5GAHO

Rnc in complex with srp with detached ng domain
Total Genus 38
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
38
sequence length
125
structure length
125
Chain Sequence
MRHRKSGRQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRSEKAEAA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords SRP 4.5S RNA
publication title Structures of the E. coli translating ribosome with SRP and its receptor and with the translocon.
pubmed doi rcsb
total genus 38
structure length 125
sequence length 125
ec nomenclature
pdb deposition date 2015-11-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
O PF01196 Ribosomal_L17 Ribosomal protein L17
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1030.10 Alpha Beta Alpha-Beta Complex 50s Ribosomal Protein L17; Chain: A, Ribosomal protein L17 5gahO01
5DM7K 4WFNK 3PIPK 3CF5K 5HL7K 5GAHO 4UY8N 5JVGK 4IOAK 4WFBK 4IOCK 5GADO 5GAGO 5H1SP 4WFAK 4WCEK 3J7ZN 4IO9K 2CQMA 2ZJRK 3PIOK 5DM6K 5MLCP 5GAEO 5JVHK 2ZJPK 2ZJQK 3DLLK 4WF9K 1GD8A 4U67K
chains in the Genus database with same CATH superfamily
5DM7K 4WFNK 3PIPK 3CF5K 5HL7K 5GAHO 4UY8N 5JVGK 4IOAK 4WFBK 4IOCK 5GADO 5GAGO 5H1SP 4WFAK 4WCEK 3J7ZN 4IO9K 2CQMA 2ZJRK 3PIOK 5DM6K 5MLCP 5GAEO 5JVHK 2ZJPK 2ZJQK 3DLLK 4WF9K 1GD8A 4U67K
chains in the Genus database with same CATH topology
5DM7K 4WFNK 3PIPK 3CF5K 5HL7K 5GAHO 4UY8N 5JVGK 4IOAK 4WFBK 4IOCK 5GADO 5GAGO 5H1SP 4WFAK 4WCEK 3J7ZN 4IO9K 2CQMA 2ZJRK 3PIOK 5DM6K 5MLCP 5GAEO 5JVHK 2ZJPK 2ZJQK 3DLLK 4WF9K 1GD8A 4U67K
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5DM7 K;  4WFN K;  3PIP K;  3CF5 K;  5HL7 K;  5GAH O;  4UY8 N;  5JVG K;  4IOA K;  4WFB K;  4IOC K;  5GAD O;  5GAG O;  5H1S P;  4WFA K;  4WCE K;  3J7Z N;  4IO9 K;  2CQM A;  2ZJR K;  3PIO K;  5DM6 K;  5MLC P;  5GAE O;  5JVH K;  2ZJP K;  2ZJQ K;  3DLL K;  4WF9 K;  1GD8 A;  4U67 K; 
#chains in the Genus database with same CATH topology
 5DM7 K;  4WFN K;  3PIP K;  3CF5 K;  5HL7 K;  5GAH O;  4UY8 N;  5JVG K;  4IOA K;  4WFB K;  4IOC K;  5GAD O;  5GAG O;  5H1S P;  4WFA K;  4WCE K;  3J7Z N;  4IO9 K;  2CQM A;  2ZJR K;  3PIO K;  5DM6 K;  5MLC P;  5GAE O;  5JVH K;  2ZJP K;  2ZJQ K;  3DLL K;  4WF9 K;  1GD8 A;  4U67 K; 
#chains in the Genus database with same CATH homology
 5DM7 K;  4WFN K;  3PIP K;  3CF5 K;  5HL7 K;  5GAH O;  4UY8 N;  5JVG K;  4IOA K;  4WFB K;  4IOC K;  5GAD O;  5GAG O;  5H1S P;  4WFA K;  4WCE K;  3J7Z N;  4IO9 K;  2CQM A;  2ZJR K;  3PIO K;  5DM6 K;  5MLC P;  5GAE O;  5JVH K;  2ZJP K;  2ZJQ K;  3DLL K;  4WF9 K;  1GD8 A;  4U67 K; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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