5D8CA

Crystal structure of hinmlr, a merr family regulator lacking the sensor domain, bound to promoter dna
Total Genus 47
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
47
sequence length
126
structure length
126
Chain Sequence
MTYTTAKAAEKIGISAYTLRFYDKEGLLPNVGRDEYGNRRFTDKDLQWLSLLQCLKNTGMSLKDIKRFAECTIIGDDTIEERLSLFENQTKNVKCQIAELKRYLDLLEYKLAFYQKAKALGSVKAV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription/dna
molecule keywords MerR family regulator protein
publication title Structural basis of thiol-based regulation of formaldehyde detoxification in H. influenzae by a MerR regulator with no sensor region.
pubmed doi rcsb
source organism Haemophilus influenzae (strain atcc 51907 / dsm 11121 / kw20 / rd)
total genus 47
structure length 126
sequence length 126
chains with identical sequence B
ec nomenclature
pdb deposition date 2015-08-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00376 MerR MerR family regulatory protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1660.10 Mainly Alpha Orthogonal Bundle Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 5d8cA00
3D6ZA 5D90A 5I41B 3Q2YA 4WLSA 1Q0AA 1Q08A 2ZHHA 3IAOA 3QAOA 3Q3DA 3D71A 1Q06A 1Q07A 4R4EA 3GP4A 3D70A 5E01A 4R22B 1Q09A 1JBGA 3Q1MA 1R8EA 2VZ4A 3HH0A 4J2NA 1R8DA 4WLWA 3Q5RA 2JMLA 1EXJA 2DG6A 1Q05A 2ZHGA 3Q5PA 5D8CA 3Q5SA 3D6YA 5I44A 4R24B 3UCSA 3GPVA 1EXIA
chains in the Genus database with same CATH superfamily
3D6ZA 5D90A 5I41B 3Q2YA 4WLSA 1Q0AA 1Q08A 2ZHHA 3IAOA 3QAOA 3Q3DA 3D71A 1Q06A 1Q07A 3EZ9A 4R4EA 2OG0A 3GP4A 3D70A 5E01A 4R22B 2KVVA 1Q09A 1JBGA 1RH6A 3Q1MA 3GPVA 1Y6UA 2VZ4A 1R8EA 4DCZA 1LX8A 3EZ6A 3EZFA 3HH0A 4J2NA 1R8DA 1PM6A 4WLWA 3EZ7A 3Q5RA 2JMLA 1EXJA 2DG6A 1Q05A 2ZHGA 3Q5PA 5D8CA 3Q5SA 3D6YA 4LHFA 5I44A 4R24B 2IEFA 3UCSA 3EZ2A 1EXIA
chains in the Genus database with same CATH topology
3D6ZA 5D90A 5I41B 3Q2YA 4WLSA 1Q0AA 1Q08A 2ZHHA 3IAOA 3QAOA 3Q3DA 3D71A 1Q06A 1Q07A 3EZ9A 4R4EA 2OG0A 3GP4A 3D70A 5E01A 4R22B 2KVVA 1Q09A 1JBGA 1RH6A 3Q1MA 3GPVA 1Y6UA 2VZ4A 1R8EA 4DCZA 1LX8A 3EZ6A 3EZFA 3HH0A 4J2NA 1R8DA 1PM6A 4WLWA 3EZ7A 3Q5RA 2JMLA 1EXJA 2DG6A 1Q05A 2ZHGA 3Q5PA 5D8CA 3Q5SA 3D6YA 4LHFA 5I44A 4R24B 2IEFA 3UCSA 3EZ2A 1EXIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3D6Z A;  5D90 A;  5I41 B;  3Q2Y A;  4WLS A;  1Q0A A;  1Q08 A;  2ZHH A;  3IAO A;  3QAO A;  3Q3D A;  3D71 A;  1Q06 A;  1Q07 A;  4R4E A;  3GP4 A;  3D70 A;  5E01 A;  4R22 B;  1Q09 A;  1JBG A;  3Q1M A;  1R8E A;  2VZ4 A;  3HH0 A;  4J2N A;  1R8D A;  4WLW A;  3Q5R A;  2JML A;  1EXJ A;  2DG6 A;  1Q05 A;  2ZHG A;  3Q5P A;  5D8C A;  3Q5S A;  3D6Y A;  5I44 A;  4R24 B;  3UCS A;  3GPV A;  1EXI A; 
#chains in the Genus database with same CATH topology
 3D6Z A;  5D90 A;  5I41 B;  3Q2Y A;  4WLS A;  1Q0A A;  1Q08 A;  2ZHH A;  3IAO A;  3QAO A;  3Q3D A;  3D71 A;  1Q06 A;  1Q07 A;  3EZ9 A;  4R4E A;  2OG0 A;  3GP4 A;  3D70 A;  5E01 A;  4R22 B;  2KVV A;  1Q09 A;  1JBG A;  1RH6 A;  3Q1M A;  3GPV A;  1Y6U A;  2VZ4 A;  1R8E A;  4DCZ A;  1LX8 A;  3EZ6 A;  3EZF A;  3HH0 A;  4J2N A;  1R8D A;  1PM6 A;  4WLW A;  3EZ7 A;  3Q5R A;  2JML A;  1EXJ A;  2DG6 A;  1Q05 A;  2ZHG A;  3Q5P A;  5D8C A;  3Q5S A;  3D6Y A;  4LHF A;  5I44 A;  4R24 B;  2IEF A;  3UCS A;  3EZ2 A;  1EXI A; 
#chains in the Genus database with same CATH homology
 3D6Z A;  5D90 A;  5I41 B;  3Q2Y A;  4WLS A;  1Q0A A;  1Q08 A;  2ZHH A;  3IAO A;  3QAO A;  3Q3D A;  3D71 A;  1Q06 A;  1Q07 A;  3EZ9 A;  4R4E A;  2OG0 A;  3GP4 A;  3D70 A;  5E01 A;  4R22 B;  2KVV A;  1Q09 A;  1JBG A;  1RH6 A;  3Q1M A;  3GPV A;  1Y6U A;  2VZ4 A;  1R8E A;  4DCZ A;  1LX8 A;  3EZ6 A;  3EZF A;  3HH0 A;  4J2N A;  1R8D A;  1PM6 A;  4WLW A;  3EZ7 A;  3Q5R A;  2JML A;  1EXJ A;  2DG6 A;  1Q05 A;  2ZHG A;  3Q5P A;  5D8C A;  3Q5S A;  3D6Y A;  4LHF A;  5I44 A;  4R24 B;  2IEF A;  3UCS A;  3EZ2 A;  1EXI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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