5K4PA

Catalytic domain of mcr-1 phosphoethanolamine transferase
Total Genus 125
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
125
Knots found
sequence length
324
structure length
323
Chain Sequence
DTIYHAKDAVQATKPDMRKPRLVVFVVGETARADHVSFNGYERDTFPQLAKIDGVTNFSNVTSCGTSAYSVPCMFSYLGADEYDVDTAKYQENVLDTLDRLGVSILWRDNNSDSKGVMDKLPKAQFADYKSATNNAICNTNPYNECRDVGMLVGLDDFVAANNGKDMLIMLHQMGNHGPAYFKRYDEKFAKFTPVCEGNELAKCEHQSLINAYDNALLATDDFIAQSIQWLQTHSNAYDVSMLYVSDHGESLGENGVYLHGMPNAFAPKEQRSVPAFFWTDKQTGITPMATDTVLTHDAITPTLLKLFDVTADKVKDRTAFIR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords Probable phosphatidylethanolamine transferase Mcr-1
publication title Structure of the catalytic domain of the colistin resistance enzyme MCR-1.
pubmed doi rcsb
total genus 125
structure length 323
sequence length 324
other databases KnotProt 2.0: S +31
ec nomenclature ec 2.7.-.-:
pdb deposition date 2016-05-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00884 Sulfatase Sulfatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 5k4pA00
2W5XA 5DLTA 3NKOA 2GLQA 3UN5A 3T02A 4ZG7A 2VQRA 4KAVA 3IGZB 3A52A 1ZEFA 4LR8A 5EGEA 4FDIA 1KHNA 1EW9A 3TX0A 5IJSA 5L0KA 4B56A 3M8WA 1K7HA 5LRMA 4GTXA 4QAXA 5INHA 2IUCA 5C66A 4N7TA 2GSUA 3M8YA 4KM4A 1URAA 3MK1A 4CXUA 3BDFA 1KHKA 1ZEDA 4UORA 1KHJA 4UPIA 1EJJA 5IJQA 1E33P 1KH7A 2IFYA 4LRAA 4CYRA 1AJAA 3TG0A 4LRBA 1KHLA 3NVLA 1ED8A 2ANHA 4FDJA 1B8JA 5HRTA 3MK2A 1AJBA 2GA3A 4GTYA 1ANJA 5L0EA 1ELYA 3WAXA 2W5SA 3SZYA 3WBHA 3NKRA 4TN0A 1FSUA 3E2DA 1Y7AA 2W5VA 2XR9A 3DYCA 1AUKA 3M8ZA 4UPKA 4UPLA 1EQJA 4CXSA 3M7VA 1EW2A 3OT9A 3IDDA 1EW8A 4YR1A 1Y6VA 3Q3QA 4KAYA 4MIVA 4NWJA 3UNYA 4UOPA 5GRRA 1ALKA 3UO0A 3UN3A 1EI6A 2W5TA 1O98A 1URBA 4LR2A 3WAWA 3BDHA 1ELXA 5GOVA 2W8DA 4MHXA 1ALHA 1SHQA 2G9YA 1KH5A 3B5QA 3DPCA 2W5WA 2GSOA 5EGHA 1KH9A 5KXAA 4ZG6A 1AJDA 5DLVA 4LQYA 3BDGB 3NKPA 3WAVA 3NKQA 4KJDA 2GSNA 4LRDA 5L0BA 4LRFA 4UPHA 4LR7A 4NWXA 3ED4A 1AJCA 3MK0A 4LREA 1HJKA 2ZKTA 5K4PA 4ZG9A 5LQQA 2D1GA 1KH4A 4LRCA 4MY4A 3UN2A 1SHNA 2W5QA 2X98A 5TJ3A 3WAYA 3TWZA 2QZUA 4LR9A 1E3CP 3NKMA 1ZEBA 5DLWA 3SZZA 2W5RA 1P49A 3T01A 1E1ZP 1HQAA 1N2LA 3BDGA 3LXQA 5LRNA 1ALJA 4CXKA 1N2KA 3KD8A 4KJGA 4UOOA 4GTWA 4ZGAA 3NKNA 3T00A 1E2SP 1O99A 5LIAA 1ELZA 3IGYB 5AJ9A 1ANIA 2W8SA 3CMRA 1ED9A 4GTZA 2IUCB 2RH6A 2XRGA 4CYSA 1HDHA 1ALIA
chains in the Genus database with same CATH superfamily
2W5XA 5DLTA 3NKOA 2GLQA 3UN5A 3T02A 4ZG7A 2VQRA 4KAVA 3IGZB 3A52A 1ZEFA 4LR8A 5EGEA 4FDIA 1KHNA 1EW9A 3TX0A 5IJSA 5L0KA 4B56A 3M8WA 1K7HA 5LRMA 4GTXA 4QAXA 5INHA 2IUCA 5C66A 4N7TA 2GSUA 3M8YA 4KM4A 1URAA 3MK1A 4CXUA 3BDFA 1KHKA 1ZEDA 4UORA 1KHJA 4UPIA 1EJJA 5IJQA 1E33P 1KH7A 2IFYA 4LRAA 4CYRA 1AJAA 3TG0A 4LRBA 1KHLA 3NVLA 1ED8A 2ANHA 4FDJA 1B8JA 5HRTA 3MK2A 1AJBA 2GA3A 4GTYA 1ANJA 5L0EA 1ELYA 3WAXA 2W5SA 3SZYA 3WBHA 3NKRA 4TN0A 1FSUA 3E2DA 1Y7AA 2W5VA 2XR9A 3DYCA 1AUKA 3M8ZA 4UPKA 4UPLA 1EQJA 4CXSA 3M7VA 1EW2A 3OT9A 3IDDA 1EW8A 4YR1A 1Y6VA 3Q3QA 4KAYA 4MIVA 4NWJA 3UNYA 4UOPA 5GRRA 1ALKA 3UO0A 3UN3A 1EI6A 2W5TA 1O98A 1URBA 4LR2A 3WAWA 3BDHA 1ELXA 5GOVA 2W8DA 4MHXA 1ALHA 1SHQA 2G9YA 1KH5A 3B5QA 3DPCA 2W5WA 2GSOA 5EGHA 1KH9A 5KXAA 4ZG6A 1AJDA 5DLVA 4LQYA 3BDGB 3NKPA 3WAVA 3NKQA 4KJDA 2GSNA 4LRDA 5L0BA 4LRFA 4UPHA 4LR7A 4NWXA 3ED4A 1AJCA 3MK0A 4LREA 1HJKA 2ZKTA 5K4PA 4ZG9A 5LQQA 2D1GA 1KH4A 4LRCA 4MY4A 3UN2A 1SHNA 2W5QA 2X98A 5TJ3A 3WAYA 3TWZA 2QZUA 4LR9A 1E3CP 3NKMA 1ZEBA 5DLWA 3SZZA 2W5RA 1P49A 3T01A 1E1ZP 1HQAA 1N2LA 3BDGA 3LXQA 5LRNA 1ALJA 4CXKA 1N2KA 3KD8A 4KJGA 4UOOA 4GTWA 4ZGAA 3NKNA 3T00A 1E2SP 1O99A 5LIAA 1ELZA 3IGYB 5AJ9A 1ANIA 2W8SA 3CMRA 1ED9A 4GTZA 2IUCB 2RH6A 2XRGA 4CYSA 1HDHA 1ALIA
chains in the Genus database with same CATH topology
2W5XA 5DLTA 3NKOA 2GLQA 3UN5A 3T02A 4ZG7A 2VQRA 4KAVA 3IGZB 3A52A 1ZEFA 4LR8A 5EGEA 4FDIA 1KHNA 1EW9A 3TX0A 5IJSA 5L0KA 4B56A 3M8WA 1K7HA 5LRMA 4GTXA 4QAXA 5INHA 2IUCA 5C66A 4N7TA 2GSUA 3M8YA 4KM4A 1URAA 3MK1A 4CXUA 3BDFA 1KHKA 1ZEDA 4UORA 1KHJA 4UPIA 1EJJA 5IJQA 1E33P 1KH7A 2IFYA 4LRAA 4CYRA 1AJAA 3TG0A 4LRBA 1KHLA 3NVLA 1ED8A 2ANHA 4FDJA 1B8JA 5HRTA 3MK2A 1AJBA 2GA3A 4GTYA 1ANJA 5L0EA 1ELYA 3WAXA 2W5SA 3SZYA 3WBHA 3NKRA 4TN0A 1FSUA 3E2DA 1Y7AA 2W5VA 2XR9A 3DYCA 1AUKA 3M8ZA 4UPKA 4UPLA 1EQJA 4CXSA 3M7VA 1EW2A 3OT9A 3IDDA 1EW8A 4YR1A 1Y6VA 3Q3QA 4KAYA 4MIVA 4NWJA 3UNYA 4UOPA 5GRRA 1ALKA 3UO0A 3UN3A 1EI6A 2W5TA 1O98A 1URBA 4LR2A 3WAWA 3BDHA 1ELXA 5GOVA 2W8DA 4MHXA 1ALHA 1SHQA 2G9YA 1KH5A 3B5QA 3DPCA 2W5WA 2GSOA 5EGHA 1KH9A 5KXAA 4ZG6A 1AJDA 5DLVA 4LQYA 3BDGB 3NKPA 3WAVA 3NKQA 4KJDA 2GSNA 4LRDA 5L0BA 4LRFA 4UPHA 4LR7A 4NWXA 3ED4A 1AJCA 3MK0A 4LREA 1HJKA 2ZKTA 5K4PA 4ZG9A 5LQQA 2D1GA 1KH4A 4LRCA 4MY4A 3UN2A 1SHNA 2W5QA 2X98A 5TJ3A 3WAYA 3TWZA 2QZUA 4LR9A 1E3CP 3NKMA 1ZEBA 5DLWA 3SZZA 2W5RA 1P49A 3T01A 1E1ZP 1HQAA 1N2LA 3BDGA 3LXQA 5LRNA 1ALJA 4CXKA 1N2KA 3KD8A 4KJGA 4UOOA 4GTWA 4ZGAA 3NKNA 3T00A 1E2SP 1O99A 5LIAA 1ELZA 3IGYB 5AJ9A 1ANIA 2W8SA 3CMRA 1ED9A 4GTZA 2IUCB 2RH6A 2XRGA 4CYSA 1HDHA 1ALIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2W5X A;  5DLT A;  3NKO A;  2GLQ A;  3UN5 A;  3T02 A;  4ZG7 A;  2VQR A;  4KAV A;  3IGZ B;  3A52 A;  1ZEF A;  4LR8 A;  5EGE A;  4FDI A;  1KHN A;  1EW9 A;  3TX0 A;  5IJS A;  5L0K A;  4B56 A;  3M8W A;  1K7H A;  5LRM A;  4GTX A;  4QAX A;  5INH A;  2IUC A;  5C66 A;  4N7T A;  2GSU A;  3M8Y A;  4KM4 A;  1URA A;  3MK1 A;  4CXU A;  3BDF A;  1KHK A;  1ZED A;  4UOR A;  1KHJ A;  4UPI A;  1EJJ A;  5IJQ A;  1E33 P;  1KH7 A;  2IFY A;  4LRA A;  4CYR A;  1AJA A;  3TG0 A;  4LRB A;  1KHL A;  3NVL A;  1ED8 A;  2ANH A;  4FDJ A;  1B8J A;  5HRT A;  3MK2 A;  1AJB A;  2GA3 A;  4GTY A;  1ANJ A;  5L0E A;  1ELY A;  3WAX A;  2W5S A;  3SZY A;  3WBH A;  3NKR A;  4TN0 A;  1FSU A;  3E2D A;  1Y7A A;  2W5V A;  2XR9 A;  3DYC A;  1AUK A;  3M8Z A;  4UPK A;  4UPL A;  1EQJ A;  4CXS A;  3M7V A;  1EW2 A;  3OT9 A;  3IDD A;  1EW8 A;  4YR1 A;  1Y6V A;  3Q3Q A;  4KAY A;  4MIV A;  4NWJ A;  3UNY A;  4UOP A;  5GRR A;  1ALK A;  3UO0 A;  3UN3 A;  1EI6 A;  2W5T A;  1O98 A;  1URB A;  4LR2 A;  3WAW A;  3BDH A;  1ELX A;  5GOV A;  2W8D A;  4MHX A;  1ALH A;  1SHQ A;  2G9Y A;  1KH5 A;  3B5Q A;  3DPC A;  2W5W A;  2GSO A;  5EGH A;  1KH9 A;  5KXA A;  4ZG6 A;  1AJD A;  5DLV A;  4LQY A;  3BDG B;  3NKP A;  3WAV A;  3NKQ A;  4KJD A;  2GSN A;  4LRD A;  5L0B A;  4LRF A;  4UPH A;  4LR7 A;  4NWX A;  3ED4 A;  1AJC A;  3MK0 A;  4LRE A;  1HJK A;  2ZKT A;  5K4P A;  4ZG9 A;  5LQQ A;  2D1G A;  1KH4 A;  4LRC A;  4MY4 A;  3UN2 A;  1SHN A;  2W5Q A;  2X98 A;  5TJ3 A;  3WAY A;  3TWZ A;  2QZU A;  4LR9 A;  1E3C P;  3NKM A;  1ZEB A;  5DLW A;  3SZZ A;  2W5R A;  1P49 A;  3T01 A;  1E1Z P;  1HQA A;  1N2L A;  3BDG A;  3LXQ A;  5LRN A;  1ALJ A;  4CXK A;  1N2K A;  3KD8 A;  4KJG A;  4UOO A;  4GTW A;  4ZGA A;  3NKN A;  3T00 A;  1E2S P;  1O99 A;  5LIA A;  1ELZ A;  3IGY B;  5AJ9 A;  1ANI A;  2W8S A;  3CMR A;  1ED9 A;  4GTZ A;  2IUC B;  2RH6 A;  2XRG A;  4CYS A;  1HDH A;  1ALI A; 
#chains in the Genus database with same CATH topology
 2W5X A;  5DLT A;  3NKO A;  2GLQ A;  3UN5 A;  3T02 A;  4ZG7 A;  2VQR A;  4KAV A;  3IGZ B;  3A52 A;  1ZEF A;  4LR8 A;  5EGE A;  4FDI A;  1KHN A;  1EW9 A;  3TX0 A;  5IJS A;  5L0K A;  4B56 A;  3M8W A;  1K7H A;  5LRM A;  4GTX A;  4QAX A;  5INH A;  2IUC A;  5C66 A;  4N7T A;  2GSU A;  3M8Y A;  4KM4 A;  1URA A;  3MK1 A;  4CXU A;  3BDF A;  1KHK A;  1ZED A;  4UOR A;  1KHJ A;  4UPI A;  1EJJ A;  5IJQ A;  1E33 P;  1KH7 A;  2IFY A;  4LRA A;  4CYR A;  1AJA A;  3TG0 A;  4LRB A;  1KHL A;  3NVL A;  1ED8 A;  2ANH A;  4FDJ A;  1B8J A;  5HRT A;  3MK2 A;  1AJB A;  2GA3 A;  4GTY A;  1ANJ A;  5L0E A;  1ELY A;  3WAX A;  2W5S A;  3SZY A;  3WBH A;  3NKR A;  4TN0 A;  1FSU A;  3E2D A;  1Y7A A;  2W5V A;  2XR9 A;  3DYC A;  1AUK A;  3M8Z A;  4UPK A;  4UPL A;  1EQJ A;  4CXS A;  3M7V A;  1EW2 A;  3OT9 A;  3IDD A;  1EW8 A;  4YR1 A;  1Y6V A;  3Q3Q A;  4KAY A;  4MIV A;  4NWJ A;  3UNY A;  4UOP A;  5GRR A;  1ALK A;  3UO0 A;  3UN3 A;  1EI6 A;  2W5T A;  1O98 A;  1URB A;  4LR2 A;  3WAW A;  3BDH A;  1ELX A;  5GOV A;  2W8D A;  4MHX A;  1ALH A;  1SHQ A;  2G9Y A;  1KH5 A;  3B5Q A;  3DPC A;  2W5W A;  2GSO A;  5EGH A;  1KH9 A;  5KXA A;  4ZG6 A;  1AJD A;  5DLV A;  4LQY A;  3BDG B;  3NKP A;  3WAV A;  3NKQ A;  4KJD A;  2GSN A;  4LRD A;  5L0B A;  4LRF A;  4UPH A;  4LR7 A;  4NWX A;  3ED4 A;  1AJC A;  3MK0 A;  4LRE A;  1HJK A;  2ZKT A;  5K4P A;  4ZG9 A;  5LQQ A;  2D1G A;  1KH4 A;  4LRC A;  4MY4 A;  3UN2 A;  1SHN A;  2W5Q A;  2X98 A;  5TJ3 A;  3WAY A;  3TWZ A;  2QZU A;  4LR9 A;  1E3C P;  3NKM A;  1ZEB A;  5DLW A;  3SZZ A;  2W5R A;  1P49 A;  3T01 A;  1E1Z P;  1HQA A;  1N2L A;  3BDG A;  3LXQ A;  5LRN A;  1ALJ A;  4CXK A;  1N2K A;  3KD8 A;  4KJG A;  4UOO A;  4GTW A;  4ZGA A;  3NKN A;  3T00 A;  1E2S P;  1O99 A;  5LIA A;  1ELZ A;  3IGY B;  5AJ9 A;  1ANI A;  2W8S A;  3CMR A;  1ED9 A;  4GTZ A;  2IUC B;  2RH6 A;  2XRG A;  4CYS A;  1HDH A;  1ALI A; 
#chains in the Genus database with same CATH homology
 2W5X A;  5DLT A;  3NKO A;  2GLQ A;  3UN5 A;  3T02 A;  4ZG7 A;  2VQR A;  4KAV A;  3IGZ B;  3A52 A;  1ZEF A;  4LR8 A;  5EGE A;  4FDI A;  1KHN A;  1EW9 A;  3TX0 A;  5IJS A;  5L0K A;  4B56 A;  3M8W A;  1K7H A;  5LRM A;  4GTX A;  4QAX A;  5INH A;  2IUC A;  5C66 A;  4N7T A;  2GSU A;  3M8Y A;  4KM4 A;  1URA A;  3MK1 A;  4CXU A;  3BDF A;  1KHK A;  1ZED A;  4UOR A;  1KHJ A;  4UPI A;  1EJJ A;  5IJQ A;  1E33 P;  1KH7 A;  2IFY A;  4LRA A;  4CYR A;  1AJA A;  3TG0 A;  4LRB A;  1KHL A;  3NVL A;  1ED8 A;  2ANH A;  4FDJ A;  1B8J A;  5HRT A;  3MK2 A;  1AJB A;  2GA3 A;  4GTY A;  1ANJ A;  5L0E A;  1ELY A;  3WAX A;  2W5S A;  3SZY A;  3WBH A;  3NKR A;  4TN0 A;  1FSU A;  3E2D A;  1Y7A A;  2W5V A;  2XR9 A;  3DYC A;  1AUK A;  3M8Z A;  4UPK A;  4UPL A;  1EQJ A;  4CXS A;  3M7V A;  1EW2 A;  3OT9 A;  3IDD A;  1EW8 A;  4YR1 A;  1Y6V A;  3Q3Q A;  4KAY A;  4MIV A;  4NWJ A;  3UNY A;  4UOP A;  5GRR A;  1ALK A;  3UO0 A;  3UN3 A;  1EI6 A;  2W5T A;  1O98 A;  1URB A;  4LR2 A;  3WAW A;  3BDH A;  1ELX A;  5GOV A;  2W8D A;  4MHX A;  1ALH A;  1SHQ A;  2G9Y A;  1KH5 A;  3B5Q A;  3DPC A;  2W5W A;  2GSO A;  5EGH A;  1KH9 A;  5KXA A;  4ZG6 A;  1AJD A;  5DLV A;  4LQY A;  3BDG B;  3NKP A;  3WAV A;  3NKQ A;  4KJD A;  2GSN A;  4LRD A;  5L0B A;  4LRF A;  4UPH A;  4LR7 A;  4NWX A;  3ED4 A;  1AJC A;  3MK0 A;  4LRE A;  1HJK A;  2ZKT A;  5K4P A;  4ZG9 A;  5LQQ A;  2D1G A;  1KH4 A;  4LRC A;  4MY4 A;  3UN2 A;  1SHN A;  2W5Q A;  2X98 A;  5TJ3 A;  3WAY A;  3TWZ A;  2QZU A;  4LR9 A;  1E3C P;  3NKM A;  1ZEB A;  5DLW A;  3SZZ A;  2W5R A;  1P49 A;  3T01 A;  1E1Z P;  1HQA A;  1N2L A;  3BDG A;  3LXQ A;  5LRN A;  1ALJ A;  4CXK A;  1N2K A;  3KD8 A;  4KJG A;  4UOO A;  4GTW A;  4ZGA A;  3NKN A;  3T00 A;  1E2S P;  1O99 A;  5LIA A;  1ELZ A;  3IGY B;  5AJ9 A;  1ANI A;  2W8S A;  3CMR A;  1ED9 A;  4GTZ A;  2IUC B;  2RH6 A;  2XRG A;  4CYS A;  1HDH A;  1ALI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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