5G0YA

Pseudomonas aeruginosa hdah unliganded.
Total Genus 136
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
136
sequence length
372
structure length
372
Chain Sequence
RRTAFFFDELCLWHAAGPHALTLPVGGWVQPPAAAGHAESPETKRRLKSLLDVSGLTARLQLRSAPPASDEDLLRVHPAHYLERFKALSDAGGGSLGQDAPIGPGSYEIARLSAGLAIAALDAVLAGEADNAYSLSRPPGHHCLPDQAMGFCFFANIAVAIEAAKARHGVERVAVLDWDVHHGNGTQAIYYRRDDVLSISLHQDGCFPPGYSGAEDIGEDRGRGFNLNVPLLPGGGHDAYMQAMQRIVLPALERFRPQLIVVASGFDANAVDPLARMQLHSDSFRAMTAMVRDAAERHAGGRLVVVHEGGYSEAYVPFCGLAVIEELSGVRSAVRDPLRDFIELQQPNAAFRDFQRQRLEELAAQFGLCPAQ
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Hydrolase
molecule keywords HDAH
publication title Crystal Structure of a Histone Deacetylase Homologue from Pseudomonas aeruginosa.
pubmed doi rcsb
source organism Pseudomonas aeruginosa
total genus 136
structure length 372
sequence length 372
chains with identical sequence B
ec nomenclature
pdb deposition date 2016-03-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00850 Hist_deacetyl Histone deacetylase domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.800.20 Alpha Beta 3-Layer(aba) Sandwich Arginase; Chain A Histone deacetylase domain 5g0yA00
5DC5A 1ZZ1A 2VQJA 5G1CA 5EEFA 5BWZA 4QA4A 5G0HA 5THUA 3C0ZA 3F06A 2VQVA 5EFHA 1T64A 5THVA 2VCGA 1C3RA 4ZUNA 4BZ7A 4RN1A 4QA5A 3ZNRA 3EZTA 4QA6A 4QA7A 5D1CA 3RQDA 3Q9EA 5IWGA 4BZ9A 1C3PA 5EEIA 5G11A 4QA1A 4ZURA 5G0GA 4BZ6A 5THTA 5ICNB 2VQQA 4ZUPA 5THSA 3Q9FA 3F07A 5FUEA 4CBYA 4ZUQA 2V5XA 4BKXB 4CBTA 4LXZA 4RN2A 5G17A 5EFKB 5G0JA 5G0IA 4RN0A 5G10A 1T67A 3EZPA 5EEMA 2VQMA 4A69A 3EWFA 4QA3A 3Q9BA 1T69A 2GH6A 5G1BA 1W22A 3SFFA 5G1AA 5EFJD 1VKGA 5DC6A 3MZ6A 5EF7A 5G0XA 5IX0A 5G3WA 5D1DA 5EFBD 5EEKA 5EENA 4BZ8A 4QA2A 3EW8A 5D1BA 3F0RA 2VQOA 3SFHA 5DC8A 5EFGA 3MENA 5JI5A 4ZUMA 5EFNA 5EF8A 3MZ3A 5FCWA 5G12A 4LY1A 2V5WA 3MAXA 3MZ7A 3Q9CA 4QA0A 3C0YA 1ZZ3A 4ZUOA 4CQFA 1ZZ0A 3C10A 5DC7A 3MZ4A 5G0YA 5G13A 4BZ5A 2VQWG 3ZNSA 1C3SA 5A2SA 5LI3A
chains in the Genus database with same CATH superfamily
2EIVA 5DC5A 1ZZ1A 4MYLA 2VQJA 5G1CA 1TBLA 3NIQA 1P8NA 5EEFA 1P8OA 5BWZA 1P8RA 4QA4A 3TH7A 1P8SA 2AEBA 3LHLA 4I06A 4MYFA 3CEVA 4GSVA 1D3VA 3C0ZA 5G0HA 1WOIA 3F06A 5THUA 2ZAVA 2VQVA 1GQ7A 5EFHA 1HQHA 1T64A 3E8QA 2VCGA 5THVA 1C3RA 4RHJA 4ZUNA 4BZ7A 4RN1A 4FCKA 4QA5A 3ZNRA 5HJAA 3EZTA 4IXUA 2A0MA 1R1OA 3E8ZA 4QA6A 1ZPGA 4QA7A 4RHMA 5D1CA 3RQDA 4RHIA 3Q9EA 5IWGA 4FCIA 4Q42A 4BZ9A 4G3HA 1C3PA 4GSMA 5EEIA 5G11A 4QA1A 1TBHA 4ZURA 4MXRA 1WVAA 4Q3UA 4Q3QA 5G0GA 2PLLA 3SJTA 4BZ6A 1TBJA 5THTA 4Q3TA 5ICNB 2VQQA 4ZUPA 5THSA 1CEVA 3MJLA 3Q9FA 1PQ3A 4GSZA 3MFWA 4RHLA 3F07A 1P8MA 4IU5A 4RLAA 5FUEA 4CBYA 4ZUQA 1TA1A 2V5XA 1ZPEA 1T4RA 1HQFA 4BKXB 4CBTA 4LXZA 4Q3RA 4RN2A 5EFKB 5G17A 1WOGA 1T5FA 5RLAA 5G0JA 2RLAA 5G0IA 5HJ9A 1RLAA 4RN0A 5G10A 1T4SA 4IE1A 1T67A 4IU1A 3EZPA 5EEMA 5CEVA 3RLAA 3THJA 2VQMA 4ITYA 4A69A 3EWFA 4QA3A 1WVBA 1T69A 3Q9BA 1WOHA 3SL0A 2GH6A 5G1BA 1P8PA 1W22A 3GN0A 2PHOA 3MMRA 5G1AA 3SFFA 4Q3PA 1XFKA 5EFJD 3E9BA 1VKGA 4Q41A 1HQXA 4Q40A 4MYNA 4IU4A 3SKKA 4GWDA 2CEVA 3NIOA 5DC6A 3MZ6A 3THHA 5EF7A 3LP4A 5G0XA 1T5GA 4MYKA 4Q3SA 5G3WA 5D1DA 5IX0A 4RHKA 5EFBD 4RHQA 5EEKA 3TF3A 5EENA 4IU0A 1HQGA 3M1RA 3SL1A 4BZ8A 4QA2A 3E6VA 3EW8A 3PZLA 5D1BA 3F0RA 4IE3A 3THEA 4GWCA 3E6KA 2VQOA 3SFHA 5DC8A 1T4TA 5EFGA 3MENA 2EF4A 4HXQA 4HZEA 4IXVA 4ZUMA 4Q3RC 5JI5A 1T4PA 1GQ6A 4DZ4A 5EFNA 3KV2A 4CEVA 5EF8A 3MFVA 3MZ3A 3NIPA 5FCWA 1HQ5A 5G12A 3DJ8A 4LY1A 4HWWA 2V5WA 3MAXA 3MZ7A 3Q9CA 4QA0A 3C0YA 1ZZ3A 4ZUOA 2EF5A 4CQFA 1ZZ0A 2PHAA 3C10A 3LP7A 5DC7A 3GMZA 3MZ4A 5G0YA 4Q3VA 5G13A 4BZ5A 1P8QA 2VQWG 1C3SA 3ZNSA 5A2SA 4IE2A 3F80A 5LI3A
chains in the Genus database with same CATH topology
5DC5A 1ZZ1A 2VQJA 5G1CA 5EEFA 5BWZA 4QA4A 5G0HA 5THUA 3C0ZA 3F06A 2VQVA 5EFHA 1T64A 5THVA 2VCGA 1C3RA 4ZUNA 4BZ7A 4RN1A 4QA5A 3ZNRA 3EZTA 4QA6A 4QA7A 5D1CA 3RQDA 3Q9EA 5IWGA 4BZ9A 1C3PA 5EEIA 5G11A 4QA1A 4ZURA 5G0GA 4BZ6A 5THTA 5ICNB 2VQQA 4ZUPA 5THSA 3Q9FA 3F07A 5FUEA 4CBYA 4ZUQA 2V5XA 4BKXB 4CBTA 4LXZA 4RN2A 5G17A 5EFKB 5G0JA 5G0IA 4RN0A 5G10A 1T67A 3EZPA 5EEMA 2VQMA 4A69A 3EWFA 4QA3A 3Q9BA 1T69A 2GH6A 5G1BA 1W22A 3SFFA 5G1AA 5EFJD 1VKGA 5DC6A 3MZ6A 5EF7A 5G0XA 5IX0A 5G3WA 5D1DA 5EFBD 5EEKA 5EENA 4BZ8A 4QA2A 3EW8A 5D1BA 3F0RA 2VQOA 3SFHA 5DC8A 5EFGA 3MENA 5JI5A 4ZUMA 5EFNA 5EF8A 3MZ3A 5FCWA 5G12A 4LY1A 2V5WA 3MAXA 3MZ7A 3Q9CA 4QA0A 3C0YA 1ZZ3A 4ZUOA 4CQFA 1ZZ0A 3C10A 5DC7A 3MZ4A 5G0YA 5G13A 4BZ5A 2VQWG 3ZNSA 1C3SA 5A2SA 5LI3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5DC5 A;  1ZZ1 A;  2VQJ A;  5G1C A;  5EEF A;  5BWZ A;  4QA4 A;  5G0H A;  5THU A;  3C0Z A;  3F06 A;  2VQV A;  5EFH A;  1T64 A;  5THV A;  2VCG A;  1C3R A;  4ZUN A;  4BZ7 A;  4RN1 A;  4QA5 A;  3ZNR A;  3EZT A;  4QA6 A;  4QA7 A;  5D1C A;  3RQD A;  3Q9E A;  5IWG A;  4BZ9 A;  1C3P A;  5EEI A;  5G11 A;  4QA1 A;  4ZUR A;  5G0G A;  4BZ6 A;  5THT A;  5ICN B;  2VQQ A;  4ZUP A;  5THS A;  3Q9F A;  3F07 A;  5FUE A;  4CBY A;  4ZUQ A;  2V5X A;  4BKX B;  4CBT A;  4LXZ A;  4RN2 A;  5G17 A;  5EFK B;  5G0J A;  5G0I A;  4RN0 A;  5G10 A;  1T67 A;  3EZP A;  5EEM A;  2VQM A;  4A69 A;  3EWF A;  4QA3 A;  3Q9B A;  1T69 A;  2GH6 A;  5G1B A;  1W22 A;  3SFF A;  5G1A A;  5EFJ D;  1VKG A;  5DC6 A;  3MZ6 A;  5EF7 A;  5G0X A;  5IX0 A;  5G3W A;  5D1D A;  5EFB D;  5EEK A;  5EEN A;  4BZ8 A;  4QA2 A;  3EW8 A;  5D1B A;  3F0R A;  2VQO A;  3SFH A;  5DC8 A;  5EFG A;  3MEN A;  5JI5 A;  4ZUM A;  5EFN A;  5EF8 A;  3MZ3 A;  5FCW A;  5G12 A;  4LY1 A;  2V5W A;  3MAX A;  3MZ7 A;  3Q9C A;  4QA0 A;  3C0Y A;  1ZZ3 A;  4ZUO A;  4CQF A;  1ZZ0 A;  3C10 A;  5DC7 A;  3MZ4 A;  5G0Y A;  5G13 A;  4BZ5 A;  2VQW G;  3ZNS A;  1C3S A;  5A2S A;  5LI3 A; 
#chains in the Genus database with same CATH topology
 2EIV A;  5DC5 A;  1ZZ1 A;  4MYL A;  2VQJ A;  5G1C A;  1TBL A;  3NIQ A;  1P8N A;  5EEF A;  1P8O A;  5BWZ A;  1P8R A;  4QA4 A;  3TH7 A;  1P8S A;  2AEB A;  3LHL A;  4I06 A;  4MYF A;  3CEV A;  4GSV A;  1D3V A;  3C0Z A;  5G0H A;  1WOI A;  3F06 A;  5THU A;  2ZAV A;  2VQV A;  1GQ7 A;  5EFH A;  1HQH A;  1T64 A;  3E8Q A;  2VCG A;  5THV A;  1C3R A;  4RHJ A;  4ZUN A;  4BZ7 A;  4RN1 A;  4FCK A;  4QA5 A;  3ZNR A;  5HJA A;  3EZT A;  4IXU A;  2A0M A;  1R1O A;  3E8Z A;  4QA6 A;  1ZPG A;  4QA7 A;  4RHM A;  5D1C A;  3RQD A;  4RHI A;  3Q9E A;  5IWG A;  4FCI A;  4Q42 A;  4BZ9 A;  4G3H A;  1C3P A;  4GSM A;  5EEI A;  5G11 A;  4QA1 A;  1TBH A;  4ZUR A;  4MXR A;  1WVA A;  4Q3U A;  4Q3Q A;  5G0G A;  2PLL A;  3SJT A;  4BZ6 A;  1TBJ A;  5THT A;  4Q3T A;  5ICN B;  2VQQ A;  4ZUP A;  5THS A;  1CEV A;  3MJL A;  3Q9F A;  1PQ3 A;  4GSZ A;  3MFW A;  4RHL A;  3F07 A;  1P8M A;  4IU5 A;  4RLA A;  5FUE A;  4CBY A;  4ZUQ A;  1TA1 A;  2V5X A;  1ZPE A;  1T4R A;  1HQF A;  4BKX B;  4CBT A;  4LXZ A;  4Q3R A;  4RN2 A;  5EFK B;  5G17 A;  1WOG A;  1T5F A;  5RLA A;  5G0J A;  2RLA A;  5G0I A;  5HJ9 A;  1RLA A;  4RN0 A;  5G10 A;  1T4S A;  4IE1 A;  1T67 A;  4IU1 A;  3EZP A;  5EEM A;  5CEV A;  3RLA A;  3THJ A;  2VQM A;  4ITY A;  4A69 A;  3EWF A;  4QA3 A;  1WVB A;  1T69 A;  3Q9B A;  1WOH A;  3SL0 A;  2GH6 A;  5G1B A;  1P8P A;  1W22 A;  3GN0 A;  2PHO A;  3MMR A;  5G1A A;  3SFF A;  4Q3P A;  1XFK A;  5EFJ D;  3E9B A;  1VKG A;  4Q41 A;  1HQX A;  4Q40 A;  4MYN A;  4IU4 A;  3SKK A;  4GWD A;  2CEV A;  3NIO A;  5DC6 A;  3MZ6 A;  3THH A;  5EF7 A;  3LP4 A;  5G0X A;  1T5G A;  4MYK A;  4Q3S A;  5G3W A;  5D1D A;  5IX0 A;  4RHK A;  5EFB D;  4RHQ A;  5EEK A;  3TF3 A;  5EEN A;  4IU0 A;  1HQG A;  3M1R A;  3SL1 A;  4BZ8 A;  4QA2 A;  3E6V A;  3EW8 A;  3PZL A;  5D1B A;  3F0R A;  4IE3 A;  3THE A;  4GWC A;  3E6K A;  2VQO A;  3SFH A;  5DC8 A;  1T4T A;  5EFG A;  3MEN A;  2EF4 A;  4HXQ A;  4HZE A;  4IXV A;  4ZUM A;  4Q3R C;  5JI5 A;  1T4P A;  1GQ6 A;  4DZ4 A;  5EFN A;  3KV2 A;  4CEV A;  5EF8 A;  3MFV A;  3MZ3 A;  3NIP A;  5FCW A;  1HQ5 A;  5G12 A;  3DJ8 A;  4LY1 A;  4HWW A;  2V5W A;  3MAX A;  3MZ7 A;  3Q9C A;  4QA0 A;  3C0Y A;  1ZZ3 A;  4ZUO A;  2EF5 A;  4CQF A;  1ZZ0 A;  2PHA A;  3C10 A;  3LP7 A;  5DC7 A;  3GMZ A;  3MZ4 A;  5G0Y A;  4Q3V A;  5G13 A;  4BZ5 A;  1P8Q A;  2VQW G;  1C3S A;  3ZNS A;  5A2S A;  4IE2 A;  3F80 A;  5LI3 A; 
#chains in the Genus database with same CATH homology
 5DC5 A;  1ZZ1 A;  2VQJ A;  5G1C A;  5EEF A;  5BWZ A;  4QA4 A;  5G0H A;  5THU A;  3C0Z A;  3F06 A;  2VQV A;  5EFH A;  1T64 A;  5THV A;  2VCG A;  1C3R A;  4ZUN A;  4BZ7 A;  4RN1 A;  4QA5 A;  3ZNR A;  3EZT A;  4QA6 A;  4QA7 A;  5D1C A;  3RQD A;  3Q9E A;  5IWG A;  4BZ9 A;  1C3P A;  5EEI A;  5G11 A;  4QA1 A;  4ZUR A;  5G0G A;  4BZ6 A;  5THT A;  5ICN B;  2VQQ A;  4ZUP A;  5THS A;  3Q9F A;  3F07 A;  5FUE A;  4CBY A;  4ZUQ A;  2V5X A;  4BKX B;  4CBT A;  4LXZ A;  4RN2 A;  5G17 A;  5EFK B;  5G0J A;  5G0I A;  4RN0 A;  5G10 A;  1T67 A;  3EZP A;  5EEM A;  2VQM A;  4A69 A;  3EWF A;  4QA3 A;  3Q9B A;  1T69 A;  2GH6 A;  5G1B A;  1W22 A;  3SFF A;  5G1A A;  5EFJ D;  1VKG A;  5DC6 A;  3MZ6 A;  5EF7 A;  5G0X A;  5IX0 A;  5G3W A;  5D1D A;  5EFB D;  5EEK A;  5EEN A;  4BZ8 A;  4QA2 A;  3EW8 A;  5D1B A;  3F0R A;  2VQO A;  3SFH A;  5DC8 A;  5EFG A;  3MEN A;  5JI5 A;  4ZUM A;  5EFN A;  5EF8 A;  3MZ3 A;  5FCW A;  5G12 A;  4LY1 A;  2V5W A;  3MAX A;  3MZ7 A;  3Q9C A;  4QA0 A;  3C0Y A;  1ZZ3 A;  4ZUO A;  4CQF A;  1ZZ0 A;  3C10 A;  5DC7 A;  3MZ4 A;  5G0Y A;  5G13 A;  4BZ5 A;  2VQW G;  3ZNS A;  1C3S A;  5A2S A;  5LI3 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...