5HVKB

Crystal structure of limk1 mutant d460n in complex with full-length cofilin-1
Total Genus 34
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
34
sequence length
165
structure length
164
Chain Sequence
AGVAVSDGVIKVFNDMKVRKSSTPEEVKKRKKAVLFCLSEDKKNIILEEGKEILVGDVGQTVDDPYTTFVKMLPDKDCRYALYDATYETKESKKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKLTGIKHELQANCYEEVKDRCTLAEKLGGSAVISLEGKPL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords LIM domain kinase 1
publication title Structural Basis for Noncanonical Substrate Recognition of Cofilin/ADF Proteins by LIM Kinases.
pubmed doi rcsb
source organism Homo sapiens
total genus 34
structure length 164
sequence length 165
ec nomenclature
pdb deposition date 2016-01-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00241 Cofilin_ADF Cofilin/tropomyosin-type actin-binding protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 5hvkB00
1NMDG 3FFKA 1TMWA 1X67A 4KEFA 2MOTA 1WFSA 3EH1A 3EGDB 5HVKD 5IVUA 4JD2H 5KYXB 1D4XG 5KYUB 1VFQA 3CIPG 4PKHB 1PCXA 3L50A 2LJ8A 1SVQA 2MP4A 1CNUA 1MDUA 1Q8GA 1VKKA 1AK6A 2KVKA 2D8BA 1RGIG 1TVJA 3Q2BA 5FAEA 2QTVA 1AHQA 2NUPA 1T3XA 2HD7A 1P8ZG 1KCQA 3DAWB 1ESVS 2XFAA 5L6WC 2L72A 2FGHA 1UDMA 1J72A 5A1MA 2VACA 1Q8XA 3EG9A 5HVKB 1NM1G 1DEJS 3FG6A 4KEDA 2FH4A 1D0NA 1T3YA 2FH3A 3FG7A 3FFNA 5DD2A 2LXXA 2FH1A 4S10C 3TU5B 3EGXA 3EFOA 3EGXB 3EFOB 1COFA 2NUPB 4CBUG 1M2OA 5KYYA 1PD1A 1HQZ1 2VIKA 3A5OS 4CBXG 2FF6G 4KEEA 3A5MS 3CJCG 3A5LS 2NUTA 2NUTB 4PKIG 1YVNG 4PKGG 1M4JA 3EG9B 4LIZA 2MV2A 4BEX1 2LLFA 5KYWA 1QPVA 1WM4A 2VILA 1SVYA 1T44G 1H1VG 5FAFA 3A5NS 2FH2A 1EQYS 1CFYA 2XF1A 1YAGG 4CBWG 2W0IA 2I2QA 3EGDA 1PD0A 1WNJA 1F7SA 5KYYB 1P8XA 3CI5G 5KYXA 1NLVG 5KYUA 1JHWA 4Z94G 1C0GS 3CJBG 1C0FS 1SVRA 1M2VA 5KYWB 1M2VB 1AK7A 5KYNA 2FF3A 1NPHA 1T2LA 1V6FA 3EH2A
chains in the Genus database with same CATH superfamily
1NMDG 3FFKA 1TMWA 1X67A 4KEFA 2MOTA 1WFSA 3EH1A 3EGDB 5HVKD 5IVUA 4JD2H 5KYXB 1D4XG 5KYUB 1VFQA 3CIPG 4PKHB 1PCXA 3L50A 2LJ8A 1SVQA 2MP4A 1CNUA 1MDUA 1Q8GA 1VKKA 1AK6A 2KVKA 2D8BA 1RGIG 1TVJA 3Q2BA 5FAEA 3DA7A 2QTVA 1AHQA 2NUPA 1T3XA 2HD7A 1P8ZG 1KCQA 3DAWB 1ESVS 2XFAA 5L6WC 2L72A 2FGHA 1UDMA 1J72A 5A1MA 2VACA 1Q8XA 3EG9A 5HVKB 1NM1G 1DEJS 3FG6A 4KEDA 2FH4A 1D0NA 1T3YA 2FH3A 3FG7A 3FFNA 5DD2A 2LXXA 2FH1A 4S10C 3TU5B 3EGXA 3EFOA 3EGXB 3EFOB 1COFA 2NUPB 4CBUG 1M2OA 5KYYA 1PD1A 1HQZ1 2VIKA 3A5OS 4CBXG 2FF6G 4KEEA 3A5MS 3CJCG 3A5LS 2NUTA 2NUTB 4PKIG 1YVNG 4PKGG 1M4JA 3EG9B 4LIZA 2MV2A 4BEX1 2LLFA 5KYWA 1QPVA 1WM4A 2VILA 1SVYA 1T44G 1H1VG 5FAFA 3A5NS 2FH2A 1EQYS 1CFYA 2XF1A 1YAGG 4CBWG 2W0IA 2I2QA 3EGDA 1PD0A 1WNJA 1F7SA 5KYYB 1P8XA 3CI5G 5KYXA 1NLVG 5KYUA 1JHWA 4Z94G 1C0GS 3CJBG 1C0FS 1SVRA 1M2VA 5KYWB 1M2VB 1AK7A 5KYNA 2FF3A 1NPHA 1T2LA 1V6FA 3EH2A
chains in the Genus database with same CATH topology
1NMDG 3FFKA 1TMWA 1X67A 4KEFA 2MOTA 1WFSA 3EH1A 3EGDB 5HVKD 5IVUA 4JD2H 5KYXB 1D4XG 5KYUB 1VFQA 3CIPG 4PKHB 1PCXA 3L50A 2LJ8A 1SVQA 2MP4A 1CNUA 1MDUA 1Q8GA 1VKKA 1AK6A 2KVKA 2D8BA 1RGIG 1TVJA 3Q2BA 5FAEA 3DA7A 2QTVA 1AHQA 2NUPA 1T3XA 2HD7A 1P8ZG 1KCQA 3DAWB 1ESVS 2XFAA 5L6WC 2L72A 2FGHA 1UDMA 1J72A 5A1MA 2VACA 1Q8XA 3EG9A 5HVKB 1NM1G 1DEJS 3FG6A 4KEDA 2FH4A 1D0NA 1T3YA 2FH3A 3FG7A 3FFNA 5DD2A 2LXXA 2FH1A 4S10C 3TU5B 3EGXA 3EFOA 3EGXB 3EFOB 1COFA 2NUPB 4CBUG 1M2OA 5KYYA 1PD1A 1HQZ1 2VIKA 3A5OS 4CBXG 2FF6G 4KEEA 3A5MS 3CJCG 3A5LS 2NUTA 2NUTB 4PKIG 1YVNG 4PKGG 1M4JA 3EG9B 4LIZA 2MV2A 4BEX1 2LLFA 5KYWA 1QPVA 1WM4A 2VILA 1SVYA 1T44G 1H1VG 5FAFA 3A5NS 2FH2A 1EQYS 1CFYA 2XF1A 1YAGG 4CBWG 2W0IA 2I2QA 3EGDA 1PD0A 1WNJA 1F7SA 5KYYB 1P8XA 3CI5G 5KYXA 1NLVG 5KYUA 1JHWA 4Z94G 1C0GS 3CJBG 1C0FS 1SVRA 1M2VA 5KYWB 1M2VB 1AK7A 5KYNA 2FF3A 1NPHA 1T2LA 1V6FA 3EH2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1NMD G;  3FFK A;  1TMW A;  1X67 A;  4KEF A;  2MOT A;  1WFS A;  3EH1 A;  3EGD B;  5HVK D;  5IVU A;  4JD2 H;  5KYX B;  1D4X G;  5KYU B;  1VFQ A;  3CIP G;  4PKH B;  1PCX A;  3L50 A;  2LJ8 A;  1SVQ A;  2MP4 A;  1CNU A;  1MDU A;  1Q8G A;  1VKK A;  1AK6 A;  2KVK A;  2D8B A;  1RGI G;  1TVJ A;  3Q2B A;  5FAE A;  2QTV A;  1AHQ A;  2NUP A;  1T3X A;  2HD7 A;  1P8Z G;  1KCQ A;  3DAW B;  1ESV S;  2XFA A;  5L6W C;  2L72 A;  2FGH A;  1UDM A;  1J72 A;  5A1M A;  2VAC A;  1Q8X A;  3EG9 A;  5HVK B;  1NM1 G;  1DEJ S;  3FG6 A;  4KED A;  2FH4 A;  1D0N A;  1T3Y A;  2FH3 A;  3FG7 A;  3FFN A;  5DD2 A;  2LXX A;  2FH1 A;  4S10 C;  3TU5 B;  3EGX A;  3EFO A;  3EGX B;  3EFO B;  1COF A;  2NUP B;  4CBU G;  1M2O A;  5KYY A;  1PD1 A;  1HQZ 1;  2VIK A;  3A5O S;  4CBX G;  2FF6 G;  4KEE A;  3A5M S;  3CJC G;  3A5L S;  2NUT A;  2NUT B;  4PKI G;  1YVN G;  4PKG G;  1M4J A;  3EG9 B;  4LIZ A;  2MV2 A;  4BEX 1;  2LLF A;  5KYW A;  1QPV A;  1WM4 A;  2VIL A;  1SVY A;  1T44 G;  1H1V G;  5FAF A;  3A5N S;  2FH2 A;  1EQY S;  1CFY A;  2XF1 A;  1YAG G;  4CBW G;  2W0I A;  2I2Q A;  3EGD A;  1PD0 A;  1WNJ A;  1F7S A;  5KYY B;  1P8X A;  3CI5 G;  5KYX A;  1NLV G;  5KYU A;  1JHW A;  4Z94 G;  1C0G S;  3CJB G;  1C0F S;  1SVR A;  1M2V A;  5KYW B;  1M2V B;  1AK7 A;  5KYN A;  2FF3 A;  1NPH A;  1T2L A;  1V6F A;  3EH2 A; 
#chains in the Genus database with same CATH topology
 1NMD G;  3FFK A;  1TMW A;  1X67 A;  4KEF A;  2MOT A;  1WFS A;  3EH1 A;  3EGD B;  5HVK D;  5IVU A;  4JD2 H;  5KYX B;  1D4X G;  5KYU B;  1VFQ A;  3CIP G;  4PKH B;  1PCX A;  3L50 A;  2LJ8 A;  1SVQ A;  2MP4 A;  1CNU A;  1MDU A;  1Q8G A;  1VKK A;  1AK6 A;  2KVK A;  2D8B A;  1RGI G;  1TVJ A;  3Q2B A;  5FAE A;  3DA7 A;  2QTV A;  1AHQ A;  2NUP A;  1T3X A;  2HD7 A;  1P8Z G;  1KCQ A;  3DAW B;  1ESV S;  2XFA A;  5L6W C;  2L72 A;  2FGH A;  1UDM A;  1J72 A;  5A1M A;  2VAC A;  1Q8X A;  3EG9 A;  5HVK B;  1NM1 G;  1DEJ S;  3FG6 A;  4KED A;  2FH4 A;  1D0N A;  1T3Y A;  2FH3 A;  3FG7 A;  3FFN A;  5DD2 A;  2LXX A;  2FH1 A;  4S10 C;  3TU5 B;  3EGX A;  3EFO A;  3EGX B;  3EFO B;  1COF A;  2NUP B;  4CBU G;  1M2O A;  5KYY A;  1PD1 A;  1HQZ 1;  2VIK A;  3A5O S;  4CBX G;  2FF6 G;  4KEE A;  3A5M S;  3CJC G;  3A5L S;  2NUT A;  2NUT B;  4PKI G;  1YVN G;  4PKG G;  1M4J A;  3EG9 B;  4LIZ A;  2MV2 A;  4BEX 1;  2LLF A;  5KYW A;  1QPV A;  1WM4 A;  2VIL A;  1SVY A;  1T44 G;  1H1V G;  5FAF A;  3A5N S;  2FH2 A;  1EQY S;  1CFY A;  2XF1 A;  1YAG G;  4CBW G;  2W0I A;  2I2Q A;  3EGD A;  1PD0 A;  1WNJ A;  1F7S A;  5KYY B;  1P8X A;  3CI5 G;  5KYX A;  1NLV G;  5KYU A;  1JHW A;  4Z94 G;  1C0G S;  3CJB G;  1C0F S;  1SVR A;  1M2V A;  5KYW B;  1M2V B;  1AK7 A;  5KYN A;  2FF3 A;  1NPH A;  1T2L A;  1V6F A;  3EH2 A; 
#chains in the Genus database with same CATH homology
 1NMD G;  3FFK A;  1TMW A;  1X67 A;  4KEF A;  2MOT A;  1WFS A;  3EH1 A;  3EGD B;  5HVK D;  5IVU A;  4JD2 H;  5KYX B;  1D4X G;  5KYU B;  1VFQ A;  3CIP G;  4PKH B;  1PCX A;  3L50 A;  2LJ8 A;  1SVQ A;  2MP4 A;  1CNU A;  1MDU A;  1Q8G A;  1VKK A;  1AK6 A;  2KVK A;  2D8B A;  1RGI G;  1TVJ A;  3Q2B A;  5FAE A;  3DA7 A;  2QTV A;  1AHQ A;  2NUP A;  1T3X A;  2HD7 A;  1P8Z G;  1KCQ A;  3DAW B;  1ESV S;  2XFA A;  5L6W C;  2L72 A;  2FGH A;  1UDM A;  1J72 A;  5A1M A;  2VAC A;  1Q8X A;  3EG9 A;  5HVK B;  1NM1 G;  1DEJ S;  3FG6 A;  4KED A;  2FH4 A;  1D0N A;  1T3Y A;  2FH3 A;  3FG7 A;  3FFN A;  5DD2 A;  2LXX A;  2FH1 A;  4S10 C;  3TU5 B;  3EGX A;  3EFO A;  3EGX B;  3EFO B;  1COF A;  2NUP B;  4CBU G;  1M2O A;  5KYY A;  1PD1 A;  1HQZ 1;  2VIK A;  3A5O S;  4CBX G;  2FF6 G;  4KEE A;  3A5M S;  3CJC G;  3A5L S;  2NUT A;  2NUT B;  4PKI G;  1YVN G;  4PKG G;  1M4J A;  3EG9 B;  4LIZ A;  2MV2 A;  4BEX 1;  2LLF A;  5KYW A;  1QPV A;  1WM4 A;  2VIL A;  1SVY A;  1T44 G;  1H1V G;  5FAF A;  3A5N S;  2FH2 A;  1EQY S;  1CFY A;  2XF1 A;  1YAG G;  4CBW G;  2W0I A;  2I2Q A;  3EGD A;  1PD0 A;  1WNJ A;  1F7S A;  5KYY B;  1P8X A;  3CI5 G;  5KYX A;  1NLV G;  5KYU A;  1JHW A;  4Z94 G;  1C0G S;  3CJB G;  1C0F S;  1SVR A;  1M2V A;  5KYW B;  1M2V B;  1AK7 A;  5KYN A;  2FF3 A;  1NPH A;  1T2L A;  1V6F A;  3EH2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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