5EW5E

Crystal structure of colicin e9 in complex with its immunity protein im9
Total Genus 25
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
83
structure length
83
Chain Sequence
LKHSISDYTEAEFLQLVTTICNADTSSEEELVKLVTHFEEMTEHPSGSDLIYYPKEGDDDSPSGIVNTVKQWRAANGKSGFKQ
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Hydrolase
molecule keywords Colicin-E9
publication title Structural and biophysical analysis of nuclease protein antibiotics.
pubmed doi rcsb
source organism Escherichia coli
total genus 25
structure length 83
sequence length 83
chains with identical sequence F, G, H
ec nomenclature
pdb deposition date 2015-11-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
E PF01320 Colicin_Pyocin Colicin immunity protein / pyocin immunity protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.20 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Colicin E immunity protein 5ew5E00
1IMPA 1BXIA 4UHPB 3U43A 3GKLC 1FR2A 2VLOA 2K5XA 1E0HA 4QKOA 2ERHA 1UNKA 2VLNA 2GZIA 1MZ8A 7CEIA 1AYIA 2GYKA 2VLQA 2JB0A 2VLPA 2K0DX 3GJNA 2GZJA 1GXHA 1EMVA 2GZFA 2GZGA 1IMQA 2GZEA 1GXGA 1UJZA 1CEIA 4F37A 2JBGA 1ZNVA 2WPTA 5EW5E 2NO8A 2JAZA
chains in the Genus database with same CATH superfamily
1Q86Q 2JQ4A 3G21A 2CQ8A 4XFYA 2N6ZA 2EFJA 2XZ0D 4QKOA 1UNKA 4U0EA 1L0IA 1RO0A 3NTEA 1VQKP 1VQLP 2KGCA 2MR8A 2PEKA 2PEIA 3CCMP 5HGOA 4F37A 3CCJP 5DCKA 2XV6A 1VQ4P 3B4QA 1QVGO 3U43A 2QA4P 2FVFA 1E0HA 3GZLA 5HGNA 2KG8A 2VLNA 5F2NA 1N8RQ 7CEIA 1IUQA 2JB0A 2VLPA 1S72P 1OR5A 1VQ9P 3G4SP 2FQ1A 3G0VA 3GZMA 4M0IA 3CMEP 2XT1A 3G71P 3CC4P 3G1IA 3RG2A 4H2XC 4DG9A 2K0DX 2LMLA 2M8LA 2K2QA 4U0CA 2LOLA 2M8NA 5F2KA 2KGAA 4NEOA 2VLQA 4BPGA 2M8PA 1QVFO 4XRQA 3EJBA 1RNIA 5KP7B 1YI2P 1Z6MA 1BAJA 3CD6P 3WBHA 4COCA 1K30A 1Q82Q 2KOQA 4U0AA 2XZ1C 3CE7A 2MD9A 3G6EP 2JU1A 2OTLP 2P9XA 2FAEA 1GXHA 5F2OA 2PY8A 3CCLP 2JGPA 1K9MQ 1DV5A 2LTEA 2LIUA 3B5IA 5JPAA 1MZ8A 5HVCA 2PENA 2EG5A 2GZJA 2BUOA 2FVAA 2MVVA 3E2DA 1UJZA 3EJEA 1VKUA 2JO0A 2L4BA 2KR5A 2OARA 3H4EA 1Q7YQ 2KOSA 2K5XA 1JJ2O 2K0XA 2MY5A 3DS5A 2GZIA 2JYGA 1AYIA 2K92A 2XXMA 4PWVB 4U0DA 2PEJA 4XFZA 3GJNA 2DNWA 2GZFA 5HGMA 2Z46A 2PEQA 4U0FA 2KORA 2Z45A 2NO8A 2BHVA 1BXIA 3VRLC 5BS1A 2AFEA 2K93A 4IZ6A 1L0HA 3G29A 3MGEA 4IPYA 3EJDA 1K8AQ 1VHNA 3CXCO 1HY8A 2LPKA 1VQPP 1VQ5P 1CEIA 1ZNVA 2MF4A 2JYLA 5EJDA 1VQNP 3P05A 3OW2O 1F80D 1DNYA 4UHPB 4MRTC 3CPWO 1EOQA 3G28A 1ZMBA 2K94A 2FVEA 2Z44A 1AUMA 2KW2A 2GZEA 2FHSC 5BS2A 2E1MA 4BPHA 3DPHA 2ROQA 2K0YA 2FQ2A 3DS3A 2JU2A 2JAZA 3H47A 2GDXA 1NJIQ 4COPA 3GKLC 3CCUP 5I4TG 3CCRP 1YJWP 4CA3A 2LIWA 3M1MA 2LF4A 1VQ6P 2CG5B 1NQ4A 2QNWA 4BPFA 1VQ7P 2KWLA 1VQ8P 3HYBA 2KG6A 4XFXA 4GR2A 2FADA 1M6EX 2KGEA 3LMOA 2QEXP 1Q81Q 5KP8B 5CZDB 2FQ0A 3CCEP 2L9FA 1X3OA 1W2BO 3Q20A 2EIAA 4R0MA 2AF8A 3CCSP 1K73Q 1M1KQ 2CWOA 4H2YC 2N50A 1QRJA 2N98A 1FR2A 3DS2A 1VQMP 1YHQP 3I56P 1YIJP 2GDWA 5HGLA 3LRYA 2VSQA 2GDYA 1KQSO 3I55P 2N6YA 1T8KA 3DS4A 4H2WC 2OTJP 4HKGA 2MR7A 1VQOP 1EIAA 2CGQA 2L0QA 1RO2A 2KOOA 2GZGA 1A8OA 1IMQA 1E6JP 1ACPA 2X2BA 1M90Q 2JBGA 5HV8A 2EHSA 2LL8A 4PH1A 1GPJA 2FACA 4QNBA 3NY7B 1M74A 3DS0A 2N5IA 2KGDA 1YJ9P 3DS1A 2N5HA 2PEMA 2WPTA 2DGYA 4PH0A 3DTJA 1IMPA 2KOPA 3G1GA 2CNRA 4GR6A 1YITP 2ERHA 3CMAP 2PNGA 2M5RA 3CCVP 1M6NA 3CC7P 4U0BA 2EHTA 5KP6B 1D1DA 2LKIA 2AVAA 2ONTA 1KLPA 1HQBA 5EW5E 2AFDA 2L22A 4WYMA 2MVUA 3HZQA 4XROA 2KG9A 3H0DA 2VLOA 3G26A 2GYKA 1KD1Q 1KC8Q 1EMVA 4PXHB 1GXGA 2KODA 3CCQP 2PEOA 2L6EA 1A43A 3CC2P 1YJNP 3RG6C 1AF8A
chains in the Genus database with same CATH topology
1IMPA 1BXIA 4UHPB 3U43A 3GKLC 1FR2A 2VLOA 2K5XA 1E0HA 4QKOA 2ERHA 1UNKA 2VLNA 2GZIA 1MZ8A 7CEIA 1AYIA 2GYKA 2VLQA 2JB0A 2VLPA 2K0DX 3GJNA 2GZJA 1GXHA 1EMVA 2GZFA 2GZGA 1IMQA 2GZEA 1GXGA 1UJZA 1CEIA 4F37A 2JBGA 1ZNVA 2WPTA 5EW5E 2NO8A 2JAZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1IMP A;  1BXI A;  4UHP B;  3U43 A;  3GKL C;  1FR2 A;  2VLO A;  2K5X A;  1E0H A;  4QKO A;  2ERH A;  1UNK A;  2VLN A;  2GZI A;  1MZ8 A;  7CEI A;  1AYI A;  2GYK A;  2VLQ A;  2JB0 A;  2VLP A;  2K0D X;  3GJN A;  2GZJ A;  1GXH A;  1EMV A;  2GZF A;  2GZG A;  1IMQ A;  2GZE A;  1GXG A;  1UJZ A;  1CEI A;  4F37 A;  2JBG A;  1ZNV A;  2WPT A;  5EW5 E;  2NO8 A;  2JAZ A; 
#chains in the Genus database with same CATH topology
 1Q86 Q;  2JQ4 A;  3G21 A;  2CQ8 A;  4XFY A;  2N6Z A;  2EFJ A;  2XZ0 D;  4QKO A;  1UNK A;  4U0E A;  1L0I A;  1RO0 A;  3NTE A;  1VQK P;  1VQL P;  2KGC A;  2MR8 A;  2PEK A;  2PEI A;  3CCM P;  5HGO A;  4F37 A;  3CCJ P;  5DCK A;  2XV6 A;  1VQ4 P;  3B4Q A;  1QVG O;  3U43 A;  2QA4 P;  2FVF A;  1E0H A;  3GZL A;  5HGN A;  2KG8 A;  2VLN A;  5F2N A;  1N8R Q;  7CEI A;  1IUQ A;  2JB0 A;  2VLP A;  1S72 P;  1OR5 A;  1VQ9 P;  3G4S P;  2FQ1 A;  3G0V A;  3GZM A;  4M0I A;  3CME P;  2XT1 A;  3G71 P;  3CC4 P;  3G1I A;  3RG2 A;  4H2X C;  4DG9 A;  2K0D X;  2LML A;  2M8L A;  2K2Q A;  4U0C A;  2LOL A;  2M8N A;  5F2K A;  2KGA A;  4NEO A;  2VLQ A;  4BPG A;  2M8P A;  1QVF O;  4XRQ A;  3EJB A;  1RNI A;  5KP7 B;  1YI2 P;  1Z6M A;  1BAJ A;  3CD6 P;  3WBH A;  4COC A;  1K30 A;  1Q82 Q;  2KOQ A;  4U0A A;  2XZ1 C;  3CE7 A;  2MD9 A;  3G6E P;  2JU1 A;  2OTL P;  2P9X A;  2FAE A;  1GXH A;  5F2O A;  2PY8 A;  3CCL P;  2JGP A;  1K9M Q;  1DV5 A;  2LTE A;  2LIU A;  3B5I A;  5JPA A;  1MZ8 A;  5HVC A;  2PEN A;  2EG5 A;  2GZJ A;  2BUO A;  2FVA A;  2MVV A;  3E2D A;  1UJZ A;  3EJE A;  1VKU A;  2JO0 A;  2L4B A;  2KR5 A;  2OAR A;  3H4E A;  1Q7Y Q;  2KOS A;  2K5X A;  1JJ2 O;  2K0X A;  2MY5 A;  3DS5 A;  2GZI A;  2JYG A;  1AYI A;  2K92 A;  2XXM A;  4PWV B;  4U0D A;  2PEJ A;  4XFZ A;  3GJN A;  2DNW A;  2GZF A;  5HGM A;  2Z46 A;  2PEQ A;  4U0F A;  2KOR A;  2Z45 A;  2NO8 A;  2BHV A;  1BXI A;  3VRL C;  5BS1 A;  2AFE A;  2K93 A;  4IZ6 A;  1L0H A;  3G29 A;  3MGE A;  4IPY A;  3EJD A;  1K8A Q;  1VHN A;  3CXC O;  1HY8 A;  2LPK A;  1VQP P;  1VQ5 P;  1CEI A;  1ZNV A;  2MF4 A;  2JYL A;  5EJD A;  1VQN P;  3P05 A;  3OW2 O;  1F80 D;  1DNY A;  4UHP B;  4MRT C;  3CPW O;  1EOQ A;  3G28 A;  1ZMB A;  2K94 A;  2FVE A;  2Z44 A;  1AUM A;  2KW2 A;  2GZE A;  2FHS C;  5BS2 A;  2E1M A;  4BPH A;  3DPH A;  2ROQ A;  2K0Y A;  2FQ2 A;  3DS3 A;  2JU2 A;  2JAZ A;  3H47 A;  2GDX A;  1NJI Q;  4COP A;  3GKL C;  3CCU P;  5I4T G;  3CCR P;  1YJW P;  4CA3 A;  2LIW A;  3M1M A;  2LF4 A;  1VQ6 P;  2CG5 B;  1NQ4 A;  2QNW A;  4BPF A;  1VQ7 P;  2KWL A;  1VQ8 P;  3HYB A;  2KG6 A;  4XFX A;  4GR2 A;  2FAD A;  1M6E X;  2KGE A;  3LMO A;  2QEX P;  1Q81 Q;  5KP8 B;  5CZD B;  2FQ0 A;  3CCE P;  2L9F A;  1X3O A;  1W2B O;  3Q20 A;  2EIA A;  4R0M A;  2AF8 A;  3CCS P;  1K73 Q;  1M1K Q;  2CWO A;  4H2Y C;  2N50 A;  1QRJ A;  2N98 A;  1FR2 A;  3DS2 A;  1VQM P;  1YHQ P;  3I56 P;  1YIJ P;  2GDW A;  5HGL A;  3LRY A;  2VSQ A;  2GDY A;  1KQS O;  3I55 P;  2N6Y A;  1T8K A;  3DS4 A;  4H2W C;  2OTJ P;  4HKG A;  2MR7 A;  1VQO P;  1EIA A;  2CGQ A;  2L0Q A;  1RO2 A;  2KOO A;  2GZG A;  1A8O A;  1IMQ A;  1E6J P;  1ACP A;  2X2B A;  1M90 Q;  2JBG A;  5HV8 A;  2EHS A;  2LL8 A;  4PH1 A;  1GPJ A;  2FAC A;  4QNB A;  3NY7 B;  1M74 A;  3DS0 A;  2N5I A;  2KGD A;  1YJ9 P;  3DS1 A;  2N5H A;  2PEM A;  2WPT A;  2DGY A;  4PH0 A;  3DTJ A;  1IMP A;  2KOP A;  3G1G A;  2CNR A;  4GR6 A;  1YIT P;  2ERH A;  3CMA P;  2PNG A;  2M5R A;  3CCV P;  1M6N A;  3CC7 P;  4U0B A;  2EHT A;  5KP6 B;  1D1D A;  2LKI A;  2AVA A;  2ONT A;  1KLP A;  1HQB A;  5EW5 E;  2AFD A;  2L22 A;  4WYM A;  2MVU A;  3HZQ A;  4XRO A;  2KG9 A;  3H0D A;  2VLO A;  3G26 A;  2GYK A;  1KD1 Q;  1KC8 Q;  1EMV A;  4PXH B;  1GXG A;  2KOD A;  3CCQ P;  2PEO A;  2L6E A;  1A43 A;  3CC2 P;  1YJN P;  3RG6 C;  1AF8 A; 
#chains in the Genus database with same CATH homology
 1IMP A;  1BXI A;  4UHP B;  3U43 A;  3GKL C;  1FR2 A;  2VLO A;  2K5X A;  1E0H A;  4QKO A;  2ERH A;  1UNK A;  2VLN A;  2GZI A;  1MZ8 A;  7CEI A;  1AYI A;  2GYK A;  2VLQ A;  2JB0 A;  2VLP A;  2K0D X;  3GJN A;  2GZJ A;  1GXH A;  1EMV A;  2GZF A;  2GZG A;  1IMQ A;  2GZE A;  1GXG A;  1UJZ A;  1CEI A;  4F37 A;  2JBG A;  1ZNV A;  2WPT A;  5EW5 E;  2NO8 A;  2JAZ A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...