The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
52
|
sequence length |
234
|
structure length |
234
|
Chain Sequence |
ENPLKRLLVPGEEWEFEVTAFYRGRQVFQQTISCPEGLRLVGSEVGDRTLPGWPVTLPDPGMSLTDRGVMSYVRHVLSCLGGGLALWRAGQWLWAQRLGHCHTYWAVSEELLPNSGHGPDGEVPKDKEGGVFDLGPFIVDLITFTEGSGRSPRYALWFCVGESWPQDQPWTKRLVMVKVVPTCLRALVEMARVGGASSLENTVDLHISNSHPLSLTSDQYKAYLQDLVEGMDFQ
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Immune system
|
| molecule keywords |
Rotavirus NSP1 peptide
|
| publication title |
Structural basis for concerted recruitment and activation of IRF-3 by innate immune adaptor proteins.
pubmed doi rcsb |
| source organism |
Rotavirus a
|
| total genus |
52
|
| structure length |
234
|
| sequence length |
234
|
| chains with identical sequence |
C, E, G
|
| ec nomenclature | |
| pdb deposition date | 2016-04-18 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF10401 | IRF-3 | Interferon-regulatory factor 3 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Sandwich | Tumour Suppressor Smad4 | Tumour Suppressor Smad4 |
#chains in the Genus database with same CATH superfamily 1DD1 A; 1U7F B; 3A77 A; 5JER A; 1ZOQ A; 1U7V B; 3DIT A; 5JEK A; 1KHX A; 1MK2 A; 5JEO A; 1MR1 A; 1YGS A; 3GMJ A; 1KHU A; 1DEV A; 1QWT A; 3DSH A; 1G88 A; 1MJS A; 5JEM A; 5JEJ A; 1U7F A; 4R9P A; 5JEL A; 5C4V A; 5BVI A; 1U7V A; 1J2F A; #chains in the Genus database with same CATH topology 1DD1 A; 3VPY A; 3I6U A; 1Z0Z A; 5DHR A; 3GQS A; 5DHT A; 3VA4 A; 2BRF A; 3DIT A; 3POA A; 2CSW A; 2JPE A; 4EJQ A; 4A4Y A; 2I2B A; 1WLN A; 3UMZ A; 5DJO A; 4JON A; 5JEO A; 1MR1 A; 2JQL A; 1Z0S A; 2XXS A; 2LC1 A; 5EJH A; 3I0M A; 1YJM A; 4JIV D; 3HUE A; 3OUN A; 2I29 A; 1QU5 A; 1R21 A; 3UV0 A; 1LGP A; 2FEZ A; 5JEM A; 5EJG A; 1SUW A; 3UNM A; 5BVI A; 2A0T A; 2AN1 A; 4D9V A; 4WRR A; 3A77 A; 3ELV A; 5JER A; 3FM8 A; 5EJI A; 1KHX A; 4HAO A; 3V7U A; 4JIW D; 2P1R A; 1FHR A; 3V7Y A; 1UHT A; 1Z0U A; 1J4O A; 3S40 A; 5E50 A; 3UNN A; 1J4K A; 1KHU A; 2I1W A; 3V8N A; 3VA1 A; 3T5P A; 1U0R A; 1DEV A; 1QWT A; 1UJX A; 1U0T A; 1J4P A; 4H87 A; 5EJF A; 5JEL A; 5DHS A; 5C4V A; 4G2S A; 5DHP A; 1U7F B; 5DHQ A; 2BON A; 2KKL A; 1ZOQ A; 1K2M A; 2PIE A; 2QVL A; 5JEK A; 1Y3H A; 1K3J A; 1MK2 A; 4A0E A; 3UN0 A; 2QV7 A; 2JKD A; 3ELS A; 3VZC A; 1GXC A; 2I2C A; 2I2F A; 3GMJ A; 3VZD A; 1K3N A; 1LGQ A; 2AFF A; 2JQI A; 1FHQ A; 2JQJ A; 1YT5 A; 3HUF A; 1G3G A; 1YJ5 C; 3AFO A; 1Y3I A; 4KU0 D; 3I0N A; 1MJS A; 2G1L A; 5JEJ A; 1U7F A; 4R9P A; 4DY6 A; 2W3O A; 2KB4 A; 5DHU A; 2I2A A; 3V8P A; 1J2F A; 4EGX A; 2KFU A; 1WV3 A; 3V8Q A; 2EH0 A; 5A8I A; 1U7V B; 2JGR A; 3V7W A; 3V8M A; 4V24 A; 3MDB A; 1DMZ A; 1YGS A; 3HX1 A; 3I6W A; 1MZK A; 2FF4 A; 4QCJ A; 3VZB A; 1J4Q A; 2I2D A; 3PO8 A; 2Q5F A; 3UOT A; 3KT9 A; 3DSH A; 1J4L A; 1G88 A; 3PFN A; 4WER A; 3V80 A; 1G6G A; 1K3Q A; 1U7V A; 2KB3 A; 4L02 A; 1K2N A; 3V8R A; 2XT9 B; #chains in the Genus database with same CATH homology 1DD1 A; 3VPY A; 3I6U A; 3GQS A; 3VA4 A; 2BRF A; 3DIT A; 3POA A; 2CSW A; 2JPE A; 4EJQ A; 4A4Y A; 1WLN A; 3UMZ A; 5DJO A; 4JON A; 5JEO A; 1MR1 A; 2JQL A; 2XXS A; 2LC1 A; 3I0M A; 1YJM A; 4JIV D; 3HUE A; 3OUN A; 1QU5 A; 1R21 A; 3UV0 A; 1LGP A; 2FEZ A; 5JEM A; 3UNM A; 5BVI A; 2A0T A; 4D9V A; 4WRR A; 3A77 A; 3ELV A; 5JER A; 3FM8 A; 1KHX A; 4JIW D; 2P1R A; 1FHR A; 1UHT A; 1J4O A; 3S40 A; 5E50 A; 3UNN A; 1J4K A; 1KHU A; 3VA1 A; 3T5P A; 1DEV A; 1QWT A; 1UJX A; 1J4P A; 4H87 A; 5JEL A; 5C4V A; 4G2S A; 1U7F B; 2BON A; 2KKL A; 1ZOQ A; 1K2M A; 2PIE A; 2QVL A; 5JEK A; 1K3J A; 1MK2 A; 4A0E A; 3UN0 A; 2QV7 A; 2JKD A; 3ELS A; 3VZC A; 1GXC A; 1K3N A; 3GMJ A; 3VZD A; 1LGQ A; 2AFF A; 2JQI A; 1FHQ A; 2JQJ A; 3HUF A; 1G3G A; 1YJ5 C; 4KU0 D; 3I0N A; 1MJS A; 2G1L A; 5JEJ A; 1U7F A; 4R9P A; 2W3O A; 2KB4 A; 1J2F A; 4EGX A; 2KFU A; 1WV3 A; 5A8I A; 2EH0 A; 1U7V B; 2JGR A; 4V24 A; 3MDB A; 1DMZ A; 1YGS A; 3HX1 A; 3I6W A; 1MZK A; 2FF4 A; 4QCJ A; 3VZB A; 1J4Q A; 3PO8 A; 3UOT A; 3KT9 A; 3DSH A; 1J4L A; 1G88 A; 4WER A; 1G6G A; 1K3Q A; 1U7V A; 2KB3 A; 4L02 A; 1K2N A; 2XT9 B;
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