5BNCA

Structure of heme binding protein msmeg_6519 from mycobacterium smegmatis
Total Genus 72
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
72
sequence length
252
structure length
252
Chain Sequence
VPPPLTPVADVVRPSAAEEARTIAASTNVGTLATLTTEGDPWASFVTYGLLGGAPVLCVSDMAEHGRNLAHDPRASIAIVAPSAESDPLASARVTLAGVAERPEGDELAAARAAHLDAVAAAKYYIDYSDFSVWVLRVQRVRWVGGYGRMDSTTGEAYAAAEADPVTPRAAGAIAHLNADHADSLLAMARNLGGYPDTGEAVCTGADRYGLDLRVTTERGVAYTRVGYAAPISSFDQLRAATVELAQRAKQS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Heme binding protein
molecule keywords heme binding protein MSMEG_6519
publication title Sequence-Structure-Function Classification of a Catalytically Diverse Oxidoreductase Superfamily in Mycobacteria.
pubmed doi rcsb
source organism Mycobacterium smegmatis (strain atcc 700084 / mc(2)155)
total genus 72
structure length 252
sequence length 252
chains with identical sequence B
ec nomenclature
pdb deposition date 2015-05-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF10615 DUF2470 Protein of unknown function (DUF2470)
A PF13883 Pyrid_oxidase_2 Pyridoxamine 5'-phosphate oxidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 5bncA01
3.20.180.10 Alpha Beta Alpha-Beta Barrel Split barrel-like PNP-oxidase-like 5bncA02
2ECRA 1RZ1A 2HTIA 3A20A 5BNCA 2I02A 1USFA 4IRAA 3SWJA 4HMSA 4XJ2A 2HQ7A 2X1JA 2HTDA 2IG6A 3BA3A 5ESCA 3CB0A 2FURA 3FGEA 4HMVA 1G78A 2HQ9A 3U35A 3B5MA 2D36A 5CHEC 3A6QA 3VY5A 3R5WA 2HHZA 3GASA 2NR4A 2ARZA 3CP3A 3RH7A 2QCKA 4F07A 1DNLA 1WGBA 3TGVA 1FLMA 2D37A 3HY8A 4HMWA 4L82A 3AWHA 2RDEA 3VY2A 2QEAA 3A6RA 3U5WA 3H96A 1JNWA 2ECUA 4HMXA 2FG9A 3ZOHA 2I51A 1RZ0A 1WV4A 2A2JA 3KYGA 3K86A 2X1KA 2FHQA 1W3RA 3U0IA 3R5YA 4R82A 1G76A 3R5ZA 3ZOEA 1YLNA 1W3QA 3DMBA 3R5RA 3PFTA 4YBNA 1USCA 1AXJA 4HX6A 4N7RC 1Y30A 3DB0A 2PTFA 2D5MA 3R5PA 2ED4A 2IABA 4Y9IA 3NFWA 3ZOGA 3EC6A 3FKHA 3K88A 1I0RA 2VPAA 2Q9KA 1G77A 3HMZA 2AQ6A 2IMLA 1YOAA 4ZKYA 3IN6A 2D38A 2R0XA 5JABA 4YWNA 2GJGA 1W3PA 1EJEA 1NRGA 3E4VA 3U34A 2ASFA 3F7EA 4HMUA 2OL5A 2E83A 1T9MA 4XHYA 2RE7A 3R5LA 1XXOA 1CI0A 3AMFA 1WLIA 3BPKA 1VL7A 2OU5A 4Z85A 1W3OA 3ZOCA 1WLKA 3KYFA 3VYAA 1I0SA 4HMTA 5CHOA 1G79A 3BNKA 1TY9A 4QVBA 1RFEA 2R6VA 1W9AA 3K87A 3DNHA 3ZODA 1XHNA 3ZOFA
chains in the Genus database with same CATH superfamily
2ECRA 3EAAA 1RZ1A 2HTIA 3A20A 5BNCA 3VKGA 2I02A 4AKIA 1USFA 4IRAA 3SWJA 4HMSA 4XJ2A 2HQ7A 2X1JA 2HTDA 2IG6A 3BA3A 5ESCA 3CB0A 2FURA 3FGEA 4HMVA 1G78A 2HQ9A 3U35A 4AKHA 3B5MA 2D36A 5CHEC 3A6QA 3VY5A 2P5ZX 3R5WA 2HHZA 3GASA 2NR4A 2ARZA 3CP3A 3RH7A 2QCKA 4F07A 1DNLA 1WGBA 3TGVA 4W64A 1FLMA 2D37A 3HY8A 4HMWA 4L82A 3AWHA 2RDEA 3VY2A 2QEAA 3A6RA 3U5WA 3H96A 1JNWA 2ECUA 4HMXA 2FG9A 3ZOHA 2I51A 1RZ0A 1WV4A 2A2JA 3KYGA 3K86A 2FHQA 2X1KA 1W3RA 3U0IA 3R5YA 4TV4A 4R82A 1G76A 3R5ZA 3ZOEA 1YLNA 1W3QA 3DMBA 3R5RA 3PFTA 4YBNA 1USCA 1AXJA 4HX6A 4N7RC 1Y30A 4AKGA 3DB0A 2PTFA 2D5MA 3R5PA 2ED4A 4MTKA 2IABA 4Y9IA 3NFWA 2L1TA 1Y12A 3ZOGA 3EC6A 3FKHA 3K88A 1I0RA 2VPAA 2Q9KA 1G77A 3HMZA 2AQ6A 2IMLA 1YOAA 4ZKYA 3IN6A 2D38A 2R0XA 5JABA 4YWNA 2GJGA 1W3PA 1EJEA 1NRGA 3HE1A 3E4VA 3U34A 2ASFA 3F7EA 4HMUA 2OL5A 2E83A 1T9MA 4UHVA 4XHYA 2RE7A 3VKHA 4HKHA 3R5LA 1XXOA 1CI0A 3AMFA 1WLIA 3BPKA 1VL7A 2OU5A 4Z85A 1W3OA 3ZOCA 1WLKA 3KYFA 3VYAA 1I0SA 4HMTA 5CHOA 4AI6A 2GUJA 1G79A 3BNKA 3V4HA 1TY9A 4QVBA 1RFEA 2K4QA 2R6VA 1W9AA 3K87A 3DNHA 3ZODA 1XHNA 3ZOFA
chains in the Genus database with same CATH topology
2ECRA 1RZ1A 2HTIA 3A20A 5BNCA 2I02A 1USFA 4IRAA 3SWJA 4HMSA 4XJ2A 2HQ7A 2X1JA 2HTDA 2IG6A 3BA3A 5ESCA 3CB0A 2FURA 3FGEA 4HMVA 1G78A 2HQ9A 3U35A 3B5MA 2D36A 5CHEC 3A6QA 3VY5A 3R5WA 2HHZA 3GASA 2NR4A 2ARZA 3CP3A 3RH7A 2QCKA 4F07A 1DNLA 1WGBA 3TGVA 1FLMA 2D37A 3HY8A 4HMWA 4L82A 3AWHA 2RDEA 3VY2A 2QEAA 3A6RA 3U5WA 3H96A 1JNWA 2ECUA 4HMXA 2FG9A 3ZOHA 2I51A 1RZ0A 1WV4A 2A2JA 3KYGA 3K86A 2X1KA 2FHQA 1W3RA 3U0IA 3R5YA 4R82A 1G76A 3R5ZA 3ZOEA 1YLNA 1W3QA 3DMBA 3R5RA 3PFTA 4YBNA 1USCA 1AXJA 4HX6A 4N7RC 1Y30A 3DB0A 2PTFA 2D5MA 3R5PA 2ED4A 2IABA 4Y9IA 3NFWA 3ZOGA 3EC6A 3FKHA 3K88A 1I0RA 2VPAA 2Q9KA 1G77A 3HMZA 2AQ6A 2IMLA 1YOAA 4ZKYA 3IN6A 2D38A 2R0XA 5JABA 4YWNA 2GJGA 1W3PA 1EJEA 1NRGA 3E4VA 3U34A 2ASFA 3F7EA 4HMUA 2OL5A 2E83A 1T9MA 4XHYA 2RE7A 3R5LA 1XXOA 1CI0A 3AMFA 1WLIA 3BPKA 1VL7A 2OU5A 4Z85A 1W3OA 3ZOCA 1WLKA 3KYFA 3VYAA 1I0SA 4HMTA 5CHOA 1G79A 3BNKA 1TY9A 4QVBA 1RFEA 2R6VA 1W9AA 3K87A 3DNHA 3ZODA 1XHNA 3ZOFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ECR A;  1RZ1 A;  2HTI A;  3A20 A;  5BNC A;  2I02 A;  1USF A;  4IRA A;  3SWJ A;  4HMS A;  4XJ2 A;  2HQ7 A;  2X1J A;  2HTD A;  2IG6 A;  3BA3 A;  5ESC A;  3CB0 A;  2FUR A;  3FGE A;  4HMV A;  1G78 A;  2HQ9 A;  3U35 A;  3B5M A;  2D36 A;  5CHE C;  3A6Q A;  3VY5 A;  3R5W A;  2HHZ A;  3GAS A;  2NR4 A;  2ARZ A;  3CP3 A;  3RH7 A;  2QCK A;  4F07 A;  1DNL A;  1WGB A;  3TGV A;  1FLM A;  2D37 A;  3HY8 A;  4HMW A;  4L82 A;  3AWH A;  2RDE A;  3VY2 A;  2QEA A;  3A6R A;  3U5W A;  3H96 A;  1JNW A;  2ECU A;  4HMX A;  2FG9 A;  3ZOH A;  2I51 A;  1RZ0 A;  1WV4 A;  2A2J A;  3KYG A;  3K86 A;  2X1K A;  2FHQ A;  1W3R A;  3U0I A;  3R5Y A;  4R82 A;  1G76 A;  3R5Z A;  3ZOE A;  1YLN A;  1W3Q A;  3DMB A;  3R5R A;  3PFT A;  4YBN A;  1USC A;  1AXJ A;  4HX6 A;  4N7R C;  1Y30 A;  3DB0 A;  2PTF A;  2D5M A;  3R5P A;  2ED4 A;  2IAB A;  4Y9I A;  3NFW A;  3ZOG A;  3EC6 A;  3FKH A;  3K88 A;  1I0R A;  2VPA A;  2Q9K A;  1G77 A;  3HMZ A;  2AQ6 A;  2IML A;  1YOA A;  4ZKY A;  3IN6 A;  2D38 A;  2R0X A;  5JAB A;  4YWN A;  2GJG A;  1W3P A;  1EJE A;  1NRG A;  3E4V A;  3U34 A;  2ASF A;  3F7E A;  4HMU A;  2OL5 A;  2E83 A;  1T9M A;  4XHY A;  2RE7 A;  3R5L A;  1XXO A;  1CI0 A;  3AMF A;  1WLI A;  3BPK A;  1VL7 A;  2OU5 A;  4Z85 A;  1W3O A;  3ZOC A;  1WLK A;  3KYF A;  3VYA A;  1I0S A;  4HMT A;  5CHO A;  1G79 A;  3BNK A;  1TY9 A;  4QVB A;  1RFE A;  2R6V A;  1W9A A;  3K87 A;  3DNH A;  3ZOD A;  1XHN A;  3ZOF A; 
#chains in the Genus database with same CATH topology
 2ECR A;  3EAA A;  1RZ1 A;  2HTI A;  3A20 A;  5BNC A;  3VKG A;  2I02 A;  4AKI A;  1USF A;  4IRA A;  3SWJ A;  4HMS A;  4XJ2 A;  2HQ7 A;  2X1J A;  2HTD A;  2IG6 A;  3BA3 A;  5ESC A;  3CB0 A;  2FUR A;  3FGE A;  4HMV A;  1G78 A;  2HQ9 A;  3U35 A;  4AKH A;  3B5M A;  2D36 A;  5CHE C;  3A6Q A;  3VY5 A;  2P5Z X;  3R5W A;  2HHZ A;  3GAS A;  2NR4 A;  2ARZ A;  3CP3 A;  3RH7 A;  2QCK A;  4F07 A;  1DNL A;  1WGB A;  3TGV A;  4W64 A;  1FLM A;  2D37 A;  3HY8 A;  4HMW A;  4L82 A;  3AWH A;  2RDE A;  3VY2 A;  2QEA A;  3A6R A;  3U5W A;  3H96 A;  1JNW A;  2ECU A;  4HMX A;  2FG9 A;  3ZOH A;  2I51 A;  1RZ0 A;  1WV4 A;  2A2J A;  3KYG A;  3K86 A;  2FHQ A;  2X1K A;  1W3R A;  3U0I A;  3R5Y A;  4TV4 A;  4R82 A;  1G76 A;  3R5Z A;  3ZOE A;  1YLN A;  1W3Q A;  3DMB A;  3R5R A;  3PFT A;  4YBN A;  1USC A;  1AXJ A;  4HX6 A;  4N7R C;  1Y30 A;  4AKG A;  3DB0 A;  2PTF A;  2D5M A;  3R5P A;  2ED4 A;  4MTK A;  2IAB A;  4Y9I A;  3NFW A;  2L1T A;  1Y12 A;  3ZOG A;  3EC6 A;  3FKH A;  3K88 A;  1I0R A;  2VPA A;  2Q9K A;  1G77 A;  3HMZ A;  2AQ6 A;  2IML A;  1YOA A;  4ZKY A;  3IN6 A;  2D38 A;  2R0X A;  5JAB A;  4YWN A;  2GJG A;  1W3P A;  1EJE A;  1NRG A;  3HE1 A;  3E4V A;  3U34 A;  2ASF A;  3F7E A;  4HMU A;  2OL5 A;  2E83 A;  1T9M A;  4UHV A;  4XHY A;  2RE7 A;  3VKH A;  4HKH A;  3R5L A;  1XXO A;  1CI0 A;  3AMF A;  1WLI A;  3BPK A;  1VL7 A;  2OU5 A;  4Z85 A;  1W3O A;  3ZOC A;  1WLK A;  3KYF A;  3VYA A;  1I0S A;  4HMT A;  5CHO A;  4AI6 A;  2GUJ A;  1G79 A;  3BNK A;  3V4H A;  1TY9 A;  4QVB A;  1RFE A;  2K4Q A;  2R6V A;  1W9A A;  3K87 A;  3DNH A;  3ZOD A;  1XHN A;  3ZOF A; 
#chains in the Genus database with same CATH homology
 2ECR A;  1RZ1 A;  2HTI A;  3A20 A;  5BNC A;  2I02 A;  1USF A;  4IRA A;  3SWJ A;  4HMS A;  4XJ2 A;  2HQ7 A;  2X1J A;  2HTD A;  2IG6 A;  3BA3 A;  5ESC A;  3CB0 A;  2FUR A;  3FGE A;  4HMV A;  1G78 A;  2HQ9 A;  3U35 A;  3B5M A;  2D36 A;  5CHE C;  3A6Q A;  3VY5 A;  3R5W A;  2HHZ A;  3GAS A;  2NR4 A;  2ARZ A;  3CP3 A;  3RH7 A;  2QCK A;  4F07 A;  1DNL A;  1WGB A;  3TGV A;  1FLM A;  2D37 A;  3HY8 A;  4HMW A;  4L82 A;  3AWH A;  2RDE A;  3VY2 A;  2QEA A;  3A6R A;  3U5W A;  3H96 A;  1JNW A;  2ECU A;  4HMX A;  2FG9 A;  3ZOH A;  2I51 A;  1RZ0 A;  1WV4 A;  2A2J A;  3KYG A;  3K86 A;  2X1K A;  2FHQ A;  1W3R A;  3U0I A;  3R5Y A;  4R82 A;  1G76 A;  3R5Z A;  3ZOE A;  1YLN A;  1W3Q A;  3DMB A;  3R5R A;  3PFT A;  4YBN A;  1USC A;  1AXJ A;  4HX6 A;  4N7R C;  1Y30 A;  3DB0 A;  2PTF A;  2D5M A;  3R5P A;  2ED4 A;  2IAB A;  4Y9I A;  3NFW A;  3ZOG A;  3EC6 A;  3FKH A;  3K88 A;  1I0R A;  2VPA A;  2Q9K A;  1G77 A;  3HMZ A;  2AQ6 A;  2IML A;  1YOA A;  4ZKY A;  3IN6 A;  2D38 A;  2R0X A;  5JAB A;  4YWN A;  2GJG A;  1W3P A;  1EJE A;  1NRG A;  3E4V A;  3U34 A;  2ASF A;  3F7E A;  4HMU A;  2OL5 A;  2E83 A;  1T9M A;  4XHY A;  2RE7 A;  3R5L A;  1XXO A;  1CI0 A;  3AMF A;  1WLI A;  3BPK A;  1VL7 A;  2OU5 A;  4Z85 A;  1W3O A;  3ZOC A;  1WLK A;  3KYF A;  3VYA A;  1I0S A;  4HMT A;  5CHO A;  1G79 A;  3BNK A;  1TY9 A;  4QVB A;  1RFE A;  2R6V A;  1W9A A;  3K87 A;  3DNH A;  3ZOD A;  1XHN A;  3ZOF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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