5G0IA

Crystal structure of danio rerio hdac6 cd1 and cd2 (linker cleaved) in complex with nexturastat a
Total Genus 294
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
294
sequence length
744
structure length
722
Chain Sequence
SKATGTGLVYVDAFTRFHCLWDASHPECPARVSTVMEMLETEGLLGRCVQVEARAVTEDELLLVHTKEYVELMKSTQNMTEEELKTLAEKYDSVYLHPGFFSSACLSVGSVLQLVDKVMTSQLRNGFSINRPPGHHAQADKMNGFCMFNNLAIAARYAQKRHRVQRVLIVDWDVHHGQGIQYIFEEDPSVLYFSVHRYEDGSFWPHLKESDSSSVGSGAGQGYNINLPWNKVGMESGDYITAFQQLLLPVAYEFQPQLVLVAAGFDAVIGDPKGGMQVSPECFSILTHMLKGVAQGRLVLALEGGYNLQSTAEGVCASMRSLLGDPCPHLPSSGAPCESALKSISKTISDLYPFWKSLQTFEPITGLVYDQRMMLHHNMWDSHHPELPQRISRIFSRHEELRLLSRCHRIPARLATEEELALCHSSKHISIIKSSEHMKPRDLNRLGDEYNSIFISNESYTCALLAAGSCFNSAQAILTGQVRNAVAIVRPPGHHAEKDTACGFCFFNTAALTARYAQSITRESLRVLIVDWDVHHGNGTQHIFEEDDSVLYISLHRYEDGAFFPNSEDANYDKVGLGKGRGYNVNIPWNGGKMGDPEYMAAFHHLVMPIAREFAPELVLVSAGFDAARGDPLGGFQVTPEGYAHLTHQLMSLAAGRVLIILEGGYNLTSISESMSMCTSMLLGDSPPSLDHLTPLKTSATVSINNVLRAHAPFWSSLRVNI
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Cell cycle
molecule keywords HDAC6
publication title Structural Insights Into Hdac6 Tubulin Deacetylation and its Selective Inhibition
pubmed doi rcsb
source organism Danio rerio
total genus 294
structure length 722
sequence length 744
chains with identical sequence B
ec nomenclature
pdb deposition date 2016-03-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00850 Hist_deacetyl Histone deacetylase domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.800.20 Alpha Beta 3-Layer(aba) Sandwich Arginase; Chain A Histone deacetylase domain 5g0iA02
3.40.800.20 Alpha Beta 3-Layer(aba) Sandwich Arginase; Chain A Histone deacetylase domain 5g0iA01
3EZPA 5FUEA 4CBTA 1T69A 5EFJD 3C0YA 5IWGA 5G17A 5JI5A 2VQWG 3RQDA 5BWZA 3EWFA 4ZUNA 4BZ9A 2VQVA 1C3RA 4RN1A 4A69A 2V5XA 4RN0A 5EFNA 5IX0A 4CQFA 5EEFA 4BZ5A 3ZNRA 4CBYA 4QA5A 5EF8A 4LY1A 4LXZA 3Q9FA 2VQMA 1ZZ0A 4RN2A 3MZ4A 1VKGA 5EEMA 5THSA 1T67A 3EZTA 5G0GA 3MENA 4QA6A 5G0IA 5G3WA 5D1BA 1C3SA 5FCWA 3F0RA 4BZ8A 5EEIA 5ICNB 3MZ3A 4QA0A 5EFHA 4QA1A 4ZURA 1T64A 1ZZ3A 5G0HA 4QA2A 5THUA 2VQQA 3F07A 5G0YA 5DC5A 3SFHA 5D1DA 4BZ6A 3MZ6A 4BZ7A 5DC7A 5THVA 5A2SA 4ZUOA 5EFGA 5G13A 3C10A 5G12A 5G11A 4ZUMA 5EF7A 5EFKB 5THTA 2V5WA 5DC6A 2VQJA 4QA4A 2VQOA 1C3PA 3Q9BA 5G0XA 2VCGA 3F06A 5G0JA 2GH6A 4ZUQA 3Q9EA 5G1AA 1W22A 3C0ZA 5D1CA 5EENA 3MZ7A 1ZZ1A 5EEKA 5LI3A 3MAXA 5DC8A 3SFFA 4BKXB 5EFBD 4QA7A 3EW8A 5G1CA 5G10A 3Q9CA 3ZNSA 5G1BA 4QA3A 4ZUPA
chains in the Genus database with same CATH superfamily
3EZPA 5FUEA 4CBTA 1T69A 3SJTA 5EFJD 3C0YA 5IWGA 5G17A 1TBHA 5JI5A 2VQWG 4IE3A 4FCIA 3RQDA 4CEVA 3EWFA 4ZUNA 4BZ9A 5BWZA 3SKKA 2VQVA 4RLAA 1P8MA 3CEVA 3MFVA 1C3RA 4RN1A 4RHJA 2PLLA 2V5XA 4RN0A 5EFNA 4A69A 4IXUA 5IX0A 4CQFA 5EEFA 4BZ5A 4MYFA 1TA1A 3E6VA 3ZNRA 4CBYA 1D3VA 2EIVA 4QA5A 5EF8A 1WOHA 4LY1A 4LXZA 3Q9FA 2VQMA 5HJAA 1ZZ0A 1HQ5A 4RN2A 3MZ4A 1VKGA 4Q3SA 5EEMA 4HZEA 4IU1A 5THSA 2CEVA 3THJA 3TH7A 2PHOA 1P8PA 4GWDA 1T67A 3EZTA 4MYLA 1TBLA 4MXRA 5G0GA 3MENA 4QA6A 1P8RA 5G0IA 4Q3RA 2A0MA 1PQ3A 4RHKA 5G3WA 1HQGA 4Q3VA 4G3HA 5HJ9A 5RLAA 1WOIA 4GWCA 4GSMA 5D1BA 4Q41A 1C3SA 1T4TA 3MJLA 5FCWA 1WOGA 3F0RA 2PHAA 4DZ4A 3NIQA 4BZ8A 5EEIA 1T4PA 4RHMA 1ZPEA 1HQHA 5ICNB 4IU4A 4RHIA 1ZPGA 3MZ3A 4QA0A 5EFHA 4QA1A 4MYKA 3LHLA 3THHA 2EF5A 4ZURA 1T64A 4IE2A 1ZZ3A 5G0HA 4QA2A 1XFKA 1RLAA 3SL0A 5THUA 3E8ZA 2VQQA 3F07A 5G0YA 5DC5A 4FCKA 3GMZA 3SFHA 5D1DA 3TF3A 5CEVA 4BZ6A 3MZ6A 4IU0A 4BZ7A 5DC7A 5THVA 1WVAA 5A2SA 2EF4A 4IXVA 3F80A 3MFWA 3SL1A 1P8OA 4Q3QA 4Q3TA 5EFGA 4ZUOA 3M1RA 5G13A 3C10A 5G12A 5G11A 1P8NA 4ZUMA 5EF7A 1T5GA 5EFKB 1WVBA 5THTA 1R1OA 2V5WA 1CEVA 2VQJA 5DC6A 4QA4A 2VQOA 4Q3RC 1C3PA 3Q9BA 1P8QA 3LP7A 3E6KA 2VCGA 5G0XA 2ZAVA 3F06A 5G0JA 2GH6A 3NIPA 4ZUQA 3Q9EA 4Q3UA 4GSVA 5G1AA 1W22A 4Q3PA 1T5FA 3GN0A 3LP4A 3C0ZA 5D1CA 5EENA 3MZ7A 2AEBA 4I06A 1T4RA 1HQXA 1ZZ1A 4RHQA 5EEKA 1GQ6A 4IE1A 5LI3A 1HQFA 2RLAA 3MAXA 5DC8A 3MMRA 3SFFA 4BKXB 1GQ7A 5EFBD 1P8SA 3KV2A 1TBJA 4Q40A 4QA7A 3RLAA 3E9BA 3NIOA 4HWWA 4ITYA 3PZLA 3THEA 3EW8A 4HXQA 4GSZA 5G1CA 3Q9CA 5G10A 3ZNSA 3E8QA 5G1BA 3DJ8A 4Q42A 4QA3A 1T4SA 4ZUPA 4RHLA 4IU5A 4MYNA
chains in the Genus database with same CATH topology
3EZPA 5FUEA 4CBTA 1T69A 5EFJD 3C0YA 5IWGA 5G17A 5JI5A 2VQWG 3RQDA 5BWZA 3EWFA 4ZUNA 4BZ9A 2VQVA 1C3RA 4RN1A 4A69A 2V5XA 4RN0A 5EFNA 5IX0A 4CQFA 5EEFA 4BZ5A 3ZNRA 4CBYA 4QA5A 5EF8A 4LY1A 4LXZA 3Q9FA 2VQMA 1ZZ0A 4RN2A 3MZ4A 1VKGA 5EEMA 5THSA 1T67A 3EZTA 5G0GA 3MENA 4QA6A 5G0IA 5G3WA 5D1BA 1C3SA 5FCWA 3F0RA 4BZ8A 5EEIA 5ICNB 3MZ3A 4QA0A 5EFHA 4QA1A 4ZURA 1T64A 1ZZ3A 5G0HA 4QA2A 5THUA 2VQQA 3F07A 5G0YA 5DC5A 3SFHA 5D1DA 4BZ6A 3MZ6A 4BZ7A 5DC7A 5THVA 5A2SA 4ZUOA 5EFGA 5G13A 3C10A 5G12A 5G11A 4ZUMA 5EF7A 5EFKB 5THTA 2V5WA 5DC6A 2VQJA 4QA4A 2VQOA 1C3PA 3Q9BA 5G0XA 2VCGA 3F06A 5G0JA 2GH6A 4ZUQA 3Q9EA 5G1AA 1W22A 3C0ZA 5D1CA 5EENA 3MZ7A 1ZZ1A 5EEKA 5LI3A 3MAXA 5DC8A 3SFFA 4BKXB 5EFBD 4QA7A 3EW8A 5G1CA 5G10A 3Q9CA 3ZNSA 5G1BA 4QA3A 4ZUPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3EZP A;  5FUE A;  4CBT A;  1T69 A;  5EFJ D;  3C0Y A;  5IWG A;  5G17 A;  5JI5 A;  2VQW G;  3RQD A;  5BWZ A;  3EWF A;  4ZUN A;  4BZ9 A;  2VQV A;  1C3R A;  4RN1 A;  4A69 A;  2V5X A;  4RN0 A;  5EFN A;  5IX0 A;  4CQF A;  5EEF A;  4BZ5 A;  3ZNR A;  4CBY A;  4QA5 A;  5EF8 A;  4LY1 A;  4LXZ A;  3Q9F A;  2VQM A;  1ZZ0 A;  4RN2 A;  3MZ4 A;  1VKG A;  5EEM A;  5THS A;  1T67 A;  3EZT A;  5G0G A;  3MEN A;  4QA6 A;  5G0I A;  5G3W A;  5D1B A;  1C3S A;  5FCW A;  3F0R A;  4BZ8 A;  5EEI A;  5ICN B;  3MZ3 A;  4QA0 A;  5EFH A;  4QA1 A;  4ZUR A;  1T64 A;  1ZZ3 A;  5G0H A;  4QA2 A;  5THU A;  2VQQ A;  3F07 A;  5G0Y A;  5DC5 A;  3SFH A;  5D1D A;  4BZ6 A;  3MZ6 A;  4BZ7 A;  5DC7 A;  5THV A;  5A2S A;  4ZUO A;  5EFG A;  5G13 A;  3C10 A;  5G12 A;  5G11 A;  4ZUM A;  5EF7 A;  5EFK B;  5THT A;  2V5W A;  5DC6 A;  2VQJ A;  4QA4 A;  2VQO A;  1C3P A;  3Q9B A;  5G0X A;  2VCG A;  3F06 A;  5G0J A;  2GH6 A;  4ZUQ A;  3Q9E A;  5G1A A;  1W22 A;  3C0Z A;  5D1C A;  5EEN A;  3MZ7 A;  1ZZ1 A;  5EEK A;  5LI3 A;  3MAX A;  5DC8 A;  3SFF A;  4BKX B;  5EFB D;  4QA7 A;  3EW8 A;  5G1C A;  5G10 A;  3Q9C A;  3ZNS A;  5G1B A;  4QA3 A;  4ZUP A; 
#chains in the Genus database with same CATH topology
 3EZP A;  5FUE A;  4CBT A;  1T69 A;  3SJT A;  5EFJ D;  3C0Y A;  5IWG A;  5G17 A;  1TBH A;  5JI5 A;  2VQW G;  4IE3 A;  4FCI A;  3RQD A;  4CEV A;  3EWF A;  4ZUN A;  4BZ9 A;  5BWZ A;  3SKK A;  2VQV A;  4RLA A;  1P8M A;  3CEV A;  3MFV A;  1C3R A;  4RN1 A;  4RHJ A;  2PLL A;  2V5X A;  4RN0 A;  5EFN A;  4A69 A;  4IXU A;  5IX0 A;  4CQF A;  5EEF A;  4BZ5 A;  4MYF A;  1TA1 A;  3E6V A;  3ZNR A;  4CBY A;  1D3V A;  2EIV A;  4QA5 A;  5EF8 A;  1WOH A;  4LY1 A;  4LXZ A;  3Q9F A;  2VQM A;  5HJA A;  1ZZ0 A;  1HQ5 A;  4RN2 A;  3MZ4 A;  1VKG A;  4Q3S A;  5EEM A;  4HZE A;  4IU1 A;  5THS A;  2CEV A;  3THJ A;  3TH7 A;  2PHO A;  1P8P A;  4GWD A;  1T67 A;  3EZT A;  4MYL A;  1TBL A;  4MXR A;  5G0G A;  3MEN A;  4QA6 A;  1P8R A;  5G0I A;  4Q3R A;  2A0M A;  1PQ3 A;  4RHK A;  5G3W A;  1HQG A;  4Q3V A;  4G3H A;  5HJ9 A;  5RLA A;  1WOI A;  4GWC A;  4GSM A;  5D1B A;  4Q41 A;  1C3S A;  1T4T A;  3MJL A;  5FCW A;  1WOG A;  3F0R A;  2PHA A;  4DZ4 A;  3NIQ A;  4BZ8 A;  5EEI A;  1T4P A;  4RHM A;  1ZPE A;  1HQH A;  5ICN B;  4IU4 A;  4RHI A;  1ZPG A;  3MZ3 A;  4QA0 A;  5EFH A;  4QA1 A;  4MYK A;  3LHL A;  3THH A;  2EF5 A;  4ZUR A;  1T64 A;  4IE2 A;  1ZZ3 A;  5G0H A;  4QA2 A;  1XFK A;  1RLA A;  3SL0 A;  5THU A;  3E8Z A;  2VQQ A;  3F07 A;  5G0Y A;  5DC5 A;  4FCK A;  3GMZ A;  3SFH A;  5D1D A;  3TF3 A;  5CEV A;  4BZ6 A;  3MZ6 A;  4IU0 A;  4BZ7 A;  5DC7 A;  5THV A;  1WVA A;  5A2S A;  2EF4 A;  4IXV A;  3F80 A;  3MFW A;  3SL1 A;  1P8O A;  4Q3Q A;  4Q3T A;  5EFG A;  4ZUO A;  3M1R A;  5G13 A;  3C10 A;  5G12 A;  5G11 A;  1P8N A;  4ZUM A;  5EF7 A;  1T5G A;  5EFK B;  1WVB A;  5THT A;  1R1O A;  2V5W A;  1CEV A;  2VQJ A;  5DC6 A;  4QA4 A;  2VQO A;  4Q3R C;  1C3P A;  3Q9B A;  1P8Q A;  3LP7 A;  3E6K A;  2VCG A;  5G0X A;  2ZAV A;  3F06 A;  5G0J A;  2GH6 A;  3NIP A;  4ZUQ A;  3Q9E A;  4Q3U A;  4GSV A;  5G1A A;  1W22 A;  4Q3P A;  1T5F A;  3GN0 A;  3LP4 A;  3C0Z A;  5D1C A;  5EEN A;  3MZ7 A;  2AEB A;  4I06 A;  1T4R A;  1HQX A;  1ZZ1 A;  4RHQ A;  5EEK A;  1GQ6 A;  4IE1 A;  5LI3 A;  1HQF A;  2RLA A;  3MAX A;  5DC8 A;  3MMR A;  3SFF A;  4BKX B;  1GQ7 A;  5EFB D;  1P8S A;  3KV2 A;  1TBJ A;  4Q40 A;  4QA7 A;  3RLA A;  3E9B A;  3NIO A;  4HWW A;  4ITY A;  3PZL A;  3THE A;  3EW8 A;  4HXQ A;  4GSZ A;  5G1C A;  3Q9C A;  5G10 A;  3ZNS A;  3E8Q A;  5G1B A;  3DJ8 A;  4Q42 A;  4QA3 A;  1T4S A;  4ZUP A;  4RHL A;  4IU5 A;  4MYN A; 
#chains in the Genus database with same CATH homology
 3EZP A;  5FUE A;  4CBT A;  1T69 A;  5EFJ D;  3C0Y A;  5IWG A;  5G17 A;  5JI5 A;  2VQW G;  3RQD A;  5BWZ A;  3EWF A;  4ZUN A;  4BZ9 A;  2VQV A;  1C3R A;  4RN1 A;  4A69 A;  2V5X A;  4RN0 A;  5EFN A;  5IX0 A;  4CQF A;  5EEF A;  4BZ5 A;  3ZNR A;  4CBY A;  4QA5 A;  5EF8 A;  4LY1 A;  4LXZ A;  3Q9F A;  2VQM A;  1ZZ0 A;  4RN2 A;  3MZ4 A;  1VKG A;  5EEM A;  5THS A;  1T67 A;  3EZT A;  5G0G A;  3MEN A;  4QA6 A;  5G0I A;  5G3W A;  5D1B A;  1C3S A;  5FCW A;  3F0R A;  4BZ8 A;  5EEI A;  5ICN B;  3MZ3 A;  4QA0 A;  5EFH A;  4QA1 A;  4ZUR A;  1T64 A;  1ZZ3 A;  5G0H A;  4QA2 A;  5THU A;  2VQQ A;  3F07 A;  5G0Y A;  5DC5 A;  3SFH A;  5D1D A;  4BZ6 A;  3MZ6 A;  4BZ7 A;  5DC7 A;  5THV A;  5A2S A;  4ZUO A;  5EFG A;  5G13 A;  3C10 A;  5G12 A;  5G11 A;  4ZUM A;  5EF7 A;  5EFK B;  5THT A;  2V5W A;  5DC6 A;  2VQJ A;  4QA4 A;  2VQO A;  1C3P A;  3Q9B A;  5G0X A;  2VCG A;  3F06 A;  5G0J A;  2GH6 A;  4ZUQ A;  3Q9E A;  5G1A A;  1W22 A;  3C0Z A;  5D1C A;  5EEN A;  3MZ7 A;  1ZZ1 A;  5EEK A;  5LI3 A;  3MAX A;  5DC8 A;  3SFF A;  4BKX B;  5EFB D;  4QA7 A;  3EW8 A;  5G1C A;  5G10 A;  3Q9C A;  3ZNS A;  5G1B A;  4QA3 A;  4ZUP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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