5E50A

Aplf/xrcc4 complex
Total Genus 16
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
16
sequence length
110
structure length
110
Chain Sequence
GPLGSMSGGFELQPRDGGPRVALAPGETVIGRGPLLGITDKRVSRRHAILEVAGGQLRIKPIHTNPCFYQSSEKSQLLPLKPNLWCYLNPGDSFSMLVDKYIFRILSIPS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
molecule keywords Aprataxin and PNK-like factor
publication title Versatility in phospho-dependent molecular recognition of the XRCC1 and XRCC4 DNA-damage scaffolds by aprataxin-family FHA domains.
pubmed doi rcsb
source organism Homo sapiens
total genus 16
structure length 110
sequence length 110
chains with identical sequence B
ec nomenclature ec 4.2.99.18: DNA-(apurinic or apyrimidinic site) lyase.
pdb deposition date 2015-10-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF17913 FHA_2 FHA domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.200.20 Mainly Beta Sandwich Tumour Suppressor Smad4 Tumour Suppressor Smad4 5e50A01
1WLNA 3VA1A 1J4OA 2JKDA 1J4LA 1DMZA 2JQJA 2KFUA 3ELVA 4JONA 3UNMA 5DJOA 1G3GA 1K2MA 4EJQA 3MDBA 2FF4A 1WV3A 1GXCA 2CSWA 3POAA 1J4KA 1J4PA 1K3NA 3ELSA 3FM8A 2JQLA 3I6UA 3OUNA 1K2NA 3UN0A 3KT9A 2KKLA 1K3JA 3UMZA 1LGPA 1UHTA 4A0EA 1FHQA 1FHRA 3VPYA 2PIEA 1UJXA 3GQSA 1J4QA 4G2SA 3HUFA 1YJ5C 2KB4A 2FEZA 1QU5A 1G6GA 2JPEA 3UNNA 2G1LA 1LGQA 1YJMA 2JQIA 3I0NA 2AFFA 2EH0A 3HUEA 2KB3A 3I0MA 1R21A 2W3OA 2LC1A 5A8IA 2BRFA 4EGXA 2XT9B 3PO8A 3UOTA 1K3QA 3VA4A 2A0TA 4QCJA 3HX1A 1MZKA 4D9VA 3I6WA 3UV0A 5E50A 4H87A
chains in the Genus database with same CATH superfamily
1WLNA 3VA1A 1J4OA 1U7FB 2BONA 5DHQA 2I1WA 1Z0ZA 3V7YA 2JKDA 1J4LA 1DMZA 5JEOA 2JQJA 2KFUA 5DHUA 4HAOA 1KHUA 3A77A 1U0TA 3ELVA 2JGRA 4JONA 1Z0SA 2AN1A 3UNMA 3VZCA 3DITA 5DJOA 1G3GA 1K2MA 4EJQA 3MDBA 2FF4A 1WV3A 1GXCA 3V7UA 3VZDA 2CSWA 3POAA 5EJIA 3V8PA 1J4KA 1J4PA 5DHSA 1K3NA 5EJFA 3ELSA 3V7WA 3FM8A 2JQLA 1QWTA 3I6UA 3GMJA 3OUNA 1YT5A 4L02A 5EJHA 4WRRA 1Z0UA 3UN0A 2I2AA 5JEJA 3KT9A 2KKLA 2Q5FA 5JELA 1K3JA 3UMZA 5JEMA 1Y3IA 1LGPA 1UHTA 4A0EA 4KU0D 4A4YA 3V80A 1ZOQA 1U7VA 3PFNA 1FHQA 3S40A 1YGSA 2I2FA 1FHRA 3VPYA 2PIEA 1U0RA 1UJXA 3GQSA 4WERA 1J4QA 4G2SA 3HUFA 5DHPA 3VZBA 1YJ5C 2KB4A 2I2BA 5DHTA 2FEZA 4V24A 1MK2A 1QU5A 1U7VB 3DSHA 1Y3HA 4JIWD 1G6GA 2JPEA 3UNNA 5JEKA 2QV7A 2G1LA 1LGQA 5BVIA 1YJMA 2JQIA 3I0NA 3V8QA 4JIVD 2AFFA 2EH0A 2KB3A 3HUEA 5C4VA 3I0MA 1K2NA 3V8NA 2P1RA 1R21A 5JERA 2W3OA 2LC1A 1MJSA 1SUWA 5A8IA 2BRFA 4EGXA 2XT9B 2I2CA 3V8MA 3PO8A 3UOTA 1J2FA 1KHXA 1K3QA 3VA4A 3AFOA 1DEVA 1U7FA 2A0TA 4QCJA 2XXSA 1DD1A 3HX1A 4R9PA 2I29A 4DY6A 3T5PA 1MR1A 1MZKA 5DHRA 4D9VA 2QVLA 3I6WA 3UV0A 5E50A 5EJGA 3V8RA 1G88A 2I2DA 4H87A
chains in the Genus database with same CATH topology
1WLNA 3VA1A 1J4OA 1U7FB 2BONA 2JKDA 1J4LA 1DMZA 5JEOA 2JQJA 2KFUA 1KHUA 3A77A 3ELVA 2JGRA 4JONA 3UNMA 3VZCA 3DITA 5DJOA 1G3GA 1K2MA 4EJQA 3MDBA 2FF4A 1WV3A 1GXCA 3VZDA 2CSWA 3POAA 1J4KA 1J4PA 1K3NA 3ELSA 3FM8A 2JQLA 1QWTA 3I6UA 3GMJA 3OUNA 4L02A 1K2NA 4WRRA 3UN0A 5JEJA 3KT9A 2KKLA 5JELA 1K3JA 3UMZA 5JEMA 1LGPA 1UHTA 4A0EA 4KU0D 4A4YA 1ZOQA 1U7VA 1FHQA 3S40A 1YGSA 1FHRA 3VPYA 2PIEA 1UJXA 3GQSA 4WERA 1J4QA 4G2SA 3HUFA 3VZBA 1YJ5C 2KB4A 2FEZA 4V24A 1MK2A 1QU5A 1U7VB 3DSHA 4JIWD 1G6GA 2JPEA 3UNNA 5JEKA 2QV7A 2G1LA 1LGQA 5BVIA 1YJMA 2JQIA 3I0NA 4JIVD 2AFFA 2EH0A 3HUEA 2KB3A 5C4VA 3I0MA 2P1RA 1R21A 5JERA 2W3OA 2LC1A 1MJSA 5A8IA 2BRFA 4EGXA 2XT9B 3PO8A 3UOTA 1J2FA 1KHXA 1K3QA 3VA4A 1DEVA 1U7FA 2A0TA 4QCJA 2XXSA 1DD1A 3HX1A 4R9PA 3T5PA 1MR1A 1MZKA 4D9VA 2QVLA 3I6WA 3UV0A 5E50A 1G88A 4H87A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1WLN A;  3VA1 A;  1J4O A;  2JKD A;  1J4L A;  1DMZ A;  2JQJ A;  2KFU A;  3ELV A;  4JON A;  3UNM A;  5DJO A;  1G3G A;  1K2M A;  4EJQ A;  3MDB A;  2FF4 A;  1WV3 A;  1GXC A;  2CSW A;  3POA A;  1J4K A;  1J4P A;  1K3N A;  3ELS A;  3FM8 A;  2JQL A;  3I6U A;  3OUN A;  1K2N A;  3UN0 A;  3KT9 A;  2KKL A;  1K3J A;  3UMZ A;  1LGP A;  1UHT A;  4A0E A;  1FHQ A;  1FHR A;  3VPY A;  2PIE A;  1UJX A;  3GQS A;  1J4Q A;  4G2S A;  3HUF A;  1YJ5 C;  2KB4 A;  2FEZ A;  1QU5 A;  1G6G A;  2JPE A;  3UNN A;  2G1L A;  1LGQ A;  1YJM A;  2JQI A;  3I0N A;  2AFF A;  2EH0 A;  3HUE A;  2KB3 A;  3I0M A;  1R21 A;  2W3O A;  2LC1 A;  5A8I A;  2BRF A;  4EGX A;  2XT9 B;  3PO8 A;  3UOT A;  1K3Q A;  3VA4 A;  2A0T A;  4QCJ A;  3HX1 A;  1MZK A;  4D9V A;  3I6W A;  3UV0 A;  5E50 A;  4H87 A; 
#chains in the Genus database with same CATH topology
 1WLN A;  3VA1 A;  1J4O A;  1U7F B;  2BON A;  5DHQ A;  2I1W A;  1Z0Z A;  3V7Y A;  2JKD A;  1J4L A;  1DMZ A;  5JEO A;  2JQJ A;  2KFU A;  5DHU A;  4HAO A;  1KHU A;  3A77 A;  1U0T A;  3ELV A;  2JGR A;  4JON A;  1Z0S A;  2AN1 A;  3UNM A;  3VZC A;  3DIT A;  5DJO A;  1G3G A;  1K2M A;  4EJQ A;  3MDB A;  2FF4 A;  1WV3 A;  1GXC A;  3V7U A;  3VZD A;  2CSW A;  3POA A;  5EJI A;  3V8P A;  1J4K A;  1J4P A;  5DHS A;  1K3N A;  5EJF A;  3ELS A;  3V7W A;  3FM8 A;  2JQL A;  1QWT A;  3I6U A;  3GMJ A;  3OUN A;  1YT5 A;  4L02 A;  5EJH A;  4WRR A;  1Z0U A;  3UN0 A;  2I2A A;  5JEJ A;  3KT9 A;  2KKL A;  2Q5F A;  5JEL A;  1K3J A;  3UMZ A;  5JEM A;  1Y3I A;  1LGP A;  1UHT A;  4A0E A;  4KU0 D;  4A4Y A;  3V80 A;  1ZOQ A;  1U7V A;  3PFN A;  1FHQ A;  3S40 A;  1YGS A;  2I2F A;  1FHR A;  3VPY A;  2PIE A;  1U0R A;  1UJX A;  3GQS A;  4WER A;  1J4Q A;  4G2S A;  3HUF A;  5DHP A;  3VZB A;  1YJ5 C;  2KB4 A;  2I2B A;  5DHT A;  2FEZ A;  4V24 A;  1MK2 A;  1QU5 A;  1U7V B;  3DSH A;  1Y3H A;  4JIW D;  1G6G A;  2JPE A;  3UNN A;  5JEK A;  2QV7 A;  2G1L A;  1LGQ A;  5BVI A;  1YJM A;  2JQI A;  3I0N A;  3V8Q A;  4JIV D;  2AFF A;  2EH0 A;  2KB3 A;  3HUE A;  5C4V A;  3I0M A;  1K2N A;  3V8N A;  2P1R A;  1R21 A;  5JER A;  2W3O A;  2LC1 A;  1MJS A;  1SUW A;  5A8I A;  2BRF A;  4EGX A;  2XT9 B;  2I2C A;  3V8M A;  3PO8 A;  3UOT A;  1J2F A;  1KHX A;  1K3Q A;  3VA4 A;  3AFO A;  1DEV A;  1U7F A;  2A0T A;  4QCJ A;  2XXS A;  1DD1 A;  3HX1 A;  4R9P A;  2I29 A;  4DY6 A;  3T5P A;  1MR1 A;  1MZK A;  5DHR A;  4D9V A;  2QVL A;  3I6W A;  3UV0 A;  5E50 A;  5EJG A;  3V8R A;  1G88 A;  2I2D A;  4H87 A; 
#chains in the Genus database with same CATH homology
 1WLN A;  3VA1 A;  1J4O A;  1U7F B;  2BON A;  2JKD A;  1J4L A;  1DMZ A;  5JEO A;  2JQJ A;  2KFU A;  1KHU A;  3A77 A;  3ELV A;  2JGR A;  4JON A;  3UNM A;  3VZC A;  3DIT A;  5DJO A;  1G3G A;  1K2M A;  4EJQ A;  3MDB A;  2FF4 A;  1WV3 A;  1GXC A;  3VZD A;  2CSW A;  3POA A;  1J4K A;  1J4P A;  1K3N A;  3ELS A;  3FM8 A;  2JQL A;  1QWT A;  3I6U A;  3GMJ A;  3OUN A;  4L02 A;  1K2N A;  4WRR A;  3UN0 A;  5JEJ A;  3KT9 A;  2KKL A;  5JEL A;  1K3J A;  3UMZ A;  5JEM A;  1LGP A;  1UHT A;  4A0E A;  4KU0 D;  4A4Y A;  1ZOQ A;  1U7V A;  1FHQ A;  3S40 A;  1YGS A;  1FHR A;  3VPY A;  2PIE A;  1UJX A;  3GQS A;  4WER A;  1J4Q A;  4G2S A;  3HUF A;  3VZB A;  1YJ5 C;  2KB4 A;  2FEZ A;  4V24 A;  1MK2 A;  1QU5 A;  1U7V B;  3DSH A;  4JIW D;  1G6G A;  2JPE A;  3UNN A;  5JEK A;  2QV7 A;  2G1L A;  1LGQ A;  5BVI A;  1YJM A;  2JQI A;  3I0N A;  4JIV D;  2AFF A;  2EH0 A;  3HUE A;  2KB3 A;  5C4V A;  3I0M A;  2P1R A;  1R21 A;  5JER A;  2W3O A;  2LC1 A;  1MJS A;  5A8I A;  2BRF A;  4EGX A;  2XT9 B;  3PO8 A;  3UOT A;  1J2F A;  1KHX A;  1K3Q A;  3VA4 A;  1DEV A;  1U7F A;  2A0T A;  4QCJ A;  2XXS A;  1DD1 A;  3HX1 A;  4R9P A;  3T5P A;  1MR1 A;  1MZK A;  4D9V A;  2QVL A;  3I6W A;  3UV0 A;  5E50 A;  1G88 A;  4H87 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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