5AGRA

Crystal structure of the leurs editing domain of mycobacterium tuberculosis in complex with the adduct (s)-3-(aminomethyl)-7-ethoxybenzo[c][1,2]oxaborol-1(3h)-ol-amp
Total Genus 53
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
53
sequence length
201
structure length
190
Chain Sequence
GAVALFSARAVDIEVFTTRPDTLFGATYLVLAPEHDLVDELVAASWPAGVNPLWTYGGGTPGEAIAAYRRAIAAKSDLERQKTGVFLGSYAINPANGEPVPIFIADYVLAGYGTGAIMAVPGHDQRDWDFARAFGLPIVEVIAGGNISESAYTGDGILVNSDYLNGMSVPAAKRAIVDRLESAGRGRARI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Ligase
molecule keywords LEUCINE--TRNA LIGASE
publication title Discovery of Novel Oral Protein Synthesis Inhibitors of Mycobacterium Tuberculosis that Target Leucyl-tRNA Synthetase.
pubmed doi rcsb
source organism Mycobacterium tuberculosis
total genus 53
structure length 190
sequence length 201
ec nomenclature ec 6.1.1.4: Leucine--tRNA ligase.
pdb deposition date 2015-02-03
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.740.10 Alpha Beta Alpha-Beta Complex Isoleucyl-tRNA Synthetase; domain 2 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain 5agrA00
3PZ6A 1WZ2A 2BTEA 2AJIA 2V0GA 4AS1A 1GAXA 3ZGZA 1UE0A 2WFGA 1WNZA 1WKAA 1FFYA 1ILEA 1OBCA 3PZ5A 3PZ0A 4ARIA 5AGSA 5AGIA 2BYTA 1JZSA 1WKBA 1IVSA 1QU2A 2V0CA 5AGHA 4K47A 1JZQA 3ZJVA 4AQ7A 1WK8A 1UDZA 3O0AA 4ARCA 2AJGA 5AGTA 5AGJA 3ZJUA 1H3NA 5AGRA 1OBHA 2WFDA 4CQNA 3ZJTA 2WFEA 1QU3A 1WNYA 4K48A 1WK9A 2AJHA
chains in the Genus database with same CATH superfamily
3PZ6A 1WZ2A 2BTEA 2AJIA 2V0GA 4AS1A 1GAXA 3ZGZA 1UE0A 2WFGA 1WNZA 1WKAA 1FFYA 1ILEA 1OBCA 3PZ5A 3PZ0A 4ARIA 5AGSA 5AGIA 2BYTA 1JZSA 1WKBA 1IVSA 1QU2A 2V0CA 5AGHA 4K47A 1JZQA 3ZJVA 4AQ7A 1WK8A 1UDZA 3O0AA 4ARCA 2AJGA 5AGTA 5AGJA 3ZJUA 1H3NA 5AGRA 1OBHA 2WFDA 4CQNA 3ZJTA 2WFEA 1QU3A 1WNYA 4K48A 1WK9A 2AJHA
chains in the Genus database with same CATH topology
3PZ6A 1WZ2A 2BTEA 2AJIA 2V0GA 4AS1A 1GAXA 3ZGZA 1UE0A 2WFGA 1WNZA 1WKAA 1FFYA 1ILEA 1OBCA 3PZ5A 3PZ0A 4ARIA 5AGSA 5AGIA 2BYTA 1JZSA 1WKBA 1IVSA 1QU2A 2V0CA 5AGHA 4K47A 1JZQA 3ZJVA 4AQ7A 1WK8A 1UDZA 3O0AA 4ARCA 2AJGA 5AGTA 5AGJA 3ZJUA 1H3NA 5AGRA 1OBHA 2WFDA 4CQNA 3ZJTA 2WFEA 1QU3A 1WNYA 4K48A 1WK9A 2AJHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3PZ6 A;  1WZ2 A;  2BTE A;  2AJI A;  2V0G A;  4AS1 A;  1GAX A;  3ZGZ A;  1UE0 A;  2WFG A;  1WNZ A;  1WKA A;  1FFY A;  1ILE A;  1OBC A;  3PZ5 A;  3PZ0 A;  4ARI A;  5AGS A;  5AGI A;  2BYT A;  1JZS A;  1WKB A;  1IVS A;  1QU2 A;  2V0C A;  5AGH A;  4K47 A;  1JZQ A;  3ZJV A;  4AQ7 A;  1WK8 A;  1UDZ A;  3O0A A;  4ARC A;  2AJG A;  5AGT A;  5AGJ A;  3ZJU A;  1H3N A;  5AGR A;  1OBH A;  2WFD A;  4CQN A;  3ZJT A;  2WFE A;  1QU3 A;  1WNY A;  4K48 A;  1WK9 A;  2AJH A; 
#chains in the Genus database with same CATH topology
 3PZ6 A;  1WZ2 A;  2BTE A;  2AJI A;  2V0G A;  4AS1 A;  1GAX A;  3ZGZ A;  1UE0 A;  2WFG A;  1WNZ A;  1WKA A;  1FFY A;  1ILE A;  1OBC A;  3PZ5 A;  3PZ0 A;  4ARI A;  5AGS A;  5AGI A;  2BYT A;  1JZS A;  1WKB A;  1IVS A;  1QU2 A;  2V0C A;  5AGH A;  4K47 A;  1JZQ A;  3ZJV A;  4AQ7 A;  1WK8 A;  1UDZ A;  3O0A A;  4ARC A;  2AJG A;  5AGT A;  5AGJ A;  3ZJU A;  1H3N A;  5AGR A;  1OBH A;  2WFD A;  4CQN A;  3ZJT A;  2WFE A;  1QU3 A;  1WNY A;  4K48 A;  1WK9 A;  2AJH A; 
#chains in the Genus database with same CATH homology
 3PZ6 A;  1WZ2 A;  2BTE A;  2AJI A;  2V0G A;  4AS1 A;  1GAX A;  3ZGZ A;  1UE0 A;  2WFG A;  1WNZ A;  1WKA A;  1FFY A;  1ILE A;  1OBC A;  3PZ5 A;  3PZ0 A;  4ARI A;  5AGS A;  5AGI A;  2BYT A;  1JZS A;  1WKB A;  1IVS A;  1QU2 A;  2V0C A;  5AGH A;  4K47 A;  1JZQ A;  3ZJV A;  4AQ7 A;  1WK8 A;  1UDZ A;  3O0A A;  4ARC A;  2AJG A;  5AGT A;  5AGJ A;  3ZJU A;  1H3N A;  5AGR A;  1OBH A;  2WFD A;  4CQN A;  3ZJT A;  2WFE A;  1QU3 A;  1WNY A;  4K48 A;  1WK9 A;  2AJH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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