5BW0B

The crystal structure of minor pseudopilin binary complex of xcpv and xcpw from the type 2 secretion system of pseudomonas aeruginosa
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
91
structure length
89
Chain Sequence
NASRLEDKTLAMWIADNRLNELQLEQTPPSSGRNQGELEFAGRRWEWRTQVDSTAEQDMRRVIVWVAAKPLGRGSIEERAAARLVGFLG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein transport
molecule keywords Type II secretion system protein J
publication title Structure-guided disruption of the pseudopilus tip complex inhibits the Type II secretion in Pseudomonas aeruginosa.
pubmed doi rcsb
source organism Pseudomonas aeruginosa
total genus 19
structure length 89
sequence length 91
chains with identical sequence D, F, H
ec nomenclature
pdb deposition date 2015-06-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF02501 T2SSI Type II secretion system (T2SS), protein I
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1300.30 Alpha Beta 2-Layer Sandwich Pantoate--beta-alanine Ligase; Chain: A,domain 2 GSPII I/J protein-like 5bw0B00
3CFIA 2RETA 3CI0I 5BW0B 2GR7A 3EMOA 2GR8A 2LMEA 3CI0K
chains in the Genus database with same CATH superfamily
2G5ZA 1N2IA 1N2EA 4MUGA 3CFHL 3COWA 4IXJA 3IMEA 3UY4A 3HL6A 3N8HA 2A88A 3MXTA 4EF6A 2G3DA 3IOCA 3COYA 3IVXA 5BW0B 4MUHA 3IVCA 4FZJA 4MULA 3QTTA 2A84A 1IHOA 1N2BA 3Q12A 1UFVA 3ISJA 5KWVA 3CI0I 3IMGA 3IMCA 3AG5A 3LE8A 3CI0K 2G2SA 4EFKA 2X3FA 3IOEA 3COVA 2A53A 4G5FA 2GR7A 4BHRA 4MUIA 2GR8A 4MQ6A 2EJCA 1N2OA 4DE5A 3CFAL 3Q10A 4G5YA 2A50A 4DDMA 3COZA 1MOPA 2A54A 1N2JA 2OGFA 2RETA 5EXCA 3EMOA 4MUFA 3IVGA 2G16A 4DDHA 3IODA 1N2HA 2A56A 3UK2A 4DDKA 2LMEA 2A86A 4MUKA 3CFFL 3INNA 4MUJA 3MUEA 3IUEA 2IECA 3UA0A 4MUEA 3IOBA 1V8FA 2A7XA 3AG6A 1N2GA 3LF4A 2A52A 3IUBA 3CFIA 2GW4A 5HG0A 2I52A 5G2FA 4MUNA
chains in the Genus database with same CATH topology
3CFIA 2RETA 3CI0I 5BW0B 2GR7A 3EMOA 3CI0J 2GR8A 2LMEA 3CI0K
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3CFI A;  2RET A;  3CI0 I;  5BW0 B;  2GR7 A;  3EMO A;  2GR8 A;  2LME A;  3CI0 K; 
#chains in the Genus database with same CATH topology
 2G5Z A;  1N2I A;  1N2E A;  4MUG A;  3CFH L;  3COW A;  4IXJ A;  3IME A;  3UY4 A;  3HL6 A;  3N8H A;  2A88 A;  3MXT A;  4EF6 A;  2G3D A;  3IOC A;  3COY A;  3IVX A;  5BW0 B;  4MUH A;  3IVC A;  4FZJ A;  4MUL A;  3QTT A;  2A84 A;  1IHO A;  1N2B A;  3Q12 A;  1UFV A;  3ISJ A;  5KWV A;  3CI0 I;  3IMG A;  3IMC A;  3AG5 A;  3LE8 A;  3CI0 K;  2G2S A;  4EFK A;  2X3F A;  3IOE A;  3COV A;  2A53 A;  4G5F A;  2GR7 A;  4BHR A;  4MUI A;  2GR8 A;  4MQ6 A;  2EJC A;  1N2O A;  4DE5 A;  3CFA L;  3Q10 A;  4G5Y A;  2A50 A;  4DDM A;  3COZ A;  1MOP A;  2A54 A;  1N2J A;  2OGF A;  2RET A;  5EXC A;  3EMO A;  4MUF A;  3IVG A;  2G16 A;  4DDH A;  3IOD A;  1N2H A;  2A56 A;  3UK2 A;  4DDK A;  2LME A;  2A86 A;  4MUK A;  3CFF L;  3INN A;  4MUJ A;  3MUE A;  3IUE A;  2IEC A;  3UA0 A;  4MUE A;  3IOB A;  1V8F A;  2A7X A;  3AG6 A;  1N2G A;  3LF4 A;  2A52 A;  3IUB A;  3CFI A;  2GW4 A;  5HG0 A;  2I52 A;  5G2F A;  4MUN A; 
#chains in the Genus database with same CATH homology
 3CFI A;  2RET A;  3CI0 I;  5BW0 B;  2GR7 A;  3EMO A;  3CI0 J;  2GR8 A;  2LME A;  3CI0 K; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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