5EEKA

Crystal structure of danio rerio histone deacetylase 6 catalytic domain 2 in complex with trichostatin a
Total Genus 145
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
145
sequence length
358
structure length
356
Chain Sequence
SPITGLVYDQRMMLHHNMWDSHHPELPQRISRIFSRHEELRLLSRCHRIPARLATEEELALCHSSKHISIIKSSEHMKPRDLNRLGDEYNSIFISNESYTCALLAAGSCFNSAQAILTGQVRNAVAIVRPPGHHAEKDTACGFCFFNTAALTARYAQSITRESLRVLIVDWDVHHGNGTQHIFEEDDSVLYISLHRYEDGAFFPNSEDANYDKVGLGKGRGYNVNIPWNGGKMGDPEYMAAFHHLVMPIAREFAPELVLVSAGFDAARGDPLGGFQVTPEGYAHLTHQLMSLAAGRVLIILEGGYNLTSISESMSMCTSMLLGDSPPSLLTPLKTSATVSINNVLRAHAPFWSSLR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase/hydrolase inhibitor
molecule keywords Hdac6 protein
publication title Histone deacetylase 6 structure and molecular basis of catalysis and inhibition.
pubmed doi rcsb
source organism Danio rerio
total genus 145
structure length 356
sequence length 358
ec nomenclature ec 3.5.1.98: Histone deacetylase.
pdb deposition date 2015-10-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00850 Hist_deacetyl Histone deacetylase domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.800.20 Alpha Beta 3-Layer(aba) Sandwich Arginase; Chain A Histone deacetylase domain 5eekA00
5DC8A 3MAXA 4QA4A 1C3RA 4RN0A 4BZ7A 5EEIA 1ZZ0A 3C0YA 5THUA 1C3PA 5G0HA 1VKGA 4QA3A 4ZUNA 5A2SA 5D1CA 5EENA 2V5XA 5FCWA 4ZUOA 5G0GA 5G13A 1T69A 5DC7A 5BWZA 5LI3A 3MZ3A 5G11A 3C10A 5ICNB 3Q9CA 5G0XA 5EF8A 4RN2A 3SFFA 5G1AA 3F07A 5G12A 4LXZA 5G0YA 3MZ4A 5G0JA 3F0RA 5EEKA 2GH6A 5G0IA 3MENA 3ZNRA 5G1CA 3EZPA 4ZUQA 2VQQA 3RQDA 2VCGA 4RN1A 3C0ZA 4BKXB 2VQMA 5EFKB 5D1BA 4BZ6A 3MZ6A 4ZUMA 1ZZ3A 4QA5A 5THTA 3F06A 4A69A 4BZ8A 4QA0A 5DC6A 4CBYA 4ZUPA 3SFHA 3ZNSA 5THVA 5EFJD 4LY1A 4BZ9A 3Q9EA 4CBTA 3Q9FA 1W22A 1ZZ1A 2VQVA 5EFHA 4QA6A 5G10A 2V5WA 5EFGA 5G1BA 1T64A 4BZ5A 5EEMA 5IWGA 3EW8A 5IX0A 5EF7A 1C3SA 3EWFA 4QA7A 5G17A 5D1DA 5EEFA 3MZ7A 2VQJA 4ZURA 4CQFA 5FUEA 3EZTA 4QA2A 2VQOA 5DC5A 1T67A 5G3WA 5THSA 4QA1A 5JI5A 5EFNA 2VQWG 3Q9BA 5EFBD
chains in the Genus database with same CATH superfamily
1RLAA 4MYNA 1PQ3A 4HWWA 5DC8A 3DJ8A 3MAXA 1C3RA 4MYLA 4QA4A 4RHMA 4Q3VA 4RN0A 4BZ7A 4IE3A 1D3VA 4IU5A 5EEIA 1ZZ0A 3MJLA 3C0YA 5THUA 1P8PA 1TBLA 1WVAA 1C3PA 5G0HA 3NIOA 3M1RA 3MFVA 1VKGA 4QA3A 4ZUNA 5A2SA 4I06A 5D1CA 1WOIA 2PHOA 2V5XA 5EENA 1TBJA 4RLAA 5FCWA 4ZUOA 4IXVA 5G0GA 5G13A 3GMZA 4Q3RC 1T69A 5DC7A 1HQFA 3SL1A 1WOHA 5CEVA 5BWZA 5LI3A 3MZ3A 5G11A 4Q3RA 3C10A 4HZEA 1GQ7A 5ICNB 4Q40A 2CEVA 3Q9CA 4GSMA 4RHKA 5EF8A 4RN2A 1TA1A 1P8QA 5G0XA 5G1AA 3SFFA 5HJ9A 3F07A 5G12A 3KV2A 4LXZA 2EF4A 5G0YA 3E9BA 3MZ4A 4G3HA 5G0JA 3F0RA 1XFKA 5EEKA 2GH6A 5G0IA 3MENA 3LHLA 4GWDA 4IXUA 3ZNRA 5G1CA 4Q3PA 3EZPA 1GQ6A 4RHLA 4ZUQA 2VQQA 1HQ5A 3RQDA 3THJA 2VCGA 3MFWA 4RN1A 2PLLA 3NIPA 4GSZA 3C0ZA 4BKXB 2A0MA 2VQMA 5EFKB 5D1BA 5RLAA 4BZ6A 5EFBD 3MZ6A 4MYFA 4ZUMA 2PHAA 1ZZ3A 1HQGA 4QA5A 3TF3A 5THTA 3F06A 4Q3UA 4A69A 4BZ8A 4QA0A 5DC6A 2ZAVA 3F80A 4Q42A 4ZUPA 4CBYA 4HXQA 3SFHA 1HQHA 3NIQA 4CEVA 4IU1A 3ZNSA 3THEA 5THVA 5EFJD 4LY1A 3SKKA 3E6KA 4GSVA 3SL0A 4IU4A 4BZ9A 3Q9EA 4CBTA 1ZPGA 3Q9FA 1W22A 4Q41A 1WOGA 1ZZ1A 2EF5A 3THHA 2VQVA 4IE1A 4MXRA 4Q3QA 3TH7A 5EFHA 1T5GA 4Q3SA 4QA6A 5HJAA 1HQXA 1P8MA 3E8QA 1P8RA 3SJTA 5G10A 1T4TA 2V5WA 5EFGA 5G1BA 1T64A 2RLAA 4FCKA 4BZ5A 5EEMA 5IWGA 4ITYA 4RHIA 1T4PA 3EW8A 5IX0A 5EF7A 4MYKA 1C3SA 1R1OA 3LP7A 3E8ZA 3RLAA 4RHJA 3EWFA 4QA7A 5G17A 3PZLA 3E6VA 3LP4A 1T5FA 4GWCA 5D1DA 1T4SA 1WVBA 2VQJA 3MZ7A 1P8OA 4IE2A 5EEFA 4ZURA 3GN0A 4FCIA 4CQFA 5FUEA 3EZTA 4QA2A 2VQOA 5DC5A 1T67A 5G3WA 4DZ4A 5THSA 3MMRA 4QA1A 5EFNA 5JI5A 2VQWG 1ZPEA 3Q9BA 4Q3TA 2EIVA 3CEVA 1P8SA 4IU0A 1P8NA 1CEVA 2AEBA 4RHQA 1T4RA 1TBHA
chains in the Genus database with same CATH topology
5DC8A 3MAXA 4QA4A 1C3RA 4RN0A 4BZ7A 5EEIA 1ZZ0A 3C0YA 5THUA 1C3PA 5G0HA 1VKGA 4QA3A 4ZUNA 5A2SA 5D1CA 5EENA 2V5XA 5FCWA 4ZUOA 5G0GA 5G13A 1T69A 5DC7A 5BWZA 5LI3A 3MZ3A 5G11A 3C10A 5ICNB 3Q9CA 5G0XA 5EF8A 4RN2A 3SFFA 5G1AA 3F07A 5G12A 4LXZA 5G0YA 3MZ4A 5G0JA 3F0RA 5EEKA 2GH6A 5G0IA 3MENA 3ZNRA 5G1CA 3EZPA 4ZUQA 2VQQA 3RQDA 2VCGA 4RN1A 3C0ZA 4BKXB 2VQMA 5EFKB 5D1BA 4BZ6A 3MZ6A 4ZUMA 1ZZ3A 4QA5A 5THTA 3F06A 4A69A 4BZ8A 4QA0A 5DC6A 4CBYA 4ZUPA 3SFHA 3ZNSA 5THVA 5EFJD 4LY1A 4BZ9A 3Q9EA 4CBTA 3Q9FA 1W22A 1ZZ1A 2VQVA 5EFHA 4QA6A 5G10A 2V5WA 5EFGA 5G1BA 1T64A 4BZ5A 5EEMA 5IWGA 3EW8A 5IX0A 5EF7A 1C3SA 3EWFA 4QA7A 5G17A 5D1DA 5EEFA 3MZ7A 2VQJA 4ZURA 4CQFA 5FUEA 3EZTA 4QA2A 2VQOA 5DC5A 1T67A 5G3WA 5THSA 4QA1A 5JI5A 5EFNA 2VQWG 3Q9BA 5EFBD
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5DC8 A;  3MAX A;  4QA4 A;  1C3R A;  4RN0 A;  4BZ7 A;  5EEI A;  1ZZ0 A;  3C0Y A;  5THU A;  1C3P A;  5G0H A;  1VKG A;  4QA3 A;  4ZUN A;  5A2S A;  5D1C A;  5EEN A;  2V5X A;  5FCW A;  4ZUO A;  5G0G A;  5G13 A;  1T69 A;  5DC7 A;  5BWZ A;  5LI3 A;  3MZ3 A;  5G11 A;  3C10 A;  5ICN B;  3Q9C A;  5G0X A;  5EF8 A;  4RN2 A;  3SFF A;  5G1A A;  3F07 A;  5G12 A;  4LXZ A;  5G0Y A;  3MZ4 A;  5G0J A;  3F0R A;  5EEK A;  2GH6 A;  5G0I A;  3MEN A;  3ZNR A;  5G1C A;  3EZP A;  4ZUQ A;  2VQQ A;  3RQD A;  2VCG A;  4RN1 A;  3C0Z A;  4BKX B;  2VQM A;  5EFK B;  5D1B A;  4BZ6 A;  3MZ6 A;  4ZUM A;  1ZZ3 A;  4QA5 A;  5THT A;  3F06 A;  4A69 A;  4BZ8 A;  4QA0 A;  5DC6 A;  4CBY A;  4ZUP A;  3SFH A;  3ZNS A;  5THV A;  5EFJ D;  4LY1 A;  4BZ9 A;  3Q9E A;  4CBT A;  3Q9F A;  1W22 A;  1ZZ1 A;  2VQV A;  5EFH A;  4QA6 A;  5G10 A;  2V5W A;  5EFG A;  5G1B A;  1T64 A;  4BZ5 A;  5EEM A;  5IWG A;  3EW8 A;  5IX0 A;  5EF7 A;  1C3S A;  3EWF A;  4QA7 A;  5G17 A;  5D1D A;  5EEF A;  3MZ7 A;  2VQJ A;  4ZUR A;  4CQF A;  5FUE A;  3EZT A;  4QA2 A;  2VQO A;  5DC5 A;  1T67 A;  5G3W A;  5THS A;  4QA1 A;  5JI5 A;  5EFN A;  2VQW G;  3Q9B A;  5EFB D; 
#chains in the Genus database with same CATH topology
 1RLA A;  4MYN A;  1PQ3 A;  4HWW A;  5DC8 A;  3DJ8 A;  3MAX A;  1C3R A;  4MYL A;  4QA4 A;  4RHM A;  4Q3V A;  4RN0 A;  4BZ7 A;  4IE3 A;  1D3V A;  4IU5 A;  5EEI A;  1ZZ0 A;  3MJL A;  3C0Y A;  5THU A;  1P8P A;  1TBL A;  1WVA A;  1C3P A;  5G0H A;  3NIO A;  3M1R A;  3MFV A;  1VKG A;  4QA3 A;  4ZUN A;  5A2S A;  4I06 A;  5D1C A;  1WOI A;  2PHO A;  2V5X A;  5EEN A;  1TBJ A;  4RLA A;  5FCW A;  4ZUO A;  4IXV A;  5G0G A;  5G13 A;  3GMZ A;  4Q3R C;  1T69 A;  5DC7 A;  1HQF A;  3SL1 A;  1WOH A;  5CEV A;  5BWZ A;  5LI3 A;  3MZ3 A;  5G11 A;  4Q3R A;  3C10 A;  4HZE A;  1GQ7 A;  5ICN B;  4Q40 A;  2CEV A;  3Q9C A;  4GSM A;  4RHK A;  5EF8 A;  4RN2 A;  1TA1 A;  1P8Q A;  5G0X A;  5G1A A;  3SFF A;  5HJ9 A;  3F07 A;  5G12 A;  3KV2 A;  4LXZ A;  2EF4 A;  5G0Y A;  3E9B A;  3MZ4 A;  4G3H A;  5G0J A;  3F0R A;  1XFK A;  5EEK A;  2GH6 A;  5G0I A;  3MEN A;  3LHL A;  4GWD A;  4IXU A;  3ZNR A;  5G1C A;  4Q3P A;  3EZP A;  1GQ6 A;  4RHL A;  4ZUQ A;  2VQQ A;  1HQ5 A;  3RQD A;  3THJ A;  2VCG A;  3MFW A;  4RN1 A;  2PLL A;  3NIP A;  4GSZ A;  3C0Z A;  4BKX B;  2A0M A;  2VQM A;  5EFK B;  5D1B A;  5RLA A;  4BZ6 A;  5EFB D;  3MZ6 A;  4MYF A;  4ZUM A;  2PHA A;  1ZZ3 A;  1HQG A;  4QA5 A;  3TF3 A;  5THT A;  3F06 A;  4Q3U A;  4A69 A;  4BZ8 A;  4QA0 A;  5DC6 A;  2ZAV A;  3F80 A;  4Q42 A;  4ZUP A;  4CBY A;  4HXQ A;  3SFH A;  1HQH A;  3NIQ A;  4CEV A;  4IU1 A;  3ZNS A;  3THE A;  5THV A;  5EFJ D;  4LY1 A;  3SKK A;  3E6K A;  4GSV A;  3SL0 A;  4IU4 A;  4BZ9 A;  3Q9E A;  4CBT A;  1ZPG A;  3Q9F A;  1W22 A;  4Q41 A;  1WOG A;  1ZZ1 A;  2EF5 A;  3THH A;  2VQV A;  4IE1 A;  4MXR A;  4Q3Q A;  3TH7 A;  5EFH A;  1T5G A;  4Q3S A;  4QA6 A;  5HJA A;  1HQX A;  1P8M A;  3E8Q A;  1P8R A;  3SJT A;  5G10 A;  1T4T A;  2V5W A;  5EFG A;  5G1B A;  1T64 A;  2RLA A;  4FCK A;  4BZ5 A;  5EEM A;  5IWG A;  4ITY A;  4RHI A;  1T4P A;  3EW8 A;  5IX0 A;  5EF7 A;  4MYK A;  1C3S A;  1R1O A;  3LP7 A;  3E8Z A;  3RLA A;  4RHJ A;  3EWF A;  4QA7 A;  5G17 A;  3PZL A;  3E6V A;  3LP4 A;  1T5F A;  4GWC A;  5D1D A;  1T4S A;  1WVB A;  2VQJ A;  3MZ7 A;  1P8O A;  4IE2 A;  5EEF A;  4ZUR A;  3GN0 A;  4FCI A;  4CQF A;  5FUE A;  3EZT A;  4QA2 A;  2VQO A;  5DC5 A;  1T67 A;  5G3W A;  4DZ4 A;  5THS A;  3MMR A;  4QA1 A;  5EFN A;  5JI5 A;  2VQW G;  1ZPE A;  3Q9B A;  4Q3T A;  2EIV A;  3CEV A;  1P8S A;  4IU0 A;  1P8N A;  1CEV A;  2AEB A;  4RHQ A;  1T4R A;  1TBH A; 
#chains in the Genus database with same CATH homology
 5DC8 A;  3MAX A;  4QA4 A;  1C3R A;  4RN0 A;  4BZ7 A;  5EEI A;  1ZZ0 A;  3C0Y A;  5THU A;  1C3P A;  5G0H A;  1VKG A;  4QA3 A;  4ZUN A;  5A2S A;  5D1C A;  5EEN A;  2V5X A;  5FCW A;  4ZUO A;  5G0G A;  5G13 A;  1T69 A;  5DC7 A;  5BWZ A;  5LI3 A;  3MZ3 A;  5G11 A;  3C10 A;  5ICN B;  3Q9C A;  5G0X A;  5EF8 A;  4RN2 A;  3SFF A;  5G1A A;  3F07 A;  5G12 A;  4LXZ A;  5G0Y A;  3MZ4 A;  5G0J A;  3F0R A;  5EEK A;  2GH6 A;  5G0I A;  3MEN A;  3ZNR A;  5G1C A;  3EZP A;  4ZUQ A;  2VQQ A;  3RQD A;  2VCG A;  4RN1 A;  3C0Z A;  4BKX B;  2VQM A;  5EFK B;  5D1B A;  4BZ6 A;  3MZ6 A;  4ZUM A;  1ZZ3 A;  4QA5 A;  5THT A;  3F06 A;  4A69 A;  4BZ8 A;  4QA0 A;  5DC6 A;  4CBY A;  4ZUP A;  3SFH A;  3ZNS A;  5THV A;  5EFJ D;  4LY1 A;  4BZ9 A;  3Q9E A;  4CBT A;  3Q9F A;  1W22 A;  1ZZ1 A;  2VQV A;  5EFH A;  4QA6 A;  5G10 A;  2V5W A;  5EFG A;  5G1B A;  1T64 A;  4BZ5 A;  5EEM A;  5IWG A;  3EW8 A;  5IX0 A;  5EF7 A;  1C3S A;  3EWF A;  4QA7 A;  5G17 A;  5D1D A;  5EEF A;  3MZ7 A;  2VQJ A;  4ZUR A;  4CQF A;  5FUE A;  3EZT A;  4QA2 A;  2VQO A;  5DC5 A;  1T67 A;  5G3W A;  5THS A;  4QA1 A;  5JI5 A;  5EFN A;  2VQW G;  3Q9B A;  5EFB D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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