAXA 1UDZA 1UE0A 2AJHA 5AGRA 1IVSA 3PZ0A 2V0GA 3ZGZA 2WFDA 1JZQA
chains in the Genus database with same CATH superfamily
3ZJVA 5AGIA 1JZSA 4ARCA 1QU2A 1WKBA 4CQNA 1OBHA 3ZJUA 2WFEA 1WK9A 1H3NA 4K48A 1WK8A 4AS1A 5AGTA 3PZ6A 1QU3A 1WZ2A 1ILEA 1WKAA 5AGHA 2V0CA 2WFGA 5AGJA 4K47A 4AQ7A 3O0AA 4ARIA 1FFYA 3PZ5A 2AJGA 5AGSA 1WNZA 2AJIA 1OBCA 3ZJTA 2BYTA 1WNYA 2BTEA 1GAXA 1UDZA 1UE0A 2AJHA 5AGRA 1IVSA 3PZ0A 2V0GA 3ZGZA 2WFDA 1JZQA
chains in the Genus database with same CATH topology
3ZJVA 5AGIA 1JZSA 4ARCA 1QU2A 1WKBA 4CQNA 1OBHA 3ZJUA 2WFEA 1WK9A 1H3NA 4K48A 1WK8A 4AS1A 5AGTA 3PZ6A 1QU3A 1WZ2A 1ILEA 1WKAA 5AGHA 2V0CA 2WFGA 5AGJA 4K47A 4AQ7A 3O0AA 4ARIA 1FFYA 3PZ5A 2AJGA 5AGSA 1WNZA 2AJIA 1OBCA 3ZJTA 2BYTA 1WNYA 2BTEA 1GAXA 1UDZA 1UE0A 2AJHA 5AGRA 1IVSA 3PZ0A 2V0GA 3ZGZA 2WFDA 1JZQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3ZJV A;  5AGI A;  1JZS A;  4ARC A;  1QU2 A;  1WKB A;  4CQN A;  1OBH A;  3ZJU A;  2WFE A;  1WK9 A;  1H3N A;  4K48 A;  1WK8 A;  4AS1 A;  5AGT A;  3PZ6 A;  1QU3 A;  1WZ2 A;  1ILE A;  1WKA A;  5AGH A;  2V0C A;  2WFG A;  5AGJ A;  4K47 A;  4AQ7 A;  3O0A A;  4ARI A;  1FFY A;  3PZ5 A;  2AJG A;  5AGS A;  1WNZ A;  2AJI A;  1OBC A;  3ZJT A;  2BYT A;  1WNY A;  2BTE A;  1GAX A;  1UDZ A;  1UE0 A;  2AJH A;  5AGR A;  1IVS A;  3PZ0 A;  2V0G A;  3ZGZ A;  2WFD A;  1JZQ A; 
#chains in the Genus database with same CATH topology
 3ZJV A;  5AGI A;  1JZS A;  4ARC A;  1QU2 A;  1WKB A;  4CQN A;  1OBH A;  3ZJU A;  2WFE A;  1WK9 A;  1H3N A;  4K48 A;  1WK8 A;  4AS1 A;  5AGT A;  3PZ6 A;  1QU3 A;  1WZ2 A;  1ILE A;  1WKA A;  5AGH A;  2V0C A;  2WFG A;  5AGJ A;  4K47 A;  4AQ7 A;  3O0A A;  4ARI A;  1FFY A;  3PZ5 A;  2AJG A;  5AGS A;  1WNZ A;  2AJI A;  1OBC A;  3ZJT A;  2BYT A;  1WNY A;  2BTE A;  1GAX A;  1UDZ A;  1UE0 A;  2AJH A;  5AGR A;  1IVS A;  3PZ0 A;  2V0G A;  3ZGZ A;  2WFD A;  1JZQ A; 
#chains in the Genus database with same CATH homology
 3ZJV A;  5AGI A;  1JZS A;  4ARC A;  1QU2 A;  1WKB A;  4CQN A;  1OBH A;  3ZJU A;  2WFE A;  1WK9 A;  1H3N A;  4K48 A;  1WK8 A;  4AS1 A;  5AGT A;  3PZ6 A;  1QU3 A;  1WZ2 A;  1ILE A;  1WKA A;  5AGH A;  2V0C A;  2WFG A;  5AGJ A;  4K47 A;  4AQ7 A;  3O0A A;  4ARI A;  1FFY A;  3PZ5 A;  2AJG A;  5AGS A;  1WNZ A;  2AJI A;  1OBC A;  3ZJT A;  2BYT A;  1WNY A;  2BTE A;  1GAX A;  1UDZ A;  1UE0 A;  2AJH A;  5AGR A;  1IVS A;  3PZ0 A;  2V0G A;  3ZGZ A;  2WFD A;  1JZQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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