5GUIA

Crystal structure of the n-terminal domain of caseinolytic protease associated chaperone clpc1 from arabidopsis thaliana
Total Genus 62
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
62
sequence length
148
structure length
148
Chain Sequence
MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQVIRMVGENLEH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Chaperone
molecule keywords Chaperone protein ClpC1, chloroplastic
publication title Crystal structures reveal N-terminal Domain of Arabidopsis thaliana ClpD to be highly divergent from that of ClpC1
doi rcsb
source organism Arabidopsis thaliana
total genus 62
structure length 148
sequence length 148
ec nomenclature
pdb deposition date 2016-08-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02861 Clp_N Clp amino terminal domain, pathogenicity island component
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1780.10 Mainly Alpha Orthogonal Bundle Double Clp-N motif Clp, N-terminal domain 5guiA00
1MBVA 1R6CX 4Y0BA 3PXGA 1QVRA 3ZRJA 1MBUA 1R6BX 4IODA 1R6OA 1MG9B 4UQWA 3WDBA 3WDDA 4Y0CA 1KHYA 4HH6A 1LZWB 5GUIA 2K77A 1K6KA 3FESA 2Y1QA 3FH2A 4P15A 2Y1RA 3WDEA 3ZRIA 4HH5A 1MBXA 4IRFA 1KSFX 1R6QA 5HBNA 3WDCA
chains in the Genus database with same CATH superfamily
1MBVA 1R6CX 4Y0BA 3PXGA 1QVRA 3ZRJA 1MBUA 1R6BX 4IODA 1R6OA 1MG9B 4UQWA 3WDBA 3WDDA 4Y0CA 1KHYA 4HH6A 1LZWB 5GUIA 2K77A 1K6KA 3FESA 2Y1QA 3FH2A 4P15A 2Y1RA 3WDEA 3ZRIA 4HH5A 1MBXA 4IRFA 1KSFX 1R6QA 5HBNA 3WDCA
chains in the Genus database with same CATH topology
1MBVA 1R6CX 4Y0BA 3PXGA 1QVRA 3ZRJA 1MBUA 1R6BX 4IODA 1R6OA 1MG9B 4UQWA 3WDBA 3WDDA 4Y0CA 1KHYA 4HH6A 1LZWB 5GUIA 2K77A 1K6KA 3FESA 2Y1QA 3FH2A 4P15A 2Y1RA 3WDEA 3ZRIA 4HH5A 1MBXA 4IRFA 1KSFX 1R6QA 5HBNA 3WDCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1MBV A;  1R6C X;  4Y0B A;  3PXG A;  1QVR A;  3ZRJ A;  1MBU A;  1R6B X;  4IOD A;  1R6O A;  1MG9 B;  4UQW A;  3WDB A;  3WDD A;  4Y0C A;  1KHY A;  4HH6 A;  1LZW B;  5GUI A;  2K77 A;  1K6K A;  3FES A;  2Y1Q A;  3FH2 A;  4P15 A;  2Y1R A;  3WDE A;  3ZRI A;  4HH5 A;  1MBX A;  4IRF A;  1KSF X;  1R6Q A;  5HBN A;  3WDC A; 
#chains in the Genus database with same CATH topology
 1MBV A;  1R6C X;  4Y0B A;  3PXG A;  1QVR A;  3ZRJ A;  1MBU A;  1R6B X;  4IOD A;  1R6O A;  1MG9 B;  4UQW A;  3WDB A;  3WDD A;  4Y0C A;  1KHY A;  4HH6 A;  1LZW B;  5GUI A;  2K77 A;  1K6K A;  3FES A;  2Y1Q A;  3FH2 A;  4P15 A;  2Y1R A;  3WDE A;  3ZRI A;  4HH5 A;  1MBX A;  4IRF A;  1KSF X;  1R6Q A;  5HBN A;  3WDC A; 
#chains in the Genus database with same CATH homology
 1MBV A;  1R6C X;  4Y0B A;  3PXG A;  1QVR A;  3ZRJ A;  1MBU A;  1R6B X;  4IOD A;  1R6O A;  1MG9 B;  4UQW A;  3WDB A;  3WDD A;  4Y0C A;  1KHY A;  4HH6 A;  1LZW B;  5GUI A;  2K77 A;  1K6K A;  3FES A;  2Y1Q A;  3FH2 A;  4P15 A;  2Y1R A;  3WDE A;  3ZRI A;  4HH5 A;  1MBX A;  4IRF A;  1KSF X;  1R6Q A;  5HBN A;  3WDC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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