5E3BA

Structure of macrodomain protein from streptomyces coelicolor
Total Genus 52
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
52
sequence length
156
structure length
148
Chain Sequence
EISYVRGDATAPSVKGVKMIAHVCNDLGGWGKGFVLAVSRRWPQPEAAYRAWHRDRAANDFGLGAVQFVQVEPYVWVANMIGQHGMKPVRYEAIGTALGRVADRAAELEASVHLPRIGLAGGTWSRVEPLISDRLTRRGIPVTVYDHG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Macrodomain protein
publication title Disruption of Macrodomain Protein SCO6735 Increases Antibiotic Production in Streptomyces coelicolor.
pubmed doi rcsb
source organism Streptomyces coelicolor (strain atcc baa-471 / a3(2) / m145)
total genus 52
structure length 148
sequence length 156
ec nomenclature
pdb deposition date 2015-10-02
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.220.10 Alpha Beta 3-Layer(aba) Sandwich Leucine Aminopeptidase, subunit E; domain 1 Leucine Aminopeptidase, subunit E, domain 1 5e3bA00
3EWQA 1BPNA 4R6TA 1TXZA 5D8NA 3JZTA 3Q6ZA 4K3NA 4R76A 4JGKA 3V2BA 4ZX9A 4ABLA 4IQYA 3EJGA 2FG1A 2FXKA 5FSUA 1SPVA 5HOLA 1LCPA 3GQOA 4TU0A 2BFQA 3VFQA 3KQZA 3Q71A 3KZWA 2DX6A 3SIGA 1LAPA 4ESSA 2FAVA 3GPOA 3ETIA 5CBMA 4J5RA 1BPMA 4ETJA 3SIHA 1NJRA 3IIDA 2EWBA 2L8RA 3EKEA 4GUAA 5FSYA 2LGRA 4KSIA 3KR5A 4J5QA 4ZYQA 3V45A 4GVVA 2VRIA 3GQEA 4J4ZA 4ZI6A 4ETKA 1HJZA 1YD9A 3KR4A 3H8GA 5DUSA 3EJFA 5CB5A 1VHUA 1ZR3A 3H8FA 5AILA 4R7MA 3IIFA 3SIJA 4JCAA 3EW5A 1GYTA 5E3BA 4ZY0A 2J9AA 4UMLA 2AFCA 3KQXA 3IJ3A 3GPGA 2X47A 4D86A 4GVWA 4JVVA 2ACFA 5CMSA 5HIHA 1TY8A 4ZY1A 3JRUA 2BFRA 5CB3A 3EWOA 3GPQA 4KYBA 3EWPA 1BLLE 2XD7A 3EWRA 3SIIA 4ZY2A 3H8EA 3T8WA 4ZX8A 3PEIA 4JLLA 2EEEA 5FSVA 4K0CA 1LANA 4X2TA 1ZR5A 4J5SA 1LAMA 5FSZA 5FSXA 4ABKA
chains in the Genus database with same CATH superfamily
3EWQA 1BPNA 4R6TA 1TXZA 5D8NA 3JZTA 3Q6ZA 2JZEA 4K3NA 4R76A 4JGKA 3V2BA 4ZX9A 4ABLA 4IQYA 3EJGA 2FG1A 2FXKA 5FSUA 2RNKA 1SPVA 5HOLA 1LCPA 2W2GA 3GQOA 4TU0A 2BFQA 3VFQA 3KQZA 3Q71A 3KZWA 2DX6A 3SIGA 1LAPA 4ESSA 2FAVA 3GPOA 3ETIA 5CBMA 4J5RA 1BPMA 4ETJA 3SIHA 1NJRA 3IIDA 2EWBA 2L8RA 3EKEA 4GUAA 5FSYA 2LGRA 2KQVA 4KSIA 3KR5A 4J5QA 4ZYQA 3V45A 4GVVA 2VRIA 3GQEA 4J4ZA 4ZI6A 4ETKA 1HJZA 1YD9A 3KR4A 3H8GA 2JZDA 3EJFA 5DUSA 5CB5A 1VHUA 1ZR3A 3H8FA 5AILA 4R7MA 3IIFA 3SIJA 4JCAA 3EW5A 1GYTA 5E3BA 4ZY0A 2J9AA 4UMLA 2WCTA 2AFCA 3KQXA 3IJ3A 3GPGA 2X47A 4D86A 4GVWA 4JVVA 2ACFA 5CMSA 5HIHA 1TY8A 4ZY1A 3JRUA 2BFRA 5CB3A 3EWOA 3GPQA 4KYBA 3EWPA 1BLLE 2XD7A 3EWRA 3SIIA 4ZY2A 3H8EA 3T8WA 4ZX8A 3PEIA 4JLLA 2EEEA 2JZFA 5FSVA 4K0CA 1LANA 4X2TA 1ZR5A 4J5SA 1LAMA 5FSZA 5FSXA 4ABKA
chains in the Genus database with same CATH topology
3EWQA 1BPNA 4R6TA 1TXZA 5D8NA 3JZTA 3Q6ZA 4K3NA 4R76A 4JGKA 3V2BA 4ZX9A 4ABLA 4IQYA 3EJGA 2FG1A 2FXKA 5FSUA 1SPVA 5HOLA 1LCPA 3GQOA 4TU0A 2BFQA 3VFQA 3KQZA 3Q71A 3KZWA 2DX6A 3SIGA 1LAPA 4ESSA 2FAVA 3GPOA 3ETIA 5CBMA 4J5RA 1BPMA 4ETJA 3SIHA 1NJRA 3IIDA 2EWBA 2L8RA 3EKEA 4GUAA 5FSYA 2LGRA 4KSIA 3KR5A 4J5QA 4ZYQA 3V45A 4GVVA 2VRIA 3GQEA 4J4ZA 4ZI6A 4ETKA 1HJZA 1YD9A 3KR4A 3H8GA 5DUSA 3EJFA 5CB5A 1VHUA 1ZR3A 3H8FA 5AILA 4R7MA 3IIFA 3SIJA 4JCAA 3EW5A 1GYTA 5E3BA 4ZY0A 2J9AA 4UMLA 2AFCA 3KQXA 3IJ3A 3GPGA 2X47A 4D86A 4GVWA 4JVVA 2ACFA 5CMSA 5HIHA 1TY8A 4ZY1A 3JRUA 2BFRA 5CB3A 3EWOA 3GPQA 4KYBA 3EWPA 1BLLE 2XD7A 3EWRA 3SIIA 4ZY2A 3H8EA 3T8WA 4ZX8A 3PEIA 4JLLA 2EEEA 5FSVA 4K0CA 1LANA 4X2TA 1ZR5A 4J5SA 1LAMA 5FSZA 5FSXA 4ABKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3EWQ A;  1BPN A;  4R6T A;  1TXZ A;  5D8N A;  3JZT A;  3Q6Z A;  4K3N A;  4R76 A;  4JGK A;  3V2B A;  4ZX9 A;  4ABL A;  4IQY A;  3EJG A;  2FG1 A;  2FXK A;  5FSU A;  1SPV A;  5HOL A;  1LCP A;  3GQO A;  4TU0 A;  2BFQ A;  3VFQ A;  3KQZ A;  3Q71 A;  3KZW A;  2DX6 A;  3SIG A;  1LAP A;  4ESS A;  2FAV A;  3GPO A;  3ETI A;  5CBM A;  4J5R A;  1BPM A;  4ETJ A;  3SIH A;  1NJR A;  3IID A;  2EWB A;  2L8R A;  3EKE A;  4GUA A;  5FSY A;  2LGR A;  4KSI A;  3KR5 A;  4J5Q A;  4ZYQ A;  3V45 A;  4GVV A;  2VRI A;  3GQE A;  4J4Z A;  4ZI6 A;  4ETK A;  1HJZ A;  1YD9 A;  3KR4 A;  3H8G A;  5DUS A;  3EJF A;  5CB5 A;  1VHU A;  1ZR3 A;  3H8F A;  5AIL A;  4R7M A;  3IIF A;  3SIJ A;  4JCA A;  3EW5 A;  1GYT A;  5E3B A;  4ZY0 A;  2J9A A;  4UML A;  2AFC A;  3KQX A;  3IJ3 A;  3GPG A;  2X47 A;  4D86 A;  4GVW A;  4JVV A;  2ACF A;  5CMS A;  5HIH A;  1TY8 A;  4ZY1 A;  3JRU A;  2BFR A;  5CB3 A;  3EWO A;  3GPQ A;  4KYB A;  3EWP A;  1BLL E;  2XD7 A;  3EWR A;  3SII A;  4ZY2 A;  3H8E A;  3T8W A;  4ZX8 A;  3PEI A;  4JLL A;  2EEE A;  5FSV A;  4K0C A;  1LAN A;  4X2T A;  1ZR5 A;  4J5S A;  1LAM A;  5FSZ A;  5FSX A;  4ABK A; 
#chains in the Genus database with same CATH topology
 3EWQ A;  1BPN A;  4R6T A;  1TXZ A;  5D8N A;  3JZT A;  3Q6Z A;  2JZE A;  4K3N A;  4R76 A;  4JGK A;  3V2B A;  4ZX9 A;  4ABL A;  4IQY A;  3EJG A;  2FG1 A;  2FXK A;  5FSU A;  2RNK A;  1SPV A;  5HOL A;  1LCP A;  2W2G A;  3GQO A;  4TU0 A;  2BFQ A;  3VFQ A;  3KQZ A;  3Q71 A;  3KZW A;  2DX6 A;  3SIG A;  1LAP A;  4ESS A;  2FAV A;  3GPO A;  3ETI A;  5CBM A;  4J5R A;  1BPM A;  4ETJ A;  3SIH A;  1NJR A;  3IID A;  2EWB A;  2L8R A;  3EKE A;  4GUA A;  5FSY A;  2LGR A;  2KQV A;  4KSI A;  3KR5 A;  4J5Q A;  4ZYQ A;  3V45 A;  4GVV A;  2VRI A;  3GQE A;  4J4Z A;  4ZI6 A;  4ETK A;  1HJZ A;  1YD9 A;  3KR4 A;  3H8G A;  2JZD A;  3EJF A;  5DUS A;  5CB5 A;  1VHU A;  1ZR3 A;  3H8F A;  5AIL A;  4R7M A;  3IIF A;  3SIJ A;  4JCA A;  3EW5 A;  1GYT A;  5E3B A;  4ZY0 A;  2J9A A;  4UML A;  2WCT A;  2AFC A;  3KQX A;  3IJ3 A;  3GPG A;  2X47 A;  4D86 A;  4GVW A;  4JVV A;  2ACF A;  5CMS A;  5HIH A;  1TY8 A;  4ZY1 A;  3JRU A;  2BFR A;  5CB3 A;  3EWO A;  3GPQ A;  4KYB A;  3EWP A;  1BLL E;  2XD7 A;  3EWR A;  3SII A;  4ZY2 A;  3H8E A;  3T8W A;  4ZX8 A;  3PEI A;  4JLL A;  2EEE A;  2JZF A;  5FSV A;  4K0C A;  1LAN A;  4X2T A;  1ZR5 A;  4J5S A;  1LAM A;  5FSZ A;  5FSX A;  4ABK A; 
#chains in the Genus database with same CATH homology
 3EWQ A;  1BPN A;  4R6T A;  1TXZ A;  5D8N A;  3JZT A;  3Q6Z A;  4K3N A;  4R76 A;  4JGK A;  3V2B A;  4ZX9 A;  4ABL A;  4IQY A;  3EJG A;  2FG1 A;  2FXK A;  5FSU A;  1SPV A;  5HOL A;  1LCP A;  3GQO A;  4TU0 A;  2BFQ A;  3VFQ A;  3KQZ A;  3Q71 A;  3KZW A;  2DX6 A;  3SIG A;  1LAP A;  4ESS A;  2FAV A;  3GPO A;  3ETI A;  5CBM A;  4J5R A;  1BPM A;  4ETJ A;  3SIH A;  1NJR A;  3IID A;  2EWB A;  2L8R A;  3EKE A;  4GUA A;  5FSY A;  2LGR A;  4KSI A;  3KR5 A;  4J5Q A;  4ZYQ A;  3V45 A;  4GVV A;  2VRI A;  3GQE A;  4J4Z A;  4ZI6 A;  4ETK A;  1HJZ A;  1YD9 A;  3KR4 A;  3H8G A;  5DUS A;  3EJF A;  5CB5 A;  1VHU A;  1ZR3 A;  3H8F A;  5AIL A;  4R7M A;  3IIF A;  3SIJ A;  4JCA A;  3EW5 A;  1GYT A;  5E3B A;  4ZY0 A;  2J9A A;  4UML A;  2AFC A;  3KQX A;  3IJ3 A;  3GPG A;  2X47 A;  4D86 A;  4GVW A;  4JVV A;  2ACF A;  5CMS A;  5HIH A;  1TY8 A;  4ZY1 A;  3JRU A;  2BFR A;  5CB3 A;  3EWO A;  3GPQ A;  4KYB A;  3EWP A;  1BLL E;  2XD7 A;  3EWR A;  3SII A;  4ZY2 A;  3H8E A;  3T8W A;  4ZX8 A;  3PEI A;  4JLL A;  2EEE A;  5FSV A;  4K0C A;  1LAN A;  4X2T A;  1ZR5 A;  4J5S A;  1LAM A;  5FSZ A;  5FSX A;  4ABK A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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