5GADW

Rnc-srp-sr complex early state
Total Genus 23
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
94
structure length
94
Chain Sequence
MFTINAEVRKEQGKGASRRLRAANKFPAIIYGGKEAPLAIELDHDKVMNMQAKAEFYSEVLTIVVDGKEIKVKAQDVQRHPYKPKLQHIDFVRA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords ESRP 4.5S RNA
publication title Structures of the E. coli translating ribosome with SRP and its receptor and with the translocon.
pubmed doi rcsb
total genus 23
structure length 94
sequence length 94
ec nomenclature
pdb deposition date 2015-11-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
W PF01386 Ribosomal_L25p Ribosomal L25p family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.10 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Ribosomal Protein L25; Chain P 5gadW00
1EXDA 4JXXA 2ZJPS 3PIPS 4UY88 3CF5S 1O0BA 1GTSA 4WFAS 5GAHW 3PIOS 3AIIA 1O0CA 1DFUP 3DLLS 4WCES 5GAGW 5BNZA 5DM7S 5HL7S 4WF9S 4IOAS 2ZJQS 5JVGS 4U67S 1QTQA 2RD2A 4JYZA 5IZNA 5JVHS 4IOCS 5GADW 1FEUA 1QRSA 2ZJRS 1D6KA 1QRUA 1EUYA 5DM6S 4H3SA 2RE8A 1GTRA 4JXZA 3J7ZV 2HZ7A 4WFBS 4IO9S 1QRTA 4P2BA 1B75A 4WFNS 5GAEW 1EUQA 1NYLA 1ZJWA
chains in the Genus database with same CATH superfamily
1EXDA 3CF5S 2G5DA 1O0BA 2PICA 3KW2A 4WFAS 4E8BA 2ZJQS 4IOCS 2PI8A 1QRSA 2NWAA 1EUYA 3CZBA 2CX8A 1Z85A 1V6ZA 2PJJA 1UDXA 1EUQA 4JXXA 3PIPS 1VHKA 3AIIA 1DFUP 2EGVA 4WCES 5BNZA 4J3CA 1QTQA 2RD2A 2G6GA 5GADW 2ZJRS 1D6KA 1QRUA 2Z0YA 2PNWA 3X1LB 3J7ZV 4WFNS 2GAEA 2ZJPS 3PIOS 1O0CA 3DLLS 3W2WB 1VHYA 3W2VB 5HL7S 4WF9S 4U67S 4JYZA 5IZNA 1NXZA 1FEUA 2AE0X 5DM6S 2EGWA 1GTRA 2HZ7A 1QRTA 1NYLA 1ZJWA 4UY88 1GTSA 4H4KA 5GAHW 5GAGW 5DM7S 4L69A 4IOAS 5JVHS 4V194 4H3SA 2RE8A 4JXZA 4IO9S 4WFBS 4P2BA 1B75A 5JVGS 5GAEW
chains in the Genus database with same CATH topology
1EXDA 4JXXA 2ZJPS 3PIPS 4UY88 3CF5S 1O0BA 1GTSA 4H4KA 4WFAS 5GAHW 3PIOS 3AIIA 1O0CA 1DFUP 3DLLS 3W2WB 4WCES 5GAGW 5BNZA 3W2VB 5DM7S 5HL7S 4WF9S 4IOAS 2ZJQS 5JVGS 4U67S 1QTQA 2RD2A 4JYZA 5IZNA 5JVHS 4IOCS 5GADW 1FEUA 1QRSA 2ZJRS 1D6KA 1QRUA 1EUYA 4V194 5DM6S 4H3SA 2RE8A 3X1LB 1GTRA 4JXZA 3J7ZV 2HZ7A 4WFBS 4IO9S 1QRTA 4P2BA 1B75A 4WFNS 1UDXA 5GAEW 1EUQA 1NYLA 1ZJWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1EXD A;  4JXX A;  2ZJP S;  3PIP S;  4UY8 8;  3CF5 S;  1O0B A;  1GTS A;  4WFA S;  5GAH W;  3PIO S;  3AII A;  1O0C A;  1DFU P;  3DLL S;  4WCE S;  5GAG W;  5BNZ A;  5DM7 S;  5HL7 S;  4WF9 S;  4IOA S;  2ZJQ S;  5JVG S;  4U67 S;  1QTQ A;  2RD2 A;  4JYZ A;  5IZN A;  5JVH S;  4IOC S;  5GAD W;  1FEU A;  1QRS A;  2ZJR S;  1D6K A;  1QRU A;  1EUY A;  5DM6 S;  4H3S A;  2RE8 A;  1GTR A;  4JXZ A;  3J7Z V;  2HZ7 A;  4WFB S;  4IO9 S;  1QRT A;  4P2B A;  1B75 A;  4WFN S;  5GAE W;  1EUQ A;  1NYL A;  1ZJW A; 
#chains in the Genus database with same CATH topology
 1EXD A;  3CF5 S;  2G5D A;  1O0B A;  2PIC A;  3KW2 A;  4WFA S;  4E8B A;  2ZJQ S;  4IOC S;  2PI8 A;  1QRS A;  2NWA A;  1EUY A;  3CZB A;  2CX8 A;  1Z85 A;  1V6Z A;  2PJJ A;  1UDX A;  1EUQ A;  4JXX A;  3PIP S;  1VHK A;  3AII A;  1DFU P;  2EGV A;  4WCE S;  5BNZ A;  4J3C A;  1QTQ A;  2RD2 A;  2G6G A;  5GAD W;  2ZJR S;  1D6K A;  1QRU A;  2Z0Y A;  2PNW A;  3X1L B;  3J7Z V;  4WFN S;  2GAE A;  2ZJP S;  3PIO S;  1O0C A;  3DLL S;  3W2W B;  1VHY A;  3W2V B;  5HL7 S;  4WF9 S;  4U67 S;  4JYZ A;  5IZN A;  1NXZ A;  1FEU A;  2AE0 X;  5DM6 S;  2EGW A;  1GTR A;  2HZ7 A;  1QRT A;  1NYL A;  1ZJW A;  4UY8 8;  1GTS A;  4H4K A;  5GAH W;  5GAG W;  5DM7 S;  4L69 A;  4IOA S;  5JVH S;  4V19 4;  4H3S A;  2RE8 A;  4JXZ A;  4IO9 S;  4WFB S;  4P2B A;  1B75 A;  5JVG S;  5GAE W; 
#chains in the Genus database with same CATH homology
 1EXD A;  4JXX A;  2ZJP S;  3PIP S;  4UY8 8;  3CF5 S;  1O0B A;  1GTS A;  4H4K A;  4WFA S;  5GAH W;  3PIO S;  3AII A;  1O0C A;  1DFU P;  3DLL S;  3W2W B;  4WCE S;  5GAG W;  5BNZ A;  3W2V B;  5DM7 S;  5HL7 S;  4WF9 S;  4IOA S;  2ZJQ S;  5JVG S;  4U67 S;  1QTQ A;  2RD2 A;  4JYZ A;  5IZN A;  5JVH S;  4IOC S;  5GAD W;  1FEU A;  1QRS A;  2ZJR S;  1D6K A;  1QRU A;  1EUY A;  4V19 4;  5DM6 S;  4H3S A;  2RE8 A;  3X1L B;  1GTR A;  4JXZ A;  3J7Z V;  2HZ7 A;  4WFB S;  4IO9 S;  1QRT A;  4P2B A;  1B75 A;  4WFN S;  1UDX A;  5GAE W;  1EUQ A;  1NYL A;  1ZJW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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