The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
280
|
sequence length |
734
|
structure length |
734
|
Chain Sequence |
NLLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPALYDHVVKMVEMGKYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNLGAINNLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKASKDGILRQVVPDYEHLHDAYELLWEMPGNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQNTRDG
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Oxidoreductase
|
| molecule keywords |
Ribonucleoside-diphosphate reductase 1 subunit alpha
|
| publication title |
Molecular basis for allosteric specificity regulation in class Ia ribonucleotide reductase from Escherichia coli.
pubmed doi rcsb |
| source organism |
Escherichia coli (strain k12)
|
| total genus |
280
|
| structure length |
734
|
| sequence length |
734
|
| chains with identical sequence |
B, C, D
|
| ec nomenclature |
ec
1.17.4.1: Ribonucleoside-diphosphate reductase. |
| pdb deposition date | 2015-07-18 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00317 | Ribonuc_red_lgN | Ribonucleotide reductase, all-alpha domain |
| A | PF02867 | Ribonuc_red_lgC | Ribonucleotide reductase, barrel domain |
| A | PF03477 | ATP-cone | ATP cone domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | Alpha-Beta Barrel | Anaerobic Ribonucleotide-triphosphate Reductase Large Chain | Anaerobic Ribonucleotide-triphosphate Reductase Large Chain |
#chains in the Genus database with same CATH superfamily 1PEQ A; 1XJF A; 1H7A A; 1PEO A; 5CNV A; 1CM5 A; 1R9D A; 3PFL A; 3K8T A; 4ERM A; 7R1R A; 2CVV A; 4X3V A; 2CVX A; 1PEU A; 2CVS A; 2EUD A; 2BQ1 E; 3O0N A; 3RSR A; 1HK8 A; 2CVU A; 2Y8N A; 2XAV A; 1MZO A; 2XAK A; 1R1R A; 5R1R A; 2XAX A; 1H16 A; 1L1L A; 3HNF A; 2WGH A; 1ZYZ A; 1XJE A; 3HNE A; 2XAY A; 1XJG A; 4R1R A; 3TBA A; 2PFL A; 1H79 A; 2CVW A; 1XJM A; 3HND A; 3O0Q A; 3HNC A; 2XAP A; 1QHM A; 6R1R A; 1R8W A; 3R1R A; 2F3O A; 3S8C A; 2ZLF A; 3TB9 A; 2XAW A; 5CNT A; 3S87 A; 5CNU A; 1XJN A; 3S8A A; 2XO5 A; 1RLR A; 2HA9 A; 1H17 A; 1H7B A; 1XJJ A; 1PEM A; 2XO4 A; 2X0X A; 2ZLG A; 2CVY A; 1H78 A; 1XJK A; 2YAJ A; 5CNS A; 2R1R A; 1ZZD A; 1H18 A; 4MTJ A; 3O0O A; 2CVT A; 2XAZ A; 3S8B A; #chains in the Genus database with same CATH topology 1PEQ A; 5FAW A; 1XJF A; 1H7A A; 1PEO A; 5CNV A; 1CM5 A; 1R9D A; 3PFL A; 3K8T A; 4ERM A; 7R1R A; 5FAU A; 2CVV A; 4X3V A; 2CVX A; 1PEU A; 2CVS A; 2EUD A; 5A0Z A; 2BQ1 E; 3O0N A; 5A0U A; 3RSR A; 1HK8 A; 2CVU A; 2Y8N A; 2XAV A; 5KDP A; 1MZO A; 2XAK A; 1R1R A; 5R1R A; 2XAX A; 1H16 A; 1L1L A; 3HNF A; 2WGH A; 1ZYZ A; 1XJE A; 3HNE A; 2XAY A; 1XJG A; 4R1R A; 3TBA A; 2PFL A; 1H79 A; 2CVW A; 1XJM A; 3HND A; 5FAV A; 3O0Q A; 3HNC A; 2XAP A; 1QHM A; 6R1R A; 1R8W A; 3R1R A; 2F3O A; 3S8C A; 2ZLF A; 5FAY A; 3TB9 A; 2XAW A; 5CNT A; 3S87 A; 5CNU A; 1XJN A; 3S8A A; 2XO5 A; 1RLR A; 2HA9 A; 1H17 A; 1H7B A; 1XJJ A; 1PEM A; 2XO4 A; 2X0X A; 2ZLG A; 2CVY A; 1H78 A; 1XJK A; 2YAJ A; 5CNS A; 2R1R A; 1ZZD A; 1H18 A; 4MTJ A; 3O0O A; 2CVT A; 2XAZ A; 3S8B A; #chains in the Genus database with same CATH homology 1PEQ A; 5FAW A; 1XJF A; 1H7A A; 1PEO A; 5CNV A; 1CM5 A; 1R9D A; 3PFL A; 3K8T A; 4ERM A; 7R1R A; 5FAU A; 2CVV A; 4X3V A; 2CVX A; 1PEU A; 2CVS A; 2EUD A; 5A0Z A; 2BQ1 E; 3O0N A; 5A0U A; 3RSR A; 1HK8 A; 2CVU A; 2Y8N A; 2XAV A; 5KDP A; 1MZO A; 2XAK A; 1R1R A; 5R1R A; 2XAX A; 1H16 A; 1L1L A; 3HNF A; 2WGH A; 1ZYZ A; 1XJE A; 3HNE A; 2XAY A; 1XJG A; 4R1R A; 3TBA A; 2PFL A; 1H79 A; 2CVW A; 1XJM A; 3HND A; 5FAV A; 3O0Q A; 3HNC A; 2XAP A; 1QHM A; 6R1R A; 1R8W A; 3R1R A; 2F3O A; 3S8C A; 2ZLF A; 5FAY A; 3TB9 A; 2XAW A; 5CNT A; 3S87 A; 5CNU A; 1XJN A; 3S8A A; 2XO5 A; 1RLR A; 2HA9 A; 1H17 A; 1H7B A; 1XJJ A; 1PEM A; 2XO4 A; 2X0X A; 2ZLG A; 2CVY A; 1H78 A; 1XJK A; 2YAJ A; 5CNS A; 2R1R A; 1ZZD A; 1H18 A; 4MTJ A; 3O0O A; 2CVT A; 2XAZ A; 3S8B A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
