5AOXB

Human alu rna retrotransposition complex in the ribosome-stalling conformation
Total Genus 24
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
94
structure length
86
Chain Sequence
GAMESEQFLTELTRLFQKCRTSGSVYITLKKYDGRTKPIFEPADNKCLLRATDGKKKISTVVSSKEVNKFQMAYSNLLRANMDGLK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Translation
molecule keywords SIGNAL RECOGNITION PARTICLE 9 KDA PROTEIN
publication title Retrotransposition and Crystal Structure of an Alu Rnp in the Ribosome-Stalling Conformation.
pubmed doi rcsb
source organism Homo sapiens
total genus 24
structure length 86
sequence length 94
chains with identical sequence E
ec nomenclature
pdb deposition date 2015-09-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF02290 SRP14 Signal recognition particle 14kD protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.720.10 Alpha Beta 2-Layer Sandwich Signal recognition particle alu RNA binding heterodimer, srp9/1 Signal recognition particle alu RNA binding heterodimer, srp9/1 5aoxB00
1E8OA 4UYJA 2W9JA 5AOXB 5AOXA 1914A 1E8OB 4UYKB 4UYKA 4UYJB
chains in the Genus database with same CATH superfamily
2DK6A 4UYJA 3SK1A 3OMSA 1UJRA 2A90A 2FJAB 1U7IA 2X5GA 4GYYA 4GYWA 4AKXB 1JNZB 4GZ6A 4UYKB 2FJBB 4UYKA 2RSFA 1X4RA 2KJZA 5BNWA 3TU3B 4N3BA 4AY6A 3TAXA 2W9JA 5AOXB 5AOXA 1914A 3BT3A 1E8OB 4UYJB 3GYXB 1E8OA 1QMOE 2K4NA 2X5TA 2X5HA 4N39A 3V3LA 3PE4A 2FJEB 4CDRA 4XI9A 4XIFA 3PE3A 3VCXA 4N3AA 3ITWA 2FJDB 5C1DA 4AY5A 4N3CA 4GZ5A 2FFGA 4GZ3A 1JNRB
chains in the Genus database with same CATH topology
2DK6A 4UYJA 3SK1A 3OMSA 1UJRA 2A90A 2FJAB 1U7IA 2X5GA 4GYYA 4GYWA 4AKXB 1JNZB 4GZ6A 4UYKB 2FJBB 4UYKA 2RSFA 1X4RA 2KJZA 5BNWA 3TU3B 4N3BA 4AY6A 3TAXA 2W9JA 5AOXB 5AOXA 1914A 3BT3A 1E8OB 4UYJB 3GYXB 1E8OA 1QMOE 2K4NA 2X5TA 2X5HA 4N39A 3V3LA 3PE4A 2FJEB 4CDRA 4XI9A 4XIFA 3PE3A 3VCXA 4N3AA 3ITWA 2FJDB 5C1DA 4AY5A 4N3CA 4GZ5A 2FFGA 4GZ3A 1JNRB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1E8O A;  4UYJ A;  2W9J A;  5AOX B;  5AOX A;  1914 A;  1E8O B;  4UYK B;  4UYK A;  4UYJ B; 
#chains in the Genus database with same CATH topology
 2DK6 A;  4UYJ A;  3SK1 A;  3OMS A;  1UJR A;  2A90 A;  2FJA B;  1U7I A;  2X5G A;  4GYY A;  4GYW A;  4AKX B;  1JNZ B;  4GZ6 A;  4UYK B;  2FJB B;  4UYK A;  2RSF A;  1X4R A;  2KJZ A;  5BNW A;  3TU3 B;  4N3B A;  4AY6 A;  3TAX A;  2W9J A;  5AOX B;  5AOX A;  1914 A;  3BT3 A;  1E8O B;  4UYJ B;  3GYX B;  1E8O A;  1QMO E;  2K4N A;  2X5T A;  2X5H A;  4N39 A;  3V3L A;  3PE4 A;  2FJE B;  4CDR A;  4XI9 A;  4XIF A;  3PE3 A;  3VCX A;  4N3A A;  3ITW A;  2FJD B;  5C1D A;  4AY5 A;  4N3C A;  4GZ5 A;  2FFG A;  4GZ3 A;  1JNR B; 
#chains in the Genus database with same CATH homology
 2DK6 A;  4UYJ A;  3SK1 A;  3OMS A;  1UJR A;  2A90 A;  2FJA B;  1U7I A;  2X5G A;  4GYY A;  4GYW A;  4AKX B;  1JNZ B;  4GZ6 A;  4UYK B;  2FJB B;  4UYK A;  2RSF A;  1X4R A;  2KJZ A;  5BNW A;  3TU3 B;  4N3B A;  4AY6 A;  3TAX A;  2W9J A;  5AOX B;  5AOX A;  1914 A;  3BT3 A;  1E8O B;  4UYJ B;  3GYX B;  1E8O A;  1QMO E;  2K4N A;  2X5T A;  2X5H A;  4N39 A;  3V3L A;  3PE4 A;  2FJE B;  4CDR A;  4XI9 A;  4XIF A;  3PE3 A;  3VCX A;  4N3A A;  3ITW A;  2FJD B;  5C1D A;  4AY5 A;  4N3C A;  4GZ5 A;  2FFG A;  4GZ3 A;  1JNR B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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