The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
111
|
sequence length |
391
|
structure length |
391
|
Chain Sequence |
NPNQQTEDEWKFTLKNAYINRDFDNDALKDTGSWSQAASLFYKSKMHDTPLVIADKPITIGADASVQYAVRLSSDKHVADTVLPFNKETQSQASDYLKYGATLKLGYDKTLLSVGELWLDLPVTAVDASRQLLTSYWGTNLKSQLSDQLYAEIGRVEKVSPRNEEDFKKFSFTANGITKESDGLNYIDLRYQFTPSLKGEYYFGNLEDLYNKHYVGLEHTWKQPTFALTSKFKYFNAKDDGNTFDIDAENIGLLETVKVKNHTFGLGYQQIIGESAYPLPDGFLPETYFINWNATGFFKEDEKSYHVMYGYDFKDYIPGLNAMVKYVYGHDFKAANGEKNHETESNVILNYAFQQPLLKGFALQYIRIDYNVKHGNDFGEDRLFVNYTKKF
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Membrane protein
|
| molecule keywords |
Benzoate transport porin BenP
|
| publication title |
Structural Insights into Outer Membrane Permeability of Acinetobacter baumannii.
pubmed doi rcsb |
| source organism |
Acinetobacter baumannii ab307-0294
|
| total genus |
111
|
| structure length |
391
|
| sequence length |
391
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2015-09-04 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF03573 | OprD | outer membrane porin, OprD family |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Beta Barrel | Porin | Porin |
#chains in the Genus database with same CATH superfamily 4AUI A; 8PRN A; 2Y0L A; 3T0S A; 1E54 A; 4FRT A; 2XE2 A; 3SY9 A; 5DL5 A; 3VZW X; 4C69 X; 3WI5 A; 4LSI A; 1GFN A; 3WI4 A; 1GFO A; 1GFP A; 2ODJ A; 2FGQ X; 2O4V A; 3VZU X; 4FMS A; 3SZD A; 4LSF A; 3UU2 A; 4BUM X; 2POR A; 3EMN X; 4D64 A; 3HWB A; 3K19 A; 2FGR A; 3SYB A; 3POX A; 2K4T A; 2ZLD A; 3SZV A; 2Y0K A; 2XE1 A; 1BH3 A; 2Y0H A; 3A2S X; 3O0E A; 4GCQ A; 1PHO A; 1GFM A; 4D5U A; 4FSP A; 4D65 A; 4RJW A; 4FT6 A; 3POU A; 5DL6 A; 1PRN A; 1OPF A; 2J1N A; 3UPG A; 1MPF A; 2XE3 A; 4KR8 A; 3FYX A; 7PRN A; 1GFQ A; 2ZFG A; 1HXX A; 4JFB A; 4LSE A; 5DL8 A; 5FVN A; 3VY8 X; 3NSG A; 2J4U P; 5JDP A; 3SYS A; 1BT9 A; 4FRX A; 4FSO A; 4GCS A; 3JTY A; 5PRN A; 3HW9 A; 2OMF A; 2PRN A; 3POQ A; 4KR4 A; 1OSM A; 3PRN A; 5DL7 A; 2Y2X A; 4FOZ A; 3POR A; 4KRA A; 4LSH A; 6PRN A; 3T20 A; 3VY9 X; 3T24 A; 1HXU A; 4GCP A; 4RJX A; 1HXT A; 2QTK A; 2XG6 A; 2XE5 A; 3SY7 A; 1H6S 1; 3VZT X; #chains in the Genus database with same CATH topology 3AA0 A; 2WVP A; 3KVD D; 3VE1 A; 4AUI A; 2Y0L A; 8PRN A; 4G75 A; 5KAI O; 1E54 A; 3T0S A; 4N58 A; 2KDY A; 3QRA A; 4FRT A; 4K3B A; 2AXT O; 2XE2 A; 3SY9 A; 5DL5 A; 3VZW X; 1Q9G A; 3RBH A; 4C69 X; 1QJP A; 3PGU A; 3HOE A; 4UB6 O; 3WI5 A; 4O3X B; 2X9K A; 3VZT X; 2F1V A; 5KAF O; 4O49 A; 3WU2 O; 4GF4 A; 4LSI A; 4AKM A; 4IL6 O; 4AKR B; 4Z3T A; 2R4L A; 1GFN A; 2XTQ A; 3NJT A; 4FUV A; 3WI4 A; 5G39 A; 3LK2 B; 1GFO A; 3KZI O; 5B5E O; 3AAA B; 1GFP A; 2ODJ A; 2YPV A; 2KXP A; 2FGQ X; 4E1T A; 2LFU A; 2O4V A; 3VZU X; 4O3Z A; 5AFU K; 4FMS A; 4XNL A; 1ZHW A; 2KZ7 B; 4RLB A; 3SZD A; 4LSF A; 4RLC A; 3UU2 A; 4BUM X; 5ADX K; 2POR A; 5GTI O; 2N2L A; 3EMN X; 3C5O A; 3LK4 1; 3HWB A; 4D64 A; 1ZHX A; 3K19 A; 3PQS A; 4JCH A; 5B66 O; 2FGR A; 4FES A; 3AA1 B; 2F1C X; 3SYB A; 2W80 C; 3POX A; 4FZN A; 3PGR A; 5G3A A; 4FZM A; 2K4T A; 2ZLD A; 3AAE A; 3DWO X; 3SZV A; 2Y0K A; 3AA0 B; 2XE1 A; 2R89 A; 1BH3 A; 2Y0H A; 3A2S X; 3O0E A; 4O4X A; 5E79 O; 4GCQ A; 4FQE A; 4B61 A; 2R4P A; 1T16 A; 1PHO A; 1GFM A; 1Q9F A; 2R4N A; 4C00 A; 4AYE C; 1IZN A; 2N2M A; 3AA6 A; 3DA3 A; 2F1T A; 5T5F A; 4D5U A; 4CTD A; 2JMM A; 2WJQ A; 3G7G A; 4FSP A; 1MM4 A; 2K0L A; 4O3W A; 4D65 A; 1ORM A; 3DZM A; 4K3C A; 4RJW A; 5GV0 A; 1ZHZ A; 5G26 A; 2MNH A; 1T1L A; 4FT6 A; 3POU A; 1BXW A; 3BS0 A; 4AYI D; 5DL6 A; 1PRN A; 4FZL A; 5GTH O; 1OPF A; 2J1N A; 4AFK A; 2KXP B; 2GE4 A; 2ERV A; 1MPF A; 2YNK A; 3A0B O; 3AAA A; 2XE3 A; 3A0H O; 4N59 A; 4XNK A; 4QQ1 A; 4C4V A; 4KR8 A; 3FYX A; 2R88 A; 7PRN A; 3VE2 A; 5IYU A; 2JQY A; 3LK3 A; 1GFQ A; 1ZHT A; 2ZFG A; 4RL9 A; 5ADX L; 1HXX A; 3HOL A; 4JFB A; 1YS5 A; 4LSE A; 2MHL A; 5DL8 A; 5FVN A; 3BRZ A; 3V8U A; 3VY8 X; 3AA7 A; 3NSG A; 2J4U P; 5JDP A; 3TZG A; 3UAQ A; 3SYS A; 4N75 A; 5H2F O; 1BT9 A; 1ZHY A; 2M06 A; 4AZL A; 4FRX A; 4FSO A; 3AAE B; 4AYN A; 4GCS A; 4PJ0 O; 5D5D A; 3JTY A; 5PRN A; 2IWV A; 3HW9 A; 2Y7S A; 3QRC A; 2OMF A; 2PRN A; 5EE2 A; 2XTR A; 3PGS A; 3POQ A; 4N74 A; 4KR4 A; 1OSM A; 4PR7 A; 4G76 A; 4AKR A; 4O3Y A; 3PRN A; 5DL7 A; 1IZN B; 3DWN A; 3PQU A; 3AA6 B; 2Y2X A; 1THQ A; 2R8A A; 4FOZ A; 3POR A; 5TIS O; 3LK2 A; 4KRA A; 4O4U A; 4UB8 O; 2X27 X; 1G90 A; 1P4T A; 5AFU L; 2IWW A; 2LHF A; 3BRY A; 4LSH A; 6PRN A; 3UPG A; 4E1S A; 2KZ7 A; 2R4O A; 5G38 A; 3T20 A; 4PUX A; 4AYD C; 4F4B A; 1QJ9 A; 3DA4 A; 3VY9 X; 3T24 A; 1HXU A; 2WJR A; 2M07 A; 2XMX A; 4GCP A; 3GP6 A; 1HXT A; 2QTK A; 2XG6 A; 4RJX A; 1MM5 A; 4C4V B; 3JCU O; 3LK3 B; 2XE5 A; 1S5L O; 3AA1 A; 4GHB A; 3SY7 A; 2W81 C; 1QJ8 A; 4AYM C; 1H6S 1; 2KC0 A; 4U9C A; 3PF1 A; 3LK4 2; 3AA7 B; #chains in the Genus database with same CATH homology 3AA0 A; 3KVD D; 3VE1 A; 4AUI A; 8PRN A; 2Y0L A; 4G75 A; 3T0S A; 1E54 A; 4N58 A; 2KDY A; 3QRA A; 4FRT A; 2XE2 A; 3SY9 A; 5DL5 A; 3VZW X; 1Q9G A; 3RBH A; 4C69 X; 1QJP A; 3HOE A; 3WI5 A; 4O3X B; 3VZT X; 2F1V A; 4O49 A; 4AKR B; 4GF4 A; 4LSI A; 4AKM A; 4Z3T A; 1GFN A; 2XTQ A; 4FUV A; 3WI4 A; 3LK2 B; 1GFO A; 3AAA B; 1GFP A; 2ODJ A; 2YPV A; 2KXP A; 2FGQ X; 4E1T A; 2LFU A; 2O4V A; 3VZU X; 4O3Z A; 5AFU K; 4FMS A; 4XNL A; 1ZHW A; 2KZ7 B; 4RLB A; 3SZD A; 4LSF A; 4RLC A; 3UU2 A; 4BUM X; 5ADX K; 2POR A; 2N2L A; 3EMN X; 3C5O A; 3LK4 1; 3HWB A; 4D64 A; 1ZHX A; 3K19 A; 3PQS A; 4JCH A; 1G90 A; 2FGR A; 4FES A; 3AA1 B; 3SYB A; 2W80 C; 3POX A; 4FZN A; 4FZM A; 2K4T A; 2ZLD A; 3AAE A; 3SZV A; 2Y0K A; 3AA0 B; 2XE1 A; 1BH3 A; 2Y0H A; 3A2S X; 3O0E A; 4O4X A; 4GCQ A; 4B61 A; 1PHO A; 1GFM A; 1Q9F A; 4AYE C; 1IZN A; 2N2M A; 3AA6 A; 3DA3 A; 2F1T A; 5T5F A; 4D5U A; 2JMM A; 3G7G A; 4FSP A; 1MM4 A; 2K0L A; 4O3W A; 4D65 A; 1ORM A; 4RJW A; 5GV0 A; 1ZHZ A; 5G26 A; 2MNH A; 4FT6 A; 3POU A; 1BXW A; 4AYI D; 5DL6 A; 1PRN A; 4FZL A; 1OPF A; 2J1N A; 4AFK A; 2KXP B; 2GE4 A; 2ERV A; 1MPF A; 2YNK A; 3AAA A; 4N59 A; 2XE3 A; 4XNK A; 3UPG A; 4QQ1 A; 4KR8 A; 3FYX A; 7PRN A; 3VE2 A; 5IYU A; 3LK3 A; 1GFQ A; 1ZHT A; 2ZFG A; 4RL9 A; 5ADX L; 1HXX A; 3HOL A; 4JFB A; 1YS5 A; 4LSE A; 2MHL A; 5DL8 A; 5FVN A; 3V8U A; 3VY8 X; 3AA7 A; 3NSG A; 2J4U P; 5JDP A; 3TZG A; 3UAQ A; 3SYS A; 1BT9 A; 1ZHY A; 2M06 A; 4AZL A; 4FRX A; 4FSO A; 3AAE B; 4AYN A; 4GCS A; 5D5D A; 3JTY A; 5PRN A; 3HW9 A; 2Y7S A; 3QRC A; 2OMF A; 2PRN A; 5EE2 A; 2XTR A; 3POQ A; 4KR4 A; 1OSM A; 4G76 A; 4AKR A; 4O3Y A; 3PRN A; 5DL7 A; 1IZN B; 3PQU A; 3AA6 B; 2Y2X A; 1THQ A; 4FOZ A; 3POR A; 3LK2 A; 4KRA A; 4O4U A; 2X27 X; 1P4T A; 5AFU L; 2LHF A; 4LSH A; 6PRN A; 4E1S A; 2KZ7 A; 3T20 A; 4PUX A; 4AYD C; 4F4B A; 1QJ9 A; 3DA4 A; 3VY9 X; 3T24 A; 1HXU A; 2XMX A; 2M07 A; 4GCP A; 3GP6 A; 1HXT A; 2XG6 A; 2QTK A; 4RJX A; 1MM5 A; 3LK3 B; 2XE5 A; 3AA1 A; 4GHB A; 3SY7 A; 2W81 C; 1QJ8 A; 4AYM C; 1H6S 1; 2KC0 A; 4U9C A; 3LK4 2; 3AA7 B;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
