5GJWE

Structure of the mammalian voltage-gated calcium channel cav1.1 complex for classii map
Total Genus 44
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
44
sequence length
216
structure length
166
Chain Sequence
MSPTEAPKVRVTLFCILVGIVLAMTAVVSDHWAVLSPHCEAAHFGLWRICTKRGEKNCSYFSISAAAISVFSLGFLIMGTICALMAFRKKRDYLLRPASMFYVFAGLCLFVSLEVMRQSVKRMIEYYYSWSFACACAAFVLLFLGGISLLLFSLPRMPQNPWESCM
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Membrane protein
molecule keywords Voltage-dependent L-type calcium channel subunit alpha-1S
publication title Structure of the voltage-gated calcium channel Cav1.1 at 3.6 angstrom resolution
pubmed doi rcsb
source organism Oryctolagus cuniculus
total genus 44
structure length 166
sequence length 216
ec nomenclature
pdb deposition date 2016-07-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
E PF13903 Claudin_2 PMP-22/EMP/MP20/Claudin tight junction
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.140.150 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A; domain 3 5gjwE00
4P79A 3X29A 5GJWE 5GJVE
chains in the Genus database with same CATH superfamily
2JBTA 4FF4A 1WS9A 1U8VA 3VKHA 4X28A 4N5FA 5B5WA 2WBIA 1R3BA 2JBSA 3D1IA 1SC5A 2BU6A 1Y8OA 2FONA 2JBRA 2BU7A 4L3YA 1K8TA 4MPCA 1K93A 5K3HA 3MPJA 1JQIA 2YYIA 5M4KA 4M9AA 3UU9A 4H7QA 4QICA 1XFXA 2BU2A 1FS9A 1EGDA 2J7AA 4WJYA 2Q8GA 5M4NA 1GKXA 3L1TA 4Q5BA 4L3XA 4AKHA 3BNJA 3VKGA 5GJVE 2OT4A 2YYKA 5M4PA 2HJNA 4OO2A 4HR3A 4MPEA 2CJ4A 4O5MA 1PI1A 3MMOA 2RF7A 2PO4A 2E81A 1LVCA 5K3IA 3CRLA 4P79A 3CRKA 2DDHA 4NXLA 3BNGA 2VR0A 4MP2A 5J6AA 3SCEA 4FF1A 2REHA 2EC5A 2XS1A 3LGQA 4AKIA 2R03A 1RJ1A 1T9GA 2FP2A 2LFWA 3GQTA 3N0RA 4Q0TA 5GJWE 2Q8IA 3MPIA 5K3JA 4DOYA 2EBFX 4KCFA 3X0YA 4FF3A 3BNHA 3TORA 2ZO5A 5BRMA 2EBHX 2YYJA 1PK0A 2CX9A 2UXWA 3B96A 2OJQA 2C0UA 3II9A 1XFZA 4FZ4A 4JIZA 4ZXVA 4DZYA 1SIRA 3TTBA 4E02A 1X8ZA 3D9FA 3AFEA 4H81A 3HWCA 4XVXA 2Q8FA 3EOMA 4H85A 3Q22A 2Z1QA 4X28C 2AO2A 4LQSB 3C3LA 4AI6A 5J71A 3OIBA 1IVHA 2XQRB 2ZDXA 4L38A 1Y8NA 3D6BA 3FCJA 4Q1OA 3C2PA 2OEXA 3TZ2A 3OWMA 1XFYA 4Q5CA 4L3ZA 1GJVA 1GU6A 1Y0VA 4V26A 3SWOA 1FS8A 3C46A 1XFWA 4JEKA 2R02A 1UDYA 2PNRA 3LG1A 3P4TA 5B6BA 4G97A 4IRNA 4V25A 3VADA 2ZAFA 2PG0A 3CE2A 1XG2B 3X0XA 3PFDA 3GM6A 3D9DA 2BU5A 2YYMA 2YYGA 3D9EA 3BNFA 4F0XA 4KTOA 2R0MA 1EGEA 1Y8PA 1IS2A 2RDZA 3UBRA 3R7KA 3TZ5A 1BUCA 2GBBA 2QR4A 2E80A 2VF1A 4RM7A 2F6LA 2CJ8A 4KSAA 1QDBA 1RX0A 2FP1A 3MXLA 4HKRA 4KSFA 1RP3A 3Q23A 2VIGA 2CJ5A 5K3GA 2IX5A 1XFVA 1FS7A 4J1VA 4W9UA 3MDEA 4MPNA 5BRKA 4IV6A 4MP7A 1X90A 2Q8HA 4ZYJA 1EGCA 2IX6A 2AZEA 2JIFA 2R0NA 3AFFA 3MKHA 4HKSA 2R05A 1UKWA 4P13A 3Q24A 3SXQA 4Q4UA 3RKHA 5M4MA 2BTZA 2RFQA 1XFUA 2ZDYA 4LQQB 3KMLA 2OR0A 1X91A 2D29A 1JM6A 1SK6A 1W07A 4L1FA 2E0AA 1OAHA 2C12A 1SIQA 3MDDA 4JIOA 4FF2A 2A1TA 2YGWA 3TZ0A 4U83A 4Q17A 1R2JA 1GKZA 3FO3A 2DVLA 3EONA 3NF4A 2ZKJA 3TZ4A 4E00A 3Q0AA 1RJ4A 3OWAA 3GNCA 4KS9A 4G5EA 5B5VA 3SF6A 1K90A 3D2RA 3F29A 3S7WA 3X29A 2CJ6A 4E01A 2CJ7A 2YYLA 2EBAA 2XS8A 3M9VA 3D9GA 2BU8A 1S26A 4AKGA 2OEVA
chains in the Genus database with same CATH topology
2EC5A 4FF4A 4AKIA 1Y0VA 3VKHA 2FP2A 2LFWA 3N0RA 2AZEA 4HKSA 5GJWE 3C46A 1XFWA 1SC5A 3Q24A 1K8TA 2EBFX 1K93A 1XFUA 4G97A 4FF3A 3KMLA 3CE2A 2EBHX 1SK6A 1PK0A 4FZ4A 1XFXA 4QICA 4F0XA 1XFZA 4FF2A 2YGWA 4AKHA 3VKGA 5GJVE 2GBBA 2VF1A 2QR4A 3Q22A 2F6LA 2AO2A 3Q0AA 3C3LA 2PO4A 4KSAA 4AI6A 1LVCA 2FP1A 4HKRA 4KS9A 4KSFA 1RP3A 1K90A 3Q23A 3X29A 4P79A 1XFVA 3C2PA 1XFYA 4FF1A 1S26A 4AKGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4P79 A;  3X29 A;  5GJW E;  5GJV E; 
#chains in the Genus database with same CATH topology
 2JBT A;  4FF4 A;  1WS9 A;  1U8V A;  3VKH A;  4X28 A;  4N5F A;  5B5W A;  2WBI A;  1R3B A;  2JBS A;  3D1I A;  1SC5 A;  2BU6 A;  1Y8O A;  2FON A;  2JBR A;  2BU7 A;  4L3Y A;  1K8T A;  4MPC A;  1K93 A;  5K3H A;  3MPJ A;  1JQI A;  2YYI A;  5M4K A;  4M9A A;  3UU9 A;  4H7Q A;  4QIC A;  1XFX A;  2BU2 A;  1FS9 A;  1EGD A;  2J7A A;  4WJY A;  2Q8G A;  5M4N A;  1GKX A;  3L1T A;  4Q5B A;  4L3X A;  4AKH A;  3BNJ A;  3VKG A;  5GJV E;  2OT4 A;  2YYK A;  5M4P A;  2HJN A;  4OO2 A;  4HR3 A;  4MPE A;  2CJ4 A;  4O5M A;  1PI1 A;  3MMO A;  2RF7 A;  2PO4 A;  2E81 A;  1LVC A;  5K3I A;  3CRL A;  4P79 A;  3CRK A;  2DDH A;  4NXL A;  3BNG A;  2VR0 A;  4MP2 A;  5J6A A;  3SCE A;  4FF1 A;  2REH A;  2EC5 A;  2XS1 A;  3LGQ A;  4AKI A;  2R03 A;  1RJ1 A;  1T9G A;  2FP2 A;  2LFW A;  3GQT A;  3N0R A;  4Q0T A;  5GJW E;  2Q8I A;  3MPI A;  5K3J A;  4DOY A;  2EBF X;  4KCF A;  3X0Y A;  4FF3 A;  3BNH A;  3TOR A;  2ZO5 A;  5BRM A;  2EBH X;  2YYJ A;  1PK0 A;  2CX9 A;  2UXW A;  3B96 A;  2OJQ A;  2C0U A;  3II9 A;  1XFZ A;  4FZ4 A;  4JIZ A;  4ZXV A;  4DZY A;  1SIR A;  3TTB A;  4E02 A;  1X8Z A;  3D9F A;  3AFE A;  4H81 A;  3HWC A;  4XVX A;  2Q8F A;  3EOM A;  4H85 A;  3Q22 A;  2Z1Q A;  4X28 C;  2AO2 A;  4LQS B;  3C3L A;  4AI6 A;  5J71 A;  3OIB A;  1IVH A;  2XQR B;  2ZDX A;  4L38 A;  1Y8N A;  3D6B A;  3FCJ A;  4Q1O A;  3C2P A;  2OEX A;  3TZ2 A;  3OWM A;  1XFY A;  4Q5C A;  4L3Z A;  1GJV A;  1GU6 A;  1Y0V A;  4V26 A;  3SWO A;  1FS8 A;  3C46 A;  1XFW A;  4JEK A;  2R02 A;  1UDY A;  2PNR A;  3LG1 A;  3P4T A;  5B6B A;  4G97 A;  4IRN A;  4V25 A;  3VAD A;  2ZAF A;  2PG0 A;  3CE2 A;  1XG2 B;  3X0X A;  3PFD A;  3GM6 A;  3D9D A;  2BU5 A;  2YYM A;  2YYG A;  3D9E A;  3BNF A;  4F0X A;  4KTO A;  2R0M A;  1EGE A;  1Y8P A;  1IS2 A;  2RDZ A;  3UBR A;  3R7K A;  3TZ5 A;  1BUC A;  2GBB A;  2QR4 A;  2E80 A;  2VF1 A;  4RM7 A;  2F6L A;  2CJ8 A;  4KSA A;  1QDB A;  1RX0 A;  2FP1 A;  3MXL A;  4HKR A;  4KSF A;  1RP3 A;  3Q23 A;  2VIG A;  2CJ5 A;  5K3G A;  2IX5 A;  1XFV A;  1FS7 A;  4J1V A;  4W9U A;  3MDE A;  4MPN A;  5BRK A;  4IV6 A;  4MP7 A;  1X90 A;  2Q8H A;  4ZYJ A;  1EGC A;  2IX6 A;  2AZE A;  2JIF A;  2R0N A;  3AFF A;  3MKH A;  4HKS A;  2R05 A;  1UKW A;  4P13 A;  3Q24 A;  3SXQ A;  4Q4U A;  3RKH A;  5M4M A;  2BTZ A;  2RFQ A;  1XFU A;  2ZDY A;  4LQQ B;  3KML A;  2OR0 A;  1X91 A;  2D29 A;  1JM6 A;  1SK6 A;  1W07 A;  4L1F A;  2E0A A;  1OAH A;  2C12 A;  1SIQ A;  3MDD A;  4JIO A;  4FF2 A;  2A1T A;  2YGW A;  3TZ0 A;  4U83 A;  4Q17 A;  1R2J A;  1GKZ A;  3FO3 A;  2DVL A;  3EON A;  3NF4 A;  2ZKJ A;  3TZ4 A;  4E00 A;  3Q0A A;  1RJ4 A;  3OWA A;  3GNC A;  4KS9 A;  4G5E A;  5B5V A;  3SF6 A;  1K90 A;  3D2R A;  3F29 A;  3S7W A;  3X29 A;  2CJ6 A;  4E01 A;  2CJ7 A;  2YYL A;  2EBA A;  2XS8 A;  3M9V A;  3D9G A;  2BU8 A;  1S26 A;  4AKG A;  2OEV A; 
#chains in the Genus database with same CATH homology
 2EC5 A;  4FF4 A;  4AKI A;  1Y0V A;  3VKH A;  2FP2 A;  2LFW A;  3N0R A;  2AZE A;  4HKS A;  5GJW E;  3C46 A;  1XFW A;  1SC5 A;  3Q24 A;  1K8T A;  2EBF X;  1K93 A;  1XFU A;  4G97 A;  4FF3 A;  3KML A;  3CE2 A;  2EBH X;  1SK6 A;  1PK0 A;  4FZ4 A;  1XFX A;  4QIC A;  4F0X A;  1XFZ A;  4FF2 A;  2YGW A;  4AKH A;  3VKG A;  5GJV E;  2GBB A;  2VF1 A;  2QR4 A;  3Q22 A;  2F6L A;  2AO2 A;  3Q0A A;  3C3L A;  2PO4 A;  4KSA A;  4AI6 A;  1LVC A;  2FP1 A;  4HKR A;  4KS9 A;  4KSF A;  1RP3 A;  1K90 A;  3Q23 A;  3X29 A;  4P79 A;  1XFV A;  3C2P A;  1XFY A;  4FF1 A;  1S26 A;  4AKG A; 
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similar chains in the Genus database (?% sequence similarity)
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#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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