5T5MD

Tungsten-containing formylmethanofuran dehydrogenase from methanothermobacter wolfeii, trigonal form at 2.5 a.
Total Genus 31
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
31
sequence length
126
structure length
126
Chain Sequence
MRVILNTGRTIWQGQAIESGKDLKMYVDAAAIIQMNPEMMKQLGIAEGDNVKVISEYGDVVVKAVEAKEPLPEGMVYIPMGPWANRVIRPYTDSTATPSFKNIPVEIIPTDEEVLDMPTLMKVYGK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Tungsten formylmethanofuran dehydrogenase subunit fwdA
publication title The methanogenic CO2 reducing-and-fixing enzyme is bifunctional and contains 46 [4Fe-4S] clusters.
pubmed doi rcsb
total genus 31
structure length 126
sequence length 126
ec nomenclature
pdb deposition date 2016-08-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF01568 Molydop_binding Molydopterin dinucleotide binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 5t5mD00
2JIOA 4AYBA 2V45A 3HKZA 4CRZA 1QCSA 1PQHA 3GTGA 5FTLA 2WB1A 4KO8A 3QC8A 4AONB 3QQ7A 2NYAA 2JA5A 3CF2A 3GTMA 4KLNA 1E18A 5DYGA 2JIPA 1KQGA 5DYIA 1G8JA 2EEOB 5FTMA 2VPWA 2VPYA 4AOKB 1E5VA 4CRYG 2IV2X 2VPZA 1R7RA 4DMRA 1IW7D 2R7ZA 1CR5A 3QWZA 2E2IA 3FKIA 2NAPA 2PMZA 2JA6A 1EU1A 2YU9A 1Q16A 4AZDA 3H0GA 1I50A 5T5MD 3HU3A 5B6CA 2JA7A 3PLXB 2NVXA 1R9TA 1TWFA 1FDIA 2JIRA 4RV0A 3OUGA 1R27A 1WCMA 2Y0SA 2R92A 1TWAA 1PT0A 2C45A 3CQZA 4GA5A 3TM7B 4D7ZB 1DMRA 1TWGA 4QIWA 5EPPA 1PYUB 5FTNA 4KODA 1VC3B 3IR7A 1WLFA 3O5AA 2B63A 2VPXA 3IR6A 1AA6A 4CS0A 2PJHB 1E61A 2WAQA 3GTPA 2DMRA 1Y4ZA 2E7ZA 5FTJA 1PT1A 1OGYA 5GLFA 1TWCA 4KDIA 2KI8A 1QDNA 3HU2A 5T5ID 2JIQA 4C2MA 1UHDA 3IR5A 4AAYA 1H0HA 1CZ5A 1Y5IA 1AW8B 1FDOA 1TMOA 5C18A 2VUMA 4KDLA 1SFOA 1H5NA 1TWHA 2R93A 3GTOA 3GTKA 1DMSA 2NVYA 4GA6A 2E2HA 1UHEA 2JIMA 1PYQA 1G8KA 1I3QA 2V3VA 1Y1WA 3GTQA 3GTLA 1E60A 1PQFA 1Y1VA 3ML1A 3GTJA 1SIWA 5FTKA 1PPYA 5C1BA 3DMRA 3QQ8A 1K83A 1S3SA 1KQFA 1CZ4A 1YLEA 3HU1A 3TIWA 1E32A 1PQEA
chains in the Genus database with same CATH superfamily
2PNWA 2JIOA 4AVRA 4AYBA 3X2JA 2V45A 3X2NA 3HKZA 1N10A 2HCZX 4CRZA 1OA9A 1QCSA 1PQHA 2ENGA 2G5DA 3GTGA 3X2IA 5FTLA 2WB1A 4KO8A 3QC8A 4JJOA 2KQAA 3M3GA 3QQ7A 4AONB 2NYAA 2JA5A 3X2PA 4NOHA 3CF2A 3GTMA 1WC2A 2PICA 4KLNA 1E18A 5DYGA 2BE5D 2JIPA 1KQGA 2A68D 5DYIA 1G8JA 3SULA 3X2KA 2EEOB 2GAEA 5FTMA 2VPWA 2VPYA 4JP6A 4AOKB 2CW0D 1E5VA 2A6ED 4CRYG 2IV2X 2VPZA 3X2OA 2YUJA 3X2HA 1R7RA 4DMRA 1IW7D 2R7ZA 1CR5A 3QWZA 2E2IA 4FFTA 3FKIA 2NAPA 2PMZA 2JA6A 1EU1A 3SUMA 2YU9A 1Q16A 4AZDA 3H0GA 1I50A 5T5MD 3HU3A 5B6CA 2JA7A 3PLXB 2NVXA 1R9TA 1TWFA 1FDIA 2A6HD 2JIRA 4ENGA 4RV0A 3OUGA 1R27A 1WCMA 2Y0SA 2R92A 1TWAA 4L48A 3SUKA 1PT0A 2C45A 3CQZA 4GA5A 3TM7B 4D7ZB 5GLXA 3SUJA 1DMRA 3CZBA 1L8FA 1TWGA 4QIWA 5EPPA 1PYUB 5FTNA 4KODA 1VC3B 3IR7A 1WLFA 3O5AA 2B63A 2VPXA 3IR6A 4ZM7A 1AA6A 4CS0A 2PJHB 1E61A 2WAQA 3GTPA 2DMRA 1Y4ZA 2AE0X 2E7ZA 4FG4A 1PT1A 5FTJA 3ENGA 1OGYA 5GLFA 1TWCA 2PJJA 4KDIA 2G6GA 2KI8A 1QDNA 3X2LA 3HU2A 5T5ID 2JIQA 4C2MA 1UHDA 3IR5A 2BH0A 4AAYA 1H0HA 1CZ5A 2A69D 1Y5IA 1ZYRD 1AW8B 1FDOA 1TMOA 3X2MA 5C18A 2O5JD 2VUMA 4KDLA 4JP7A 5H4UA 1SFOA 1H5NA 1TWHA 5GM9A 2R93A 1YNND 4FERA 1HD5A 3GTOA 3GTKA 1DMSA 1SMYD 2NVYA 4GA6A 2E2HA 4JS7A 1UHEA 2JIMA 1PYQA 4JCWA 1BW4A 1G8KA 2PI8A 1I3QA 3X2GA 2V3VA 1Y1WA 3GTQA 3GTLA 1E60A 1PQFA 1ZC1A 1Y1VA 3ML1A 3GTJA 1SIWA 5FTKA 1PPYA 3D30A 5C1BA 3DMRA 3QQ8A 1K83A 1S3SA 1KQFA 1CZ4A 1YLEA 1OA7A 3HU1A 5GLYA 3TIWA 1BW3A 1E32A 1YNJD 4FG2A 1PQEA
chains in the Genus database with same CATH topology
2PNWA 2JIOA 4AYBA 2V45A 3HKZA 4CRZA 1QCSA 1PQHA 2G5DA 3GTGA 5FTLA 2WB1A 4KO8A 3QC8A 4AONB 3QQ7A 2NYAA 2JA5A 4NOHA 3CF2A 3GTMA 2PICA 4KLNA 1E18A 5DYGA 2JIPA 2BE5D 1KQGA 2A68D 5DYIA 1G8JA 2EEOB 2GAEA 5FTMA 2VPWA 2VPYA 4AOKB 2CW0D 1E5VA 2A6ED 4CRYG 2IV2X 2VPZA 2YUJA 1R7RA 4DMRA 1IW7D 2R7ZA 1CR5A 3QWZA 2E2IA 3FKIA 2NAPA 2PMZA 2JA6A 1EU1A 2YU9A 1Q16A 4AZDA 3H0GA 1I50A 5T5MD 3HU3A 5B6CA 2JA7A 3PLXB 2NVXA 1R9TA 1TWFA 1FDIA 2A6HD 2JIRA 4RV0A 3OUGA 1R27A 1WCMA 2Y0SA 2R92A 1TWAA 1PT0A 2C45A 3CQZA 4GA5A 3TM7B 4D7ZB 1DMRA 3CZBA 1TWGA 4QIWA 5EPPA 1PYUB 5FTNA 4KODA 1VC3B 3IR7A 1WLFA 3O5AA 2B63A 2VPXA 3IR6A 1AA6A 4CS0A 2PJHB 1E61A 2WAQA 3GTPA 2DMRA 1Y4ZA 2AE0X 2E7ZA 5FTJA 1PT1A 1OGYA 5GLFA 1TWCA 2PJJA 4KDIA 2G6GA 2KI8A 1QDNA 3HU2A 5T5ID 2JIQA 4C2MA 1UHDA 3IR5A 4AAYA 1H0HA 1CZ5A 2A69D 1Y5IA 1ZYRD 1AW8B 1FDOA 1TMOA 5C18A 2O5JD 2VUMA 4KDLA 1SFOA 1H5NA 1TWHA 2R93A 1YNND 3GTOA 3GTKA 1DMSA 1SMYD 2NVYA 4GA6A 2E2HA 1UHEA 2JIMA 1PYQA 1G8KA 2PI8A 1I3QA 2V3VA 1Y1WA 3GTQA 3GTLA 1E60A 1PQFA 1ZC1A 1Y1VA 3ML1A 3GTJA 1SIWA 5FTKA 1PPYA 5C1BA 3DMRA 3QQ8A 1K83A 1S3SA 1KQFA 1CZ4A 1YLEA 3HU1A 3TIWA 1E32A 1YNJD 1PQEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2JIO A;  4AYB A;  2V45 A;  3HKZ A;  4CRZ A;  1QCS A;  1PQH A;  3GTG A;  5FTL A;  2WB1 A;  4KO8 A;  3QC8 A;  4AON B;  3QQ7 A;  2NYA A;  2JA5 A;  3CF2 A;  3GTM A;  4KLN A;  1E18 A;  5DYG A;  2JIP A;  1KQG A;  5DYI A;  1G8J A;  2EEO B;  5FTM A;  2VPW A;  2VPY A;  4AOK B;  1E5V A;  4CRY G;  2IV2 X;  2VPZ A;  1R7R A;  4DMR A;  1IW7 D;  2R7Z A;  1CR5 A;  3QWZ A;  2E2I A;  3FKI A;  2NAP A;  2PMZ A;  2JA6 A;  1EU1 A;  2YU9 A;  1Q16 A;  4AZD A;  3H0G A;  1I50 A;  5T5M D;  3HU3 A;  5B6C A;  2JA7 A;  3PLX B;  2NVX A;  1R9T A;  1TWF A;  1FDI A;  2JIR A;  4RV0 A;  3OUG A;  1R27 A;  1WCM A;  2Y0S A;  2R92 A;  1TWA A;  1PT0 A;  2C45 A;  3CQZ A;  4GA5 A;  3TM7 B;  4D7Z B;  1DMR A;  1TWG A;  4QIW A;  5EPP A;  1PYU B;  5FTN A;  4KOD A;  1VC3 B;  3IR7 A;  1WLF A;  3O5A A;  2B63 A;  2VPX A;  3IR6 A;  1AA6 A;  4CS0 A;  2PJH B;  1E61 A;  2WAQ A;  3GTP A;  2DMR A;  1Y4Z A;  2E7Z A;  5FTJ A;  1PT1 A;  1OGY A;  5GLF A;  1TWC A;  4KDI A;  2KI8 A;  1QDN A;  3HU2 A;  5T5I D;  2JIQ A;  4C2M A;  1UHD A;  3IR5 A;  4AAY A;  1H0H A;  1CZ5 A;  1Y5I A;  1AW8 B;  1FDO A;  1TMO A;  5C18 A;  2VUM A;  4KDL A;  1SFO A;  1H5N A;  1TWH A;  2R93 A;  3GTO A;  3GTK A;  1DMS A;  2NVY A;  4GA6 A;  2E2H A;  1UHE A;  2JIM A;  1PYQ A;  1G8K A;  1I3Q A;  2V3V A;  1Y1W A;  3GTQ A;  3GTL A;  1E60 A;  1PQF A;  1Y1V A;  3ML1 A;  3GTJ A;  1SIW A;  5FTK A;  1PPY A;  5C1B A;  3DMR A;  3QQ8 A;  1K83 A;  1S3S A;  1KQF A;  1CZ4 A;  1YLE A;  3HU1 A;  3TIW A;  1E32 A;  1PQE A; 
#chains in the Genus database with same CATH topology
 2PNW A;  2JIO A;  4AVR A;  4AYB A;  3X2J A;  2V45 A;  3X2N A;  3HKZ A;  1N10 A;  2HCZ X;  4CRZ A;  1OA9 A;  1QCS A;  1PQH A;  2ENG A;  2G5D A;  3GTG A;  3X2I A;  5FTL A;  2WB1 A;  4KO8 A;  3QC8 A;  4JJO A;  2KQA A;  3M3G A;  3QQ7 A;  4AON B;  2NYA A;  2JA5 A;  3X2P A;  4NOH A;  3CF2 A;  3GTM A;  1WC2 A;  2PIC A;  4KLN A;  1E18 A;  5DYG A;  2BE5 D;  2JIP A;  1KQG A;  2A68 D;  5DYI A;  1G8J A;  3SUL A;  3X2K A;  2EEO B;  2GAE A;  5FTM A;  2VPW A;  2VPY A;  4JP6 A;  4AOK B;  2CW0 D;  1E5V A;  2A6E D;  4CRY G;  2IV2 X;  2VPZ A;  3X2O A;  2YUJ A;  3X2H A;  1R7R A;  4DMR A;  1IW7 D;  2R7Z A;  1CR5 A;  3QWZ A;  2E2I A;  4FFT A;  3FKI A;  2NAP A;  2PMZ A;  2JA6 A;  1EU1 A;  3SUM A;  2YU9 A;  1Q16 A;  4AZD A;  3H0G A;  1I50 A;  5T5M D;  3HU3 A;  5B6C A;  2JA7 A;  3PLX B;  2NVX A;  1R9T A;  1TWF A;  1FDI A;  2A6H D;  2JIR A;  4ENG A;  4RV0 A;  3OUG A;  1R27 A;  1WCM A;  2Y0S A;  2R92 A;  1TWA A;  4L48 A;  3SUK A;  1PT0 A;  2C45 A;  3CQZ A;  4GA5 A;  3TM7 B;  4D7Z B;  5GLX A;  3SUJ A;  1DMR A;  3CZB A;  1L8F A;  1TWG A;  4QIW A;  5EPP A;  1PYU B;  5FTN A;  4KOD A;  1VC3 B;  3IR7 A;  1WLF A;  3O5A A;  2B63 A;  2VPX A;  3IR6 A;  4ZM7 A;  1AA6 A;  4CS0 A;  2PJH B;  1E61 A;  2WAQ A;  3GTP A;  2DMR A;  1Y4Z A;  2AE0 X;  2E7Z A;  4FG4 A;  1PT1 A;  5FTJ A;  3ENG A;  1OGY A;  5GLF A;  1TWC A;  2PJJ A;  4KDI A;  2G6G A;  2KI8 A;  1QDN A;  3X2L A;  3HU2 A;  5T5I D;  2JIQ A;  4C2M A;  1UHD A;  3IR5 A;  2BH0 A;  4AAY A;  1H0H A;  1CZ5 A;  2A69 D;  1Y5I A;  1ZYR D;  1AW8 B;  1FDO A;  1TMO A;  3X2M A;  5C18 A;  2O5J D;  2VUM A;  4KDL A;  4JP7 A;  5H4U A;  1SFO A;  1H5N A;  1TWH A;  5GM9 A;  2R93 A;  1YNN D;  4FER A;  1HD5 A;  3GTO A;  3GTK A;  1DMS A;  1SMY D;  2NVY A;  4GA6 A;  2E2H A;  4JS7 A;  1UHE A;  2JIM A;  1PYQ A;  4JCW A;  1BW4 A;  1G8K A;  2PI8 A;  1I3Q A;  3X2G A;  2V3V A;  1Y1W A;  3GTQ A;  3GTL A;  1E60 A;  1PQF A;  1ZC1 A;  1Y1V A;  3ML1 A;  3GTJ A;  1SIW A;  5FTK A;  1PPY A;  3D30 A;  5C1B A;  3DMR A;  3QQ8 A;  1K83 A;  1S3S A;  1KQF A;  1CZ4 A;  1YLE A;  1OA7 A;  3HU1 A;  5GLY A;  3TIW A;  1BW3 A;  1E32 A;  1YNJ D;  4FG2 A;  1PQE A; 
#chains in the Genus database with same CATH homology
 2PNW A;  2JIO A;  4AYB A;  2V45 A;  3HKZ A;  4CRZ A;  1QCS A;  1PQH A;  2G5D A;  3GTG A;  5FTL A;  2WB1 A;  4KO8 A;  3QC8 A;  4AON B;  3QQ7 A;  2NYA A;  2JA5 A;  4NOH A;  3CF2 A;  3GTM A;  2PIC A;  4KLN A;  1E18 A;  5DYG A;  2JIP A;  2BE5 D;  1KQG A;  2A68 D;  5DYI A;  1G8J A;  2EEO B;  2GAE A;  5FTM A;  2VPW A;  2VPY A;  4AOK B;  2CW0 D;  1E5V A;  2A6E D;  4CRY G;  2IV2 X;  2VPZ A;  2YUJ A;  1R7R A;  4DMR A;  1IW7 D;  2R7Z A;  1CR5 A;  3QWZ A;  2E2I A;  3FKI A;  2NAP A;  2PMZ A;  2JA6 A;  1EU1 A;  2YU9 A;  1Q16 A;  4AZD A;  3H0G A;  1I50 A;  5T5M D;  3HU3 A;  5B6C A;  2JA7 A;  3PLX B;  2NVX A;  1R9T A;  1TWF A;  1FDI A;  2A6H D;  2JIR A;  4RV0 A;  3OUG A;  1R27 A;  1WCM A;  2Y0S A;  2R92 A;  1TWA A;  1PT0 A;  2C45 A;  3CQZ A;  4GA5 A;  3TM7 B;  4D7Z B;  1DMR A;  3CZB A;  1TWG A;  4QIW A;  5EPP A;  1PYU B;  5FTN A;  4KOD A;  1VC3 B;  3IR7 A;  1WLF A;  3O5A A;  2B63 A;  2VPX A;  3IR6 A;  1AA6 A;  4CS0 A;  2PJH B;  1E61 A;  2WAQ A;  3GTP A;  2DMR A;  1Y4Z A;  2AE0 X;  2E7Z A;  5FTJ A;  1PT1 A;  1OGY A;  5GLF A;  1TWC A;  2PJJ A;  4KDI A;  2G6G A;  2KI8 A;  1QDN A;  3HU2 A;  5T5I D;  2JIQ A;  4C2M A;  1UHD A;  3IR5 A;  4AAY A;  1H0H A;  1CZ5 A;  2A69 D;  1Y5I A;  1ZYR D;  1AW8 B;  1FDO A;  1TMO A;  5C18 A;  2O5J D;  2VUM A;  4KDL A;  1SFO A;  1H5N A;  1TWH A;  2R93 A;  1YNN D;  3GTO A;  3GTK A;  1DMS A;  1SMY D;  2NVY A;  4GA6 A;  2E2H A;  1UHE A;  2JIM A;  1PYQ A;  1G8K A;  2PI8 A;  1I3Q A;  2V3V A;  1Y1W A;  3GTQ A;  3GTL A;  1E60 A;  1PQF A;  1ZC1 A;  1Y1V A;  3ML1 A;  3GTJ A;  1SIW A;  5FTK A;  1PPY A;  5C1B A;  3DMR A;  3QQ8 A;  1K83 A;  1S3S A;  1KQF A;  1CZ4 A;  1YLE A;  3HU1 A;  3TIW A;  1E32 A;  1YNJ D;  1PQE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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