5GAEW

Rnc in complex with a translocating secyeg
Total Genus 24
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
94
structure length
94
Chain Sequence
MFTINAEVRKEQGKGASRRLRAANKFPAIIYGGKEAPLAIELDHDKVMNMQAKAEFYSEVLTIVVDGKEIKVKAQDVQRHPYKPKLQHIDFVRA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 23S rRNA
publication title Structures of the E. coli translating ribosome with SRP and its receptor and with the translocon.
pubmed doi rcsb
total genus 24
structure length 94
sequence length 94
ec nomenclature
pdb deposition date 2015-11-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
W PF01386 Ribosomal_L25p Ribosomal L25p family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.10 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Ribosomal Protein L25; Chain P 5gaeW00
2RE8A 1D6KA 5BNZA 4WFAS 1QTQA 4IOAS 4WFNS 1DFUP 2HZ7A 5DM7S 1QRSA 5GADW 5GAEW 3PIPS 5GAHW 3J7ZV 4WF9S 3CF5S 5DM6S 4WFBS 1FEUA 4UY88 4JXZA 4P2BA 4H3SA 1B75A 4IO9S 1GTRA 3DLLS 4JXXA 1GTSA 2ZJQS 5JVHS 1O0BA 2ZJRS 1O0CA 4JYZA 2RD2A 1NYLA 1QRTA 1QRUA 2ZJPS 4IOCS 1EUYA 5JVGS 5GAGW 5IZNA 5HL7S 4WCES 3AIIA 1EUQA 4U67S 3PIOS 1EXDA 1ZJWA
chains in the Genus database with same CATH superfamily
2G6GA 2RE8A 1D6KA 1QTQA 3CF5S 4UY88 2Z0YA 2PNWA 4IO9S 1GTRA 3DLLS 4JXXA 1UDXA 2ZJQS 4JYZA 2RD2A 1QRUA 3AIIA 2CX8A 2PICA 1Z85A 1QRSA 5GAHW 4WFBS 2AE0X 1GTSA 1QRTA 1EUYA 1VHYA 5IZNA 4WCES 3W2VB 1FEUA 4J3CA 1NXZA 5BNZA 4WFAS 4IOAS 4E8BA 1DFUP 1V6ZA 2HZ7A 5DM7S 5GADW 3J7ZV 5DM6S 2NWAA 4JXZA 4P2BA 1B75A 2EGWA 5JVHS 2ZJRS 1O0CA 2EGVA 4U67S 1EXDA 1VHKA 2PI8A 2PJJA 4WFNS 5GAEW 3PIPS 4V194 4WF9S 3KW2A 3X1LB 3CZBA 2G5DA 4H3SA 3W2WB 1O0BA 4H4KA 1NYLA 4L69A 2ZJPS 4IOCS 5JVGS 2GAEA 5GAGW 5HL7S 1EUQA 3PIOS 1ZJWA
chains in the Genus database with same CATH topology
2RE8A 1D6KA 5BNZA 4WFAS 1QTQA 4IOAS 4WFNS 1DFUP 2HZ7A 5DM7S 1QRSA 5GADW 5GAEW 3PIPS 5GAHW 3J7ZV 4V194 4WF9S 3CF5S 3X1LB 5DM6S 4WFBS 1FEUA 4UY88 4JXZA 4P2BA 4H3SA 1B75A 4IO9S 3W2WB 1GTRA 3DLLS 4JXXA 1UDXA 1GTSA 2ZJQS 5JVHS 1O0BA 2ZJRS 1O0CA 4JYZA 2RD2A 4H4KA 1NYLA 1QRTA 1QRUA 2ZJPS 4IOCS 1EUYA 5JVGS 5GAGW 5IZNA 5HL7S 4WCES 3AIIA 3W2VB 4U67S 3PIOS 1EUQA 1EXDA 1ZJWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2RE8 A;  1D6K A;  5BNZ A;  4WFA S;  1QTQ A;  4IOA S;  4WFN S;  1DFU P;  2HZ7 A;  5DM7 S;  1QRS A;  5GAD W;  5GAE W;  3PIP S;  5GAH W;  3J7Z V;  4WF9 S;  3CF5 S;  5DM6 S;  4WFB S;  1FEU A;  4UY8 8;  4JXZ A;  4P2B A;  4H3S A;  1B75 A;  4IO9 S;  1GTR A;  3DLL S;  4JXX A;  1GTS A;  2ZJQ S;  5JVH S;  1O0B A;  2ZJR S;  1O0C A;  4JYZ A;  2RD2 A;  1NYL A;  1QRT A;  1QRU A;  2ZJP S;  4IOC S;  1EUY A;  5JVG S;  5GAG W;  5IZN A;  5HL7 S;  4WCE S;  3AII A;  1EUQ A;  4U67 S;  3PIO S;  1EXD A;  1ZJW A; 
#chains in the Genus database with same CATH topology
 2G6G A;  2RE8 A;  1D6K A;  1QTQ A;  3CF5 S;  4UY8 8;  2Z0Y A;  2PNW A;  4IO9 S;  1GTR A;  3DLL S;  4JXX A;  1UDX A;  2ZJQ S;  4JYZ A;  2RD2 A;  1QRU A;  3AII A;  2CX8 A;  2PIC A;  1Z85 A;  1QRS A;  5GAH W;  4WFB S;  2AE0 X;  1GTS A;  1QRT A;  1EUY A;  1VHY A;  5IZN A;  4WCE S;  3W2V B;  1FEU A;  4J3C A;  1NXZ A;  5BNZ A;  4WFA S;  4IOA S;  4E8B A;  1DFU P;  1V6Z A;  2HZ7 A;  5DM7 S;  5GAD W;  3J7Z V;  5DM6 S;  2NWA A;  4JXZ A;  4P2B A;  1B75 A;  2EGW A;  5JVH S;  2ZJR S;  1O0C A;  2EGV A;  4U67 S;  1EXD A;  1VHK A;  2PI8 A;  2PJJ A;  4WFN S;  5GAE W;  3PIP S;  4V19 4;  4WF9 S;  3KW2 A;  3X1L B;  3CZB A;  2G5D A;  4H3S A;  3W2W B;  1O0B A;  4H4K A;  1NYL A;  4L69 A;  2ZJP S;  4IOC S;  5JVG S;  2GAE A;  5GAG W;  5HL7 S;  1EUQ A;  3PIO S;  1ZJW A; 
#chains in the Genus database with same CATH homology
 2RE8 A;  1D6K A;  5BNZ A;  4WFA S;  1QTQ A;  4IOA S;  4WFN S;  1DFU P;  2HZ7 A;  5DM7 S;  1QRS A;  5GAD W;  5GAE W;  3PIP S;  5GAH W;  3J7Z V;  4V19 4;  4WF9 S;  3CF5 S;  3X1L B;  5DM6 S;  4WFB S;  1FEU A;  4UY8 8;  4JXZ A;  4P2B A;  4H3S A;  1B75 A;  4IO9 S;  3W2W B;  1GTR A;  3DLL S;  4JXX A;  1UDX A;  1GTS A;  2ZJQ S;  5JVH S;  1O0B A;  2ZJR S;  1O0C A;  4JYZ A;  2RD2 A;  4H4K A;  1NYL A;  1QRT A;  1QRU A;  2ZJP S;  4IOC S;  1EUY A;  5JVG S;  5GAG W;  5IZN A;  5HL7 S;  4WCE S;  3AII A;  3W2V B;  4U67 S;  3PIO S;  1EUQ A;  1EXD A;  1ZJW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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