5K3QA

Rhesus macaques trim5alpha bbox2 domain
Total Genus 11
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
11
sequence length
43
structure length
43
Chain Sequence
VDHCARHGEKLLLFCQEDSKVICWLCERSQEHRGHHTFLMEEV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Ligase
molecule keywords Tripartite motif-containing protein 5,Tripartite motif-conta
publication title Crystal structure of the Trim5 alpha Bbox2 domain from rhesus macaques describes a plastic oligomerisation interface.
pubmed doi rcsb
source organism Macaca mulatta
total genus 11
structure length 43
sequence length 43
chains with identical sequence B, C, D
ec nomenclature ec 2.3.2.27: RING-type E3 ubiquitin transferase.
pdb deposition date 2016-05-19
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.40.200 Alpha Beta 2-Layer Sandwich Herpes Virus-1 Herpes Virus-1 5k3qA00
2YVRA 5K3QA 2CSVA 2EGMA 2DJAA 3DDTA 2JUNA 2D8UA 3Q1DA
chains in the Genus database with same CATH superfamily
2AN6A 2LAUA 2EXUA 3HTKC 1WGMA 2YT5A 5LCWB 1V87A 4V3KC 2JUNA 2YHNA 2KREA 4FIPA 2YQMA 2Y1NA 2DSMA 5KH3A 3U5PA 2H0DA 2FD4A 4IC2A 4OGEA 3FL2A 1XWHA 3FEHA 4AYCB 4WZ0A 3GV4A 2VPGA 5SVYA 3U5MA 2L7PA 1G25A 2KU3A 1WEUA 2C2VS 4WZ2A 5B75A 3I2DA 4I7CA 4W4UA 2Y1MA 4YADA 3L11A 2L5UA 2CSVA 1IYMA 3PUQA 2JMDA 3U5NA 1WIMA 2PNXA 2MNYA 3O37A 3SHBA 3MDBC 2MA6A 3SOWA 3M63A 3SOXA 5B76A 4ZQLA 3KQIA 4BBQA 4F52B 4C9ZA 4YABA 3EB6A 3LJUX 3GL6A 2YURA 5C13A 2LDRA 2KWOA 3LQJA 2OXQC 2K4DA 3FAOA 3KNVA 3EB5A 3C6WA 2DX8A 3M62A 4UP5A 2QJ0A 4YBTA 1MBMA 1WEEA 4F1PA 1JOCA 2ECIA 2XOYA 2K17A 2KWNA 2FFWA 2LRIC 4QQ4A 2CRWA 5G04B 3ZPVE 3JUEA 2JMJA 2YSMA 1JM7A 2MD8C 2YVRA 2ECVA 3O35A 3H7HA 1WEOA 2LN0A 5FB0A 4FK5A 5AIUA 3ZNIA 3O70A 2LGKA 2LXHC 4YC9A 5SVXA 3DQVR 2Y43A 2VNFA 2G43A 1WEQA 2HDPA 2KKYA 5FEYA 2B0OE 2JMIA 5J3XA 3FJUB 3O33A 3V43A 4L7XA 4QF3A 5C11A 2VJEB 4NN2A 2CT2A 1WESA 3DDTA 4AVXA 4X3GA 2UZGA 4I7DA 1WEVA 2LQ6A 5TRBA 4ZUXU 3RPGB 4O64A 4R7EA 3LVQE 2M85A 4BHWA 5H1TA 3O47A 1DVPA 1WE9A 2MNZA 5TBNA 2EGMA 4L58A 2EA6A 4AP4A 4A4BA 3LVRE 2MA5A 4TKPB 5SVIA 3RPGC 2RI7A 3LQIA 2OWAA 2VJFB 3RTRB 2ECJA 5LKTA 2G45A 5B78A 1F62A 2KWJA 2LXPC 3PHDA 2FSAA 2L75A 4GNDA 5LKZA 2KYUA 2XB1A 2G6QA 5DINA 4Q6FA 1CHCA 4S3OB 2P57A 2LV9A 4MVTA 2ECWA 1Z6UA 3ZYQA 2MKEA 4IC3A 3FANA 5LKXA 2C2LA 4Z0OA 4YAXA 4LK9A 2CKLB 2F42A 1DCQA 2YHOA 3O7AA 1WFKA 2KGIA 4FO9A 2RR4A 4YATA 1FP0A 3KDEC 2VPEA 3N9NA 4S3OC 4WZ3B 3KV5A 2ECGA 4A4CA 4V3LC 2CSZA 3N9PA 5DKAA 4AYCA 2VPDA 3DWDA 5FERA 3T6RA 2IQJA 4XI1A 4LJNA 3M7KA 2YU4A 4P5OB 1HYJA 2PUYA 3HCSA 3SOUA 2JM3A 2KWKA 3N9LA 2F6JA 1WILA 2M1RA 4LKAA 2H0DB 1X4IA 3DPLR 2QICA 2MT5A 4WA6A 3E2DA 3L1XA 2KKXA 4CA1A 1LDJB 3ASLA 4I7BA 4R8PK 3LQHA 5FB1A 4N3WA 2K1JA 2VPBA 5G05B 1WEWA 2QIZA 3Q1DA 5I3LA 5EYAF 3VK6A 3O34A 4GNGA 2E6RA 4Z0RA 1ZBDB 4GNFA 2FUUA 2RSDA 2XOCA 2YREA 4AUQB 2ECTA 5AITA 5B79A 2D8SA 4GNEA 5H9MA 3IHPA 5TDWA 1X4JA 4UP0A 2LGLA 1BORA 1LDKC 2HYED 4R2YA 3N9OA 4CCGX 4A0CD 5H1VA 5H1UA 3HCTA 3MHHA 2EODA 2YQLA 3O36A 5B77A 4QF2A 2YUCA 2NAAA 4FJCA 2E61A 4ZDTA 1JM7B 5TDRA 3MHSA 1MM2A 2XP0A 1WEPA 2LGVA 2IDAA 4O62A 4B7YC 4PPEA 1FBVA 2VJEA 2YSJA 1HYIA 4B86C 1E4UA 3KV6A 5K3QA 3C5KA 5B8DA 3QZVA 3T9KA 3U5OA 2M6MA 2YYRA 2XOZA 4YBSA 1X4UA 4H9DA 3SUBA 2K16A 3ZTGA 2CRRA 1VD4A 3HCUA 3ZPV1 2JRJA 2MIQA 2D8UA 2L43A 1WEMA 1WENA 2L0BA 5D1KB 5KH7A 3ZVYA 2VJFA 3ZVZB 2EGPA 5KH9A 5D1MB 1N87A 2KGGA 4GB0A 2CSYA 4YBMA 2MUMA 3LRQA 2F6NA 3N9MA 2KR4A 1MM3A 2ZETC 1VYXA 3PLWA 2M13A 4OGCA 2YW8A 5SVIB 5LKUA 2E6SA 2XEUA 2I50A 4PTBA 2CONA 2MD7B 2ECNA 2M3HA 4MSXA 2FUIA 2DJAA 4A49A 2L80A 1U6GB 4UI9B 3L1ZB 1T1HA 1Z60A 2KE1A 2KIZA 2LGGA 3LDYA 5TABA 2CKLA 2KFTA 5JG6A 1RMDA 4LLBA 2VP7A 3M99A 1Z2QA 5G0FA 5D1LB 3N9QA 4LADB 3T7LA 4N4FA 1K2FA 1VFYA 3NG2A 3FM8C 2BAYA 3PURA
chains in the Genus database with same CATH topology
3T9KA 3H7HA 2LAUA 4F1PA 2EXUA 5SVIA 2XP0A 2XOZA 2P57A 4Z0RA 2OWAA 4H9DA 3E2DA 5SVXA 3LJUX 2XOYA 4O62A 3LVQE 3SUBA 3LDYA 2CSVA 2KKXA 2MKEA 3PLWA 2FFWA 2M13A 2JUNA 2CRRA 3LVRE 4OGCA 4QQ4A 2KKYA 3DWDA 3O47A 5SVIB 2XOCA 2IQJA 2CRWA 4Z0OA 2B0OE 3JUEA 2YREA 3M7KA 2EGMA 2DJAA 3FJUB 2FD4A 2D8UA 2CONA 4OGEA 2YVRA 3MDBC 1DCQA 3FEHA 5K3QA 3FM8C 2RR4A 5SVYA 3KDEC 2L7PA 2JM3A 3DDTA 2E61A 3Q1DA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2YVR A;  5K3Q A;  2CSV A;  2EGM A;  2DJA A;  3DDT A;  2JUN A;  2D8U A;  3Q1D A; 
#chains in the Genus database with same CATH topology
 2AN6 A;  2LAU A;  2EXU A;  3HTK C;  1WGM A;  2YT5 A;  5LCW B;  1V87 A;  4V3K C;  2JUN A;  2YHN A;  2KRE A;  4FIP A;  2YQM A;  2Y1N A;  2DSM A;  5KH3 A;  3U5P A;  2H0D A;  2FD4 A;  4IC2 A;  4OGE A;  3FL2 A;  1XWH A;  3FEH A;  4AYC B;  4WZ0 A;  3GV4 A;  2VPG A;  5SVY A;  3U5M A;  2L7P A;  1G25 A;  2KU3 A;  1WEU A;  2C2V S;  4WZ2 A;  5B75 A;  3I2D A;  4I7C A;  4W4U A;  2Y1M A;  4YAD A;  3L11 A;  2L5U A;  2CSV A;  1IYM A;  3PUQ A;  2JMD A;  3U5N A;  1WIM A;  2PNX A;  2MNY A;  3O37 A;  3SHB A;  3MDB C;  2MA6 A;  3SOW A;  3M63 A;  3SOX A;  5B76 A;  4ZQL A;  3KQI A;  4BBQ A;  4F52 B;  4C9Z A;  4YAB A;  3EB6 A;  3LJU X;  3GL6 A;  2YUR A;  5C13 A;  2LDR A;  2KWO A;  3LQJ A;  2OXQ C;  2K4D A;  3FAO A;  3KNV A;  3EB5 A;  3C6W A;  2DX8 A;  3M62 A;  4UP5 A;  2QJ0 A;  4YBT A;  1MBM A;  1WEE A;  4F1P A;  1JOC A;  2ECI A;  2XOY A;  2K17 A;  2KWN A;  2FFW A;  2LRI C;  4QQ4 A;  2CRW A;  5G04 B;  3ZPV E;  3JUE A;  2JMJ A;  2YSM A;  1JM7 A;  2MD8 C;  2YVR A;  2ECV A;  3O35 A;  3H7H A;  1WEO A;  2LN0 A;  5FB0 A;  4FK5 A;  5AIU A;  3ZNI A;  3O70 A;  2LGK A;  2LXH C;  4YC9 A;  5SVX A;  3DQV R;  2Y43 A;  2VNF A;  2G43 A;  1WEQ A;  2HDP A;  2KKY A;  5FEY A;  2B0O E;  2JMI A;  5J3X A;  3FJU B;  3O33 A;  3V43 A;  4L7X A;  4QF3 A;  5C11 A;  2VJE B;  4NN2 A;  2CT2 A;  1WES A;  3DDT A;  4AVX A;  4X3G A;  2UZG A;  4I7D A;  1WEV A;  2LQ6 A;  5TRB A;  4ZUX U;  3RPG B;  4O64 A;  4R7E A;  3LVQ E;  2M85 A;  4BHW A;  5H1T A;  3O47 A;  1DVP A;  1WE9 A;  2MNZ A;  5TBN A;  2EGM A;  4L58 A;  2EA6 A;  4AP4 A;  4A4B A;  3LVR E;  2MA5 A;  4TKP B;  5SVI A;  3RPG C;  2RI7 A;  3LQI A;  2OWA A;  2VJF B;  3RTR B;  2ECJ A;  5LKT A;  2G45 A;  5B78 A;  1F62 A;  2KWJ A;  2LXP C;  3PHD A;  2FSA A;  2L75 A;  4GND A;  5LKZ A;  2KYU A;  2XB1 A;  2G6Q A;  5DIN A;  4Q6F A;  1CHC A;  4S3O B;  2P57 A;  2LV9 A;  4MVT A;  2ECW A;  1Z6U A;  3ZYQ A;  2MKE A;  4IC3 A;  3FAN A;  5LKX A;  2C2L A;  4Z0O A;  4YAX A;  4LK9 A;  2CKL B;  2F42 A;  1DCQ A;  2YHO A;  3O7A A;  1WFK A;  2KGI A;  4FO9 A;  2RR4 A;  4YAT A;  1FP0 A;  3KDE C;  2VPE A;  3N9N A;  4S3O C;  4WZ3 B;  3KV5 A;  2ECG A;  4A4C A;  4V3L C;  2CSZ A;  3N9P A;  5DKA A;  4AYC A;  2VPD A;  3DWD A;  5FER A;  3T6R A;  2IQJ A;  4XI1 A;  4LJN A;  3M7K A;  2YU4 A;  4P5O B;  1HYJ A;  2PUY A;  3HCS A;  3SOU A;  2JM3 A;  2KWK A;  3N9L A;  2F6J A;  1WIL A;  2M1R A;  4LKA A;  2H0D B;  1X4I A;  3DPL R;  2QIC A;  2MT5 A;  4WA6 A;  3E2D A;  3L1X A;  2KKX A;  4CA1 A;  1LDJ B;  3ASL A;  4I7B A;  4R8P K;  3LQH A;  5FB1 A;  4N3W A;  2K1J A;  2VPB A;  5G05 B;  1WEW A;  2QIZ A;  3Q1D A;  5I3L A;  5EYA F;  3VK6 A;  3O34 A;  4GNG A;  2E6R A;  4Z0R A;  1ZBD B;  4GNF A;  2FUU A;  2RSD A;  2XOC A;  2YRE A;  4AUQ B;  2ECT A;  5AIT A;  5B79 A;  2D8S A;  4GNE A;  5H9M A;  3IHP A;  5TDW A;  1X4J A;  4UP0 A;  2LGL A;  1BOR A;  1LDK C;  2HYE D;  4R2Y A;  3N9O A;  4CCG X;  4A0C D;  5H1V A;  5H1U A;  3HCT A;  3MHH A;  2EOD A;  2YQL A;  3O36 A;  5B77 A;  4QF2 A;  2YUC A;  2NAA A;  4FJC A;  2E61 A;  4ZDT A;  1JM7 B;  5TDR A;  3MHS A;  1MM2 A;  2XP0 A;  1WEP A;  2LGV A;  2IDA A;  4O62 A;  4B7Y C;  4PPE A;  1FBV A;  2VJE A;  2YSJ A;  1HYI A;  4B86 C;  1E4U A;  3KV6 A;  5K3Q A;  3C5K A;  5B8D A;  3QZV A;  3T9K A;  3U5O A;  2M6M A;  2YYR A;  2XOZ A;  4YBS A;  1X4U A;  4H9D A;  3SUB A;  2K16 A;  3ZTG A;  2CRR A;  1VD4 A;  3HCU A;  3ZPV 1;  2JRJ A;  2MIQ A;  2D8U A;  2L43 A;  1WEM A;  1WEN A;  2L0B A;  5D1K B;  5KH7 A;  3ZVY A;  2VJF A;  3ZVZ B;  2EGP A;  5KH9 A;  5D1M B;  1N87 A;  2KGG A;  4GB0 A;  2CSY A;  4YBM A;  2MUM A;  3LRQ A;  2F6N A;  3N9M A;  2KR4 A;  1MM3 A;  2ZET C;  1VYX A;  3PLW A;  2M13 A;  4OGC A;  2YW8 A;  5SVI B;  5LKU A;  2E6S A;  2XEU A;  2I50 A;  4PTB A;  2CON A;  2MD7 B;  2ECN A;  2M3H A;  4MSX A;  2FUI A;  2DJA A;  4A49 A;  2L80 A;  1U6G B;  4UI9 B;  3L1Z B;  1T1H A;  1Z60 A;  2KE1 A;  2KIZ A;  2LGG A;  3LDY A;  5TAB A;  2CKL A;  2KFT A;  5JG6 A;  1RMD A;  4LLB A;  2VP7 A;  3M99 A;  1Z2Q A;  5G0F A;  5D1L B;  3N9Q A;  4LAD B;  3T7L A;  4N4F A;  1K2F A;  1VFY A;  3NG2 A;  3FM8 C;  2BAY A;  3PUR A; 
#chains in the Genus database with same CATH homology
 3T9K A;  3H7H A;  2LAU A;  4F1P A;  2EXU A;  5SVI A;  2XP0 A;  2XOZ A;  2P57 A;  4Z0R A;  2OWA A;  4H9D A;  3E2D A;  5SVX A;  3LJU X;  2XOY A;  4O62 A;  3LVQ E;  3SUB A;  3LDY A;  2CSV A;  2KKX A;  2MKE A;  3PLW A;  2FFW A;  2M13 A;  2JUN A;  2CRR A;  3LVR E;  4OGC A;  4QQ4 A;  2KKY A;  3DWD A;  3O47 A;  5SVI B;  2XOC A;  2IQJ A;  2CRW A;  4Z0O A;  2B0O E;  3JUE A;  2YRE A;  3M7K A;  2EGM A;  2DJA A;  3FJU B;  2FD4 A;  2D8U A;  2CON A;  4OGE A;  2YVR A;  3MDB C;  1DCQ A;  3FEH A;  5K3Q A;  3FM8 C;  2RR4 A;  5SVY A;  3KDE C;  2L7P A;  2JM3 A;  3DDT A;  2E61 A;  3Q1D A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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