8RUCI

Activated spinach rubisco complexed with 2-carboxyarabinitol bisphosphate
Total Genus 25
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
123
structure length
123
Chain Sequence
MQVWPILNLKKYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETDHGFVYREHHNSPGYYDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNREVQCISFIAYKPAGY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase (carbon-carbon)
molecule keywords RIBULOSE-1,5-BISPHOSPHATE CARBOXYLASE/OXYGENASE
publication title Large structures at high resolution: the 1.6 A crystal structure of spinach ribulose-1,5-bisphosphate carboxylase/oxygenase complexed with 2-carboxyarabinitol bisphosphate.
pubmed doi rcsb
total genus 25
structure length 123
sequence length 123
chains with identical sequence J, K, L
ec nomenclature ec 4.1.1.39: Ribulose-bisphosphate carboxylase.
pdb deposition date 1996-02-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
I PF00101 RuBisCO_small Ribulose bisphosphate carboxylase, small chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunit 8rucI00
3RUBS 1RCXC 4F0KB 8RUCI 1UZDC 2YBVB 2V6AI 1RSCI 1RLDS 1UPPI 1BXNI 3AXMS 4F0HB 1UZHC 1EJ7S 1UW9C 2V63I 1RXOC 3AXKS 1GK8I 2VDII 2V69I 1BWVS 2V67I 4F0MB 1UWAC 1RLCS 4RUBS 1IR1S 1AA1C 3ZXWB 4HHHS 1RBOC 1RBLI 1SVDM 2V68I 4MKVS 1RCOC 1AUSS 2VDHI 1UPMC 1IR21 1IWAB 1WDDS
chains in the Genus database with same CATH superfamily
3RUBS 1RCXC 4LQ4A 4F0KB 4F9TA 4QG3A 8RUCI 1UZDC 1ZHOA 2YBVB 2V6AI 1RSCI 4QGBA 1RLDS 1UPPI 4QVIA 1BXNI 3AXMS 3U4MA 1AD2A 1UZHC 1EJ7S 1UW9C 2FHZA 2V63I 1RXOC 3AXKS 5DM60 4F0HB 3TG8A 3U56A 1GK8I 2VDII 2V69I 1BWVS 1I2AA 3QOYA 2V67I 4F0MB 1DWUA 3UMYA 4REOA 1UWAC 1RLCS 3FPNA 4RUBS 3ZQJA 1IR1S 1AA1C 4DFCB 3ZXWB 2DFXI 4HHHS 1RBOC 1RBLI 1SVDM 2V68I 4MKVS 1RCOC 1AUSS 5DM70 1MZPA 1CJSA 2VDHI 1U63A 2HW8A 1UPMC 1IR21 1IWAB 1WDDS
chains in the Genus database with same CATH topology
3RUBS 1RCXC 4F0KB 8RUCI 1UZDC 2YBVB 2V6AI 1RSCI 1RLDS 1UPPI 1BXNI 3AXMS 4F0HB 1UZHC 1EJ7S 1UW9C 2V63I 1RXOC 3AXKS 1GK8I 2VDII 2V69I 1BWVS 2V67I 4F0MB 1UWAC 1RLCS 4RUBS 1IR1S 1AA1C 3ZXWB 4HHHS 1RBOC 1RBLI 1SVDM 2V68I 4MKVS 1RCOC 1AUSS 2VDHI 1UPMC 1IR21 1IWAB 1WDDS
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3RUB S;  1RCX C;  4F0K B;  8RUC I;  1UZD C;  2YBV B;  2V6A I;  1RSC I;  1RLD S;  1UPP I;  1BXN I;  3AXM S;  4F0H B;  1UZH C;  1EJ7 S;  1UW9 C;  2V63 I;  1RXO C;  3AXK S;  1GK8 I;  2VDI I;  2V69 I;  1BWV S;  2V67 I;  4F0M B;  1UWA C;  1RLC S;  4RUB S;  1IR1 S;  1AA1 C;  3ZXW B;  4HHH S;  1RBO C;  1RBL I;  1SVD M;  2V68 I;  4MKV S;  1RCO C;  1AUS S;  2VDH I;  1UPM C;  1IR2 1;  1IWA B;  1WDD S; 
#chains in the Genus database with same CATH topology
 3RUB S;  1RCX C;  4LQ4 A;  4F0K B;  4F9T A;  4QG3 A;  8RUC I;  1UZD C;  1ZHO A;  2YBV B;  2V6A I;  1RSC I;  4QGB A;  1RLD S;  1UPP I;  4QVI A;  1BXN I;  3AXM S;  3U4M A;  1AD2 A;  1UZH C;  1EJ7 S;  1UW9 C;  2FHZ A;  2V63 I;  1RXO C;  3AXK S;  5DM6 0;  4F0H B;  3TG8 A;  3U56 A;  1GK8 I;  2VDI I;  2V69 I;  1BWV S;  1I2A A;  3QOY A;  2V67 I;  4F0M B;  1DWU A;  3UMY A;  4REO A;  1UWA C;  1RLC S;  3FPN A;  4RUB S;  3ZQJ A;  1IR1 S;  1AA1 C;  4DFC B;  3ZXW B;  2DFX I;  4HHH S;  1RBO C;  1RBL I;  1SVD M;  2V68 I;  4MKV S;  1RCO C;  1AUS S;  5DM7 0;  1MZP A;  1CJS A;  2VDH I;  1U63 A;  2HW8 A;  1UPM C;  1IR2 1;  1IWA B;  1WDD S; 
#chains in the Genus database with same CATH homology
 3RUB S;  1RCX C;  4F0K B;  8RUC I;  1UZD C;  2YBV B;  2V6A I;  1RSC I;  1RLD S;  1UPP I;  1BXN I;  3AXM S;  4F0H B;  1UZH C;  1EJ7 S;  1UW9 C;  2V63 I;  1RXO C;  3AXK S;  1GK8 I;  2VDI I;  2V69 I;  1BWV S;  2V67 I;  4F0M B;  1UWA C;  1RLC S;  4RUB S;  1IR1 S;  1AA1 C;  3ZXW B;  4HHH S;  1RBO C;  1RBL I;  1SVD M;  2V68 I;  4MKV S;  1RCO C;  1AUS S;  2VDH I;  1UPM C;  1IR2 1;  1IWA B;  1WDD S; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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