5GAHi

Rnc in complex with srp with detached ng domain
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
126
structure length
126
Chain Sequence
GFDLNDFLEQLRQMKNMGGXXXXXXXXXXXXXXXXXXXXXXDDKVLVRMEAIINSMTMKERAKPEIIKGSRKRRIAAGCGMQVQDVNRLLKQFDDMQRMMKKMKKGGXXXXXXXXXXXXXXXXXXX
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Ribosome
molecule keywords SRP 4.5S RNA
publication title Structures of the E. coli translating ribosome with SRP and its receptor and with the translocon.
pubmed doi rcsb
total genus 30
structure length 126
sequence length 126
ec nomenclature
pdb deposition date 2015-11-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
i PF00448 SRP54 SRP54-type protein, GTPase domain
i PF02881 SRP54_N SRP54-type protein, helical bundle domain
i PF02978 SRP_SPB Signal peptide binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.260.30 Mainly Alpha Orthogonal Bundle 434 Repressor (Amino-terminal Domain) Signal recognition particle, SRP54 subunit, M-domain 5gahi00
2PXKA 3KL4A 5GAGi 2PXQA 2PXLA 2PXPA 2JQEA 2PXDA 3NDBB 2PXUA 3DM5A 2PXBA 1QZXA 2V3CC 2XXAA 2FFHA 1MFQC 1QB2A 2PXFA 2PXEA 3LQXA 5GAHi 2PXTA 1DULA 1HQ1A 2PXVA
chains in the Genus database with same CATH superfamily
4PU7A 5DSXA 1CQTA 4YG7B 4X4CA 2PPXA 2HINA 3EUSA 1X2LA 4GHJA 2HCSA 2PUDA 4IA8A 4IVZA 4MCTA 3SR4A 3GZCA 1DWKA 2EF8A 2EWTA 2PXTA 2R63A 2IV1A 3GN5B 5DTRA 3QFIA 1JH9A 2HFZA 2KEJA 3SX0A 1LCCA 4GQMA 1RZSA 3GZDC 2XXPA 4WVLA 4DE8A 2PUFA 2PXEA 2FJRA 2GZUA 5GAHi 4YG4A 1UXDA 2MQKA 3U3WA 4J1WA 2J7WA 3ZHMA 3KL4A 2O49A 2LYPA 4X4IA 3A9ZA 2JQEA 2GRLA 5A7LA 1RPEL 4OB4A 4EQZA 1RZRD 4FN3A 2BNOA 1LLIA 1AU7A 3JXBC 3F6WA 3GUUA 2MEZA 3L1PA 1BDHA 1CJGA 3ME5A 1PRAA 2A6CA 3JXCL 1VPWA 3R09A 1JFSA 2LNMA 2HSGA 4YG1A 1GT0C 2KPJA 2XI8A 1PRUA 3GN5A 3OWQA 1POUA 4Y42A 3QYXA 2AXZA 3ZHIA 4EZIA 4ER5A 1ZVVA 3TFLA 1QQAA 1R69A 2PE5A 2PXQA 1ZUGA 3BDNA 2OR1L 4X4DA 3G0TA 1PNRA 2CSFA 1RZRA 2H8RA 3IVPA 4IWRA 1LCDA 5DTMA 3LQXA 3KJXA 3MLFA 1L1MA 1E3OC 3CROL 3BD1A 4X4BA 1QP0A 4PU3C 1OSLA 4X4FA 2PXLA 3OQOA 3G5GA 4EK9A 4YBAA 2XIUA 3A9XA 1QB2A 4Z5HA 1QPZA 3KXAA 3QWGA 3SCHA 2PIJA 1NERA 1XWRA 2XXQA 1NW3A 3M9LA 3H5TA 1OCTC 2ODRD 3SCFA 1ZZ9A 3QOXA 2IVQA 2IVBA 3NXHA 1UXCA 2LCVA 1DULA 1HQ1A 2J7UA 1R63A 2O38A 5K98B 2PUEA 3TEPA 5GAGi 3D1NI 3FYAA 3GBFA 3PXPA 2MXDA 3OQMA 3TELA 1O4XA 1EFAA 1JWLA 3QOWA 4HRAA 1JFTA 1Y9QA 2XCJA 3S8QA 2EBYA 1RIOA 3OQNA 3VWSA 4F8DA 5JUWA 1ZZ6A 1YSEA 1HF0A 2LYJA 2AXUA 2PUCA 2L1PA 2LYRA 1ZPQA 5DRTA 2VEOA 2IU7A 1ZS4A 2JCGA 2JVLA 2ICPA 2PUAA 5DRYA 3B7HA 1WETA 2BJCA 1Y7YA 2R1JL 4EKIA 2LYSA 4EKGA 4I6TA 1IC8A 2LLVA 3DNVB 4X4EA 3MEJA 3OMTA 1ZZBA 2OFYA 3UFDA 3KZ3A 1LMB3 1PERL 3LFPA 1S7EA 3QF3A 4FBIA 2M4HA 3SCGA 3O9XA 2BNNA 4PU4C 2AW6A 2PXBA 3NZLA 2XSDC 4JQDA 3OP9A 1WH6A 2L49A 1NEQA 4I6RA 3CECA 2PXUA 1WIZA 3F52A 1X57A 4NDWA 2IVGA 1ZZ8A 2L8NA 5DTQA 1ZAYA 3NDBB 2ICTA 3VK0A 3DM5A 2LYKA 4MCXA 4ER6A 1BDIA 2PXVA 4X4GA 4O8BA 2WIUB 2IUOA 2D5VA 2LLWA 4ER7A 4J1XA 4ER0A 4Z5DA 2PXDA 2HCNA 2KZ8A 2PUBA 2BNMA 1QZXA 4JCXA 2XXAA 2FFHA 2XJ3A 1MFQC 2PUGA 4JCYA 2LYQA 3A9YA 2YBDA 4I8TA 3PE5A 2O4AA 2CROA 2PXKA 3F51A 4ER3A 2AXVA 3FYMA 2PXPA 1ZZCA 2KEIA 2WUSR 4PU8A 3QQ6A 1QP7A 4Z5CA 2AUWA 2GRMA 2B5AA 2V3CC 5DT2A 3LISA 2AWIA 2KEKA 3HZIB 4OBMA 4X4HA 1SQ8A 4Z59A 1QP4A 3RZZA 4I6UA 1WH8A 3UWPA 1QQBA 3G7DA 2PXFA 3ZKCA 3R1FA 3OKZA 4Z58A 2LYLA 1ADRA 3GZDA 1DW9A 1ZZ7A 3CLCA 3BS3A 1U2ZA 4Q2JA 3TRBA 3ZPXA 4YARA 1PRVA 3JXDL 3NROA 1LQCA 1UTXA 3FMYA 1B0NA 4DE9A
chains in the Genus database with same CATH topology
2PXKA 3KL4A 5GAGi 2PXQA 2PXLA 2PXPA 2JQEA 2PXDA 3NDBB 2PXUA 3DM5A 2PXBA 1QZXA 2V3CC 2XXAA 2FFHA 1MFQC 1QB2A 2PXFA 2PXEA 3LQXA 5GAHi 2PXTA 1DULA 1HQ1A 2PXVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PXK A;  3KL4 A;  5GAG i;  2PXQ A;  2PXL A;  2PXP A;  2JQE A;  2PXD A;  3NDB B;  2PXU A;  3DM5 A;  2PXB A;  1QZX A;  2V3C C;  2XXA A;  2FFH A;  1MFQ C;  1QB2 A;  2PXF A;  2PXE A;  3LQX A;  5GAH i;  2PXT A;  1DUL A;  1HQ1 A;  2PXV A; 
#chains in the Genus database with same CATH topology
 4PU7 A;  5DSX A;  1CQT A;  4YG7 B;  4X4C A;  2PPX A;  2HIN A;  3EUS A;  1X2L A;  4GHJ A;  2HCS A;  2PUD A;  4IA8 A;  4IVZ A;  4MCT A;  3SR4 A;  3GZC A;  1DWK A;  2EF8 A;  2EWT A;  2PXT A;  2R63 A;  2IV1 A;  3GN5 B;  5DTR A;  3QFI A;  1JH9 A;  2HFZ A;  2KEJ A;  3SX0 A;  1LCC A;  4GQM A;  1RZS A;  3GZD C;  2XXP A;  4WVL A;  4DE8 A;  2PUF A;  2PXE A;  2FJR A;  2GZU A;  5GAH i;  4YG4 A;  1UXD A;  2MQK A;  3U3W A;  4J1W A;  2J7W A;  3ZHM A;  3KL4 A;  2O49 A;  2LYP A;  4X4I A;  3A9Z A;  2JQE A;  2GRL A;  5A7L A;  1RPE L;  4OB4 A;  4EQZ A;  1RZR D;  4FN3 A;  2BNO A;  1LLI A;  1AU7 A;  3JXB C;  3F6W A;  3GUU A;  2MEZ A;  3L1P A;  1BDH A;  1CJG A;  3ME5 A;  1PRA A;  2A6C A;  3JXC L;  1VPW A;  3R09 A;  1JFS A;  2LNM A;  2HSG A;  4YG1 A;  1GT0 C;  2KPJ A;  2XI8 A;  1PRU A;  3GN5 A;  3OWQ A;  1POU A;  4Y42 A;  3QYX A;  2AXZ A;  3ZHI A;  4EZI A;  4ER5 A;  1ZVV A;  3TFL A;  1QQA A;  1R69 A;  2PE5 A;  2PXQ A;  1ZUG A;  3BDN A;  2OR1 L;  4X4D A;  3G0T A;  1PNR A;  2CSF A;  1RZR A;  2H8R A;  3IVP A;  4IWR A;  1LCD A;  5DTM A;  3LQX A;  3KJX A;  3MLF A;  1L1M A;  1E3O C;  3CRO L;  3BD1 A;  4X4B A;  1QP0 A;  4PU3 C;  1OSL A;  4X4F A;  2PXL A;  3OQO A;  3G5G A;  4EK9 A;  4YBA A;  2XIU A;  3A9X A;  1QB2 A;  4Z5H A;  1QPZ A;  3KXA A;  3QWG A;  3SCH A;  2PIJ A;  1NER A;  1XWR A;  2XXQ A;  1NW3 A;  3M9L A;  3H5T A;  1OCT C;  2ODR D;  3SCF A;  1ZZ9 A;  3QOX A;  2IVQ A;  2IVB A;  3NXH A;  1UXC A;  2LCV A;  1DUL A;  1HQ1 A;  2J7U A;  1R63 A;  2O38 A;  5K98 B;  2PUE A;  3TEP A;  5GAG i;  3D1N I;  3FYA A;  3GBF A;  3PXP A;  2MXD A;  3OQM A;  3TEL A;  1O4X A;  1EFA A;  1JWL A;  3QOW A;  4HRA A;  1JFT A;  1Y9Q A;  2XCJ A;  3S8Q A;  2EBY A;  1RIO A;  3OQN A;  3VWS A;  4F8D A;  5JUW A;  1ZZ6 A;  1YSE A;  1HF0 A;  2LYJ A;  2AXU A;  2PUC A;  2L1P A;  2LYR A;  1ZPQ A;  5DRT A;  2VEO A;  2IU7 A;  1ZS4 A;  2JCG A;  2JVL A;  2ICP A;  2PUA A;  5DRY A;  3B7H A;  1WET A;  2BJC A;  1Y7Y A;  2R1J L;  4EKI A;  2LYS A;  4EKG A;  4I6T A;  1IC8 A;  2LLV A;  3DNV B;  4X4E A;  3MEJ A;  3OMT A;  1ZZB A;  2OFY A;  3UFD A;  3KZ3 A;  1LMB 3;  1PER L;  3LFP A;  1S7E A;  3QF3 A;  4FBI A;  2M4H A;  3SCG A;  3O9X A;  2BNN A;  4PU4 C;  2AW6 A;  2PXB A;  3NZL A;  2XSD C;  4JQD A;  3OP9 A;  1WH6 A;  2L49 A;  1NEQ A;  4I6R A;  3CEC A;  2PXU A;  1WIZ A;  3F52 A;  1X57 A;  4NDW A;  2IVG A;  1ZZ8 A;  2L8N A;  5DTQ A;  1ZAY A;  3NDB B;  2ICT A;  3VK0 A;  3DM5 A;  2LYK A;  4MCX A;  4ER6 A;  1BDI A;  2PXV A;  4X4G A;  4O8B A;  2WIU B;  2IUO A;  2D5V A;  2LLW A;  4ER7 A;  4J1X A;  4ER0 A;  4Z5D A;  2PXD A;  2HCN A;  2KZ8 A;  2PUB A;  2BNM A;  1QZX A;  4JCX A;  2XXA A;  2FFH A;  2XJ3 A;  1MFQ C;  2PUG A;  4JCY A;  2LYQ A;  3A9Y A;  2YBD A;  4I8T A;  3PE5 A;  2O4A A;  2CRO A;  2PXK A;  3F51 A;  4ER3 A;  2AXV A;  3FYM A;  2PXP A;  1ZZC A;  2KEI A;  2WUS R;  4PU8 A;  3QQ6 A;  1QP7 A;  4Z5C A;  2AUW A;  2GRM A;  2B5A A;  2V3C C;  5DT2 A;  3LIS A;  2AWI A;  2KEK A;  3HZI B;  4OBM A;  4X4H A;  1SQ8 A;  4Z59 A;  1QP4 A;  3RZZ A;  4I6U A;  1WH8 A;  3UWP A;  1QQB A;  3G7D A;  2PXF A;  3ZKC A;  3R1F A;  3OKZ A;  4Z58 A;  2LYL A;  1ADR A;  3GZD A;  1DW9 A;  1ZZ7 A;  3CLC A;  3BS3 A;  1U2Z A;  4Q2J A;  3TRB A;  3ZPX A;  4YAR A;  1PRV A;  3JXD L;  3NRO A;  1LQC A;  1UTX A;  3FMY A;  1B0N A;  4DE9 A; 
#chains in the Genus database with same CATH homology
 2PXK A;  3KL4 A;  5GAG i;  2PXQ A;  2PXL A;  2PXP A;  2JQE A;  2PXD A;  3NDB B;  2PXU A;  3DM5 A;  2PXB A;  1QZX A;  2V3C C;  2XXA A;  2FFH A;  1MFQ C;  1QB2 A;  2PXF A;  2PXE A;  3LQX A;  5GAH i;  2PXT A;  1DUL A;  1HQ1 A;  2PXV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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