6SJ9A

Proteasome accessory factor b/c (pafbc) of arthrobacter aurescens
Total Genus 183
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
183
Knots found
sequence length
664
structure length
642
Chain Sequence
GASRTERLLNLLLALLNTKVGLPRAVLREKVYHDSADNDVAFGRMFERDKVDLKQFGFEIETLMDPASARYRIGKDSNRLPDVSLTPAESTVLLLAAQLWERAALGSAAANAVDVDLPAGVQPRIKPAGQAFDDVVAAMHGKHPIRFGYQAVSTGREEVREVEPWGLGSRFGQWYLVGLDRGRGAKRVFRLSRMTTAISVLTTGSFHPPKDFNARAELDELNELPVRQATLVIDKDKLLALRKKATSLQDAPDESGRDRITVDFRDPEQLAEELASYGPHVKVTGPAELSAAVVRRLQAAADFDDAPLPPLEFPEAGRAPRARKRTSEDQLARMLQLVPFLVHHQGLHIQEVADHFGISRKALIDDLKILICSGLPEGYPDDLLDIQWENDHVYISEHLDLNRPVRFSEEEAAALLTGLAMLGDLPALAGGSGSALESVTIKLTGAAGEAARLAGSVSGQSVAPEQAQAFAAITQAIREGRQLRLRYFSLQRDEVTERDVDPLRLYSLDSTWYFEAYCHSKAGVRNFRLDRVESLEPNGRAVSGSATAGQDFPARLFTPGEDDVLVCLELTRQGAGLADDYYAERTAPLPDGGLLAEVRFGDAGWLPMFVSQHGGSVRILEPESLRQETRAWIDAALVQYDS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transcription
molecule keywords Proteasome accessory factor B/C (PafBC)
publication title Structure and functional implications of WYL domain-containing bacterial DNA damage response regulator PafBC.
pubmed doi rcsb
source organism Paenarthrobacter aurescens
total genus 183
structure length 642
sequence length 664
chains with identical sequence B
other databases KnotProt 2.0: S -31
ec nomenclature
pdb deposition date 2019-08-13
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the pdb database (?% sequence similarity)

 
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