5FAIA

Emg1 n1-specific pseudouridine methyltransferase
Total Genus 57
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
57
Knots found
sequence length
209
structure length
209
Chain Sequence
NKIGGRRLIVVLEGASLETVKVGKTYELLNCDKHKSILLKNGRDPGEARPDITHQSLLMLMDSPLNRAGLLQVYIHTQKNVLIEVNPQTRIPRTFDRFCGLMVQLLHKLSVRAADGPQKLLKVIKNPVSDHFPVGCMKVGTSFSIPVVSDVRELVPSSDPIVFVVGAFAHGKVSVEYTEKMVSISNYPLSAALTCAKLTTAFEEVWGVI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords Ribosomal RNA small subunit methyltransferase NEP1
publication title EMG1 N1-Specific Pseudouridine Methyltransferase
rcsb
source organism Homo sapiens
total genus 57
structure length 209
sequence length 209
other databases KnotProt 2.0: K +31
ec nomenclature ec 2.1.1.-:
pdb deposition date 2015-12-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03587 EMG1 EMG1/NEP1 methyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 5faiA01
1NS5A 3OINA 1IPAA 4YPYA 5GM8A 4YQLA 4X3MA 4MCCA 4IG6A 3DCMX 1P9PA 2YY8A 3L8UA 4J3CA 3ONPA 4YVHA 5D9FA 3QUVA 4JALA 4CNFA 3IC6A 1O6DA 1MXIA 3OIIA 3KW2A 4X3LA 3AXZA 4YVGA 3GYQA 4CNEA 1VH0A 4YPXA 4YVKA 5CO4A 4CNDA 4YQIA 2CX8A 3E5YA 2EGWA 2Z0YA 4YPZA 4YQTA 4L69A 3O7BA 4YQKA 3NK7A 3N4KA 5FAIA 3OIJA 4YQ6A 4YQ5A 1V6ZA 4E8BA 4JAKA 4CNGA 1UAJA 4YQDA 4YQNA 4YPWA 2QWVA 4YVIA 4YQBA 5GMBA 3BBDA 4RG1A 4XBOA 4KDZA 4YQGA 1X7PA 1UAMA 4YQ8A 2EGVA 3NK6A 4YQ1A 2QMMA 4YQ9A 4YQ0A 4YQQA 1VHKA 4YQ2A 4YQCA 4YQSA 4YQOA 3BBHA 2O3AA 4H3ZA 1V2XA 1J85A 3ILKA 1Z85A 3IEFA 4MCDA 1NXZA 3KY7A 4YQAA 4FAKA 2I6DA 3BBEA 1OY5A 1VHYA 4MCBA 4YQ3A 2V3KA 3KNUA 4YQPA 1K3RA 1ZJRA 2HA8A 4YQJA 3N4JA 3AIAA 3KTYA 3AI9X 1X7OA 1UALA 2V3JA 1TO0A 4YQ4A 4YQRA 4KGNA 1UAKA 4PZKA 1GZ0A 5GMCA 4YVJA 4YQ7A 4H3YA
chains in the Genus database with same CATH superfamily
1NS5A 3OINA 1IPAA 4YPYA 5GM8A 4YQLA 4X3MA 4MCCA 4JWHA 4IG6A 3DCMX 1P9PA 2YY8A 3L8UA 4J3CA 3ONPA 4YVHA 5D9FA 3QUVA 4JALA 4CNFA 3IC6A 1O6DA 1MXIA 3OIIA 3KW2A 4X3LA 3AXZA 4YVGA 3GYQA 4CNEA 1VH0A 4YPXA 4YVKA 5CO4A 4CNDA 4YQIA 2CX8A 3E5YA 2EGWA 2Z0YA 4YPZA 4YQTA 4L69A 3O7BA 4YQKA 3NK7A 3N4KA 5FAIA 3OIJA 4JWGA 4YQ6A 4YQ5A 1V6ZA 4E8BA 4JAKA 4CNGA 1UAJA 4YQDA 4YQNA 4YPWA 2QWVA 4YVIA 4YQBA 5GMBA 3BBDA 4RG1A 4XBOA 4KDZA 4YQGA 1X7PA 1UAMA 4YQ8A 2EGVA 3NK6A 4YQ1A 2QMMA 4YQ9A 4YQ0A 4YQQA 1VHKA 4YQ2A 4YQCA 4YQSA 4YQOA 3BBHA 2O3AA 4JWFA 4H3ZA 1V2XA 1J85A 3ILKA 1Z85A 3IEFA 4MCDA 1NXZA 3KY7A 4YQAA 4FAKA 2I6DA 4FMWA 3BBEA 4JWJA 1OY5A 1VHYA 4MCBA 4YQ3A 2V3KA 3KNUA 4YQPA 1K3RA 1ZJRA 2HA8A 4YQJA 3N4JA 3AIAA 3KTYA 3AI9X 1X7OA 1UALA 2V3JA 1TO0A 4YQ4A 4YQRA 4KGNA 1UAKA 4PZKA 1GZ0A 5GMCA 4YVJA 4YQ7A 4H3YA
chains in the Genus database with same CATH topology
1NS5A 3OINA 1IPAA 4YPYA 5GM8A 4YQLA 4X3MA 4MCCA 4JWHA 4IG6A 3DCMX 1P9PA 2YY8A 3L8UA 4J3CA 3ONPA 4YVHA 5D9FA 3QUVA 4JALA 4CNFA 3IC6A 1O6DA 1MXIA 3OIIA 3KW2A 4X3LA 3AXZA 4YVGA 3GYQA 4CNEA 1VH0A 4YPXA 4YVKA 5CO4A 4CNDA 4YQIA 2CX8A 3E5YA 2EGWA 2Z0YA 4YPZA 4YQTA 4L69A 3O7BA 4YQKA 3NK7A 3N4KA 5FAIA 3OIJA 4JWGA 4YQ6A 4YQ5A 1V6ZA 4E8BA 4JAKA 4CNGA 1UAJA 4YQDA 4YQNA 4YPWA 2QWVA 4YVIA 4YQBA 5GMBA 3BBDA 4RG1A 4XBOA 4KDZA 4YQGA 1X7PA 1UAMA 4YQ8A 2EGVA 3NK6A 4YQ1A 2QMMA 4YQ9A 4YQ0A 4YQQA 1VHKA 4YQ2A 4YQCA 4YQSA 4YQOA 3BBHA 2O3AA 4JWFA 4H3ZA 1V2XA 1J85A 3ILKA 1Z85A 3IEFA 4MCDA 1NXZA 3KY7A 4YQAA 4FAKA 2I6DA 4FMWA 3BBEA 4JWJA 1OY5A 1VHYA 4MCBA 4YQ3A 2V3KA 3KNUA 4YQPA 1K3RA 1ZJRA 2HA8A 4YQJA 3N4JA 3AIAA 3KTYA 3AI9X 1X7OA 1UALA 2V3JA 1TO0A 4YQ4A 4YQRA 4KGNA 1UAKA 4PZKA 1GZ0A 5GMCA 4YVJA 4YQ7A 4H3YA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1NS5 A;  3OIN A;  1IPA A;  4YPY A;  5GM8 A;  4YQL A;  4X3M A;  4MCC A;  4IG6 A;  3DCM X;  1P9P A;  2YY8 A;  3L8U A;  4J3C A;  3ONP A;  4YVH A;  5D9F A;  3QUV A;  4JAL A;  4CNF A;  3IC6 A;  1O6D A;  1MXI A;  3OII A;  3KW2 A;  4X3L A;  3AXZ A;  4YVG A;  3GYQ A;  4CNE A;  1VH0 A;  4YPX A;  4YVK A;  5CO4 A;  4CND A;  4YQI A;  2CX8 A;  3E5Y A;  2EGW A;  2Z0Y A;  4YPZ A;  4YQT A;  4L69 A;  3O7B A;  4YQK A;  3NK7 A;  3N4K A;  5FAI A;  3OIJ A;  4YQ6 A;  4YQ5 A;  1V6Z A;  4E8B A;  4JAK A;  4CNG A;  1UAJ A;  4YQD A;  4YQN A;  4YPW A;  2QWV A;  4YVI A;  4YQB A;  5GMB A;  3BBD A;  4RG1 A;  4XBO A;  4KDZ A;  4YQG A;  1X7P A;  1UAM A;  4YQ8 A;  2EGV A;  3NK6 A;  4YQ1 A;  2QMM A;  4YQ9 A;  4YQ0 A;  4YQQ A;  1VHK A;  4YQ2 A;  4YQC A;  4YQS A;  4YQO A;  3BBH A;  2O3A A;  4H3Z A;  1V2X A;  1J85 A;  3ILK A;  1Z85 A;  3IEF A;  4MCD A;  1NXZ A;  3KY7 A;  4YQA A;  4FAK A;  2I6D A;  3BBE A;  1OY5 A;  1VHY A;  4MCB A;  4YQ3 A;  2V3K A;  3KNU A;  4YQP A;  1K3R A;  1ZJR A;  2HA8 A;  4YQJ A;  3N4J A;  3AIA A;  3KTY A;  3AI9 X;  1X7O A;  1UAL A;  2V3J A;  1TO0 A;  4YQ4 A;  4YQR A;  4KGN A;  1UAK A;  4PZK A;  1GZ0 A;  5GMC A;  4YVJ A;  4YQ7 A;  4H3Y A; 
#chains in the Genus database with same CATH topology
 1NS5 A;  3OIN A;  1IPA A;  4YPY A;  5GM8 A;  4YQL A;  4X3M A;  4MCC A;  4JWH A;  4IG6 A;  3DCM X;  1P9P A;  2YY8 A;  3L8U A;  4J3C A;  3ONP A;  4YVH A;  5D9F A;  3QUV A;  4JAL A;  4CNF A;  3IC6 A;  1O6D A;  1MXI A;  3OII A;  3KW2 A;  4X3L A;  3AXZ A;  4YVG A;  3GYQ A;  4CNE A;  1VH0 A;  4YPX A;  4YVK A;  5CO4 A;  4CND A;  4YQI A;  2CX8 A;  3E5Y A;  2EGW A;  2Z0Y A;  4YPZ A;  4YQT A;  4L69 A;  3O7B A;  4YQK A;  3NK7 A;  3N4K A;  5FAI A;  3OIJ A;  4JWG A;  4YQ6 A;  4YQ5 A;  1V6Z A;  4E8B A;  4JAK A;  4CNG A;  1UAJ A;  4YQD A;  4YQN A;  4YPW A;  2QWV A;  4YVI A;  4YQB A;  5GMB A;  3BBD A;  4RG1 A;  4XBO A;  4KDZ A;  4YQG A;  1X7P A;  1UAM A;  4YQ8 A;  2EGV A;  3NK6 A;  4YQ1 A;  2QMM A;  4YQ9 A;  4YQ0 A;  4YQQ A;  1VHK A;  4YQ2 A;  4YQC A;  4YQS A;  4YQO A;  3BBH A;  2O3A A;  4JWF A;  4H3Z A;  1V2X A;  1J85 A;  3ILK A;  1Z85 A;  3IEF A;  4MCD A;  1NXZ A;  3KY7 A;  4YQA A;  4FAK A;  2I6D A;  4FMW A;  3BBE A;  4JWJ A;  1OY5 A;  1VHY A;  4MCB A;  4YQ3 A;  2V3K A;  3KNU A;  4YQP A;  1K3R A;  1ZJR A;  2HA8 A;  4YQJ A;  3N4J A;  3AIA A;  3KTY A;  3AI9 X;  1X7O A;  1UAL A;  2V3J A;  1TO0 A;  4YQ4 A;  4YQR A;  4KGN A;  1UAK A;  4PZK A;  1GZ0 A;  5GMC A;  4YVJ A;  4YQ7 A;  4H3Y A; 
#chains in the Genus database with same CATH homology
 1NS5 A;  3OIN A;  1IPA A;  4YPY A;  5GM8 A;  4YQL A;  4X3M A;  4MCC A;  4JWH A;  4IG6 A;  3DCM X;  1P9P A;  2YY8 A;  3L8U A;  4J3C A;  3ONP A;  4YVH A;  5D9F A;  3QUV A;  4JAL A;  4CNF A;  3IC6 A;  1O6D A;  1MXI A;  3OII A;  3KW2 A;  4X3L A;  3AXZ A;  4YVG A;  3GYQ A;  4CNE A;  1VH0 A;  4YPX A;  4YVK A;  5CO4 A;  4CND A;  4YQI A;  2CX8 A;  3E5Y A;  2EGW A;  2Z0Y A;  4YPZ A;  4YQT A;  4L69 A;  3O7B A;  4YQK A;  3NK7 A;  3N4K A;  5FAI A;  3OIJ A;  4JWG A;  4YQ6 A;  4YQ5 A;  1V6Z A;  4E8B A;  4JAK A;  4CNG A;  1UAJ A;  4YQD A;  4YQN A;  4YPW A;  2QWV A;  4YVI A;  4YQB A;  5GMB A;  3BBD A;  4RG1 A;  4XBO A;  4KDZ A;  4YQG A;  1X7P A;  1UAM A;  4YQ8 A;  2EGV A;  3NK6 A;  4YQ1 A;  2QMM A;  4YQ9 A;  4YQ0 A;  4YQQ A;  1VHK A;  4YQ2 A;  4YQC A;  4YQS A;  4YQO A;  3BBH A;  2O3A A;  4JWF A;  4H3Z A;  1V2X A;  1J85 A;  3ILK A;  1Z85 A;  3IEF A;  4MCD A;  1NXZ A;  3KY7 A;  4YQA A;  4FAK A;  2I6D A;  4FMW A;  3BBE A;  4JWJ A;  1OY5 A;  1VHY A;  4MCB A;  4YQ3 A;  2V3K A;  3KNU A;  4YQP A;  1K3R A;  1ZJR A;  2HA8 A;  4YQJ A;  3N4J A;  3AIA A;  3KTY A;  3AI9 X;  1X7O A;  1UAL A;  2V3J A;  1TO0 A;  4YQ4 A;  4YQR A;  4KGN A;  1UAK A;  4PZK A;  1GZ0 A;  5GMC A;  4YVJ A;  4YQ7 A;  4H3Y A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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