Finding intermodel H-bonds
Finding intramodel H-bonds
Constraints relaxed by 0.4 angstroms and 20 degrees
Models used:
	#0 1dna_A.cif

H-bonds (donor, acceptor, hydrogen, D..A dist, D-H..A dist):
LYS 1.A NZ     GLU 5.A OE1    no hydrogen  3.156  N/A
GLN 2.A N      GLN 2.A OE1    no hydrogen  2.815  N/A
GLN 2.A NE2    ARG 34.A O     no hydrogen  3.029  N/A
TYR 3.A OH     VAL 169.A O    no hydrogen  2.603  N/A
GLU 5.A N      LYS 1.A O      no hydrogen  2.907  N/A
LEU 6.A N      GLN 2.A O      no hydrogen  3.061  N/A
MET 7.A N      TYR 3.A O      no hydrogen  3.121  N/A
GLN 8.A N      LEU 4.A O      no hydrogen  3.001  N/A
GLN 8.A NE2    GLN 8.A O      no hydrogen  3.208  N/A
GLN 8.A NE2    ASP 12.A OD1   no hydrogen  2.826  N/A
LYS 9.A N      GLU 5.A O      no hydrogen  2.941  N/A
VAL 10.A N     LEU 6.A O      no hydrogen  2.925  N/A
LEU 11.A N     MET 7.A O      no hydrogen  3.070  N/A
ASP 12.A N     GLN 8.A O      no hydrogen  2.885  N/A
GLU 13.A N     LYS 9.A O      no hydrogen  2.742  N/A
THR 15.A N     SER 27.A O     no hydrogen  2.838  N/A
LYS 17.A N     THR 25.A O     no hydrogen  2.759  N/A
LYS 17.A NZ    ASP 204.A OD2  no hydrogen  3.319  N/A
ARG 20.A NH1   ILE 263.A OXT  no hydrogen  2.983  N/A
ARG 20.A NH2   ILE 263.A OXT  no hydrogen  3.076  N/A
THR 21.A OG1   ASP 19.A OD1   no hydrogen  3.265  N/A
THR 21.A OG1   ASP 19.A OD2   no hydrogen  2.588  N/A
THR 21.A OG1   THR 23.A OG1   no hydrogen  2.754  N/A
GLY 22.A N     ASP 19.A O     no hydrogen  2.764  N/A
THR 23.A N     ASP 19.A OD1   no hydrogen  3.082  N/A
THR 23.A OG1   THR 21.A OG1   no hydrogen  2.754  N/A
GLY 24.A N     ASP 19.A OD1   no hydrogen  2.958  N/A
THR 25.A N     LYS 17.A O     no hydrogen  2.805  N/A
THR 25.A OG1   LYS 17.A O     no hydrogen  3.286  N/A
LEU 26.A N     LEU 207.A O    no hydrogen  2.875  N/A
SER 27.A N     THR 15.A O     no hydrogen  2.774  N/A
SER 27.A OG    ILE 28.A O     no hydrogen  3.381  N/A
SER 27.A OG    ASP 204.A OD1  no hydrogen  2.632  N/A
SER 27.A OG    THR 205.A O    no hydrogen  3.458  N/A
ILE 28.A N     THR 205.A O    no hydrogen  2.985  N/A
GLY 30.A N     GLY 203.A O    no hydrogen  3.080  N/A
HIS 31.A N     GLY 202.A O    no hydrogen  3.366  N/A
GLN 32.A NE2   THR 201.A OG1  no hydrogen  2.951  N/A
MET 33.A N     TRP 200.A O    no hydrogen  2.955  N/A
ARG 34.A NH1   ASP 197.A OD2  no hydrogen  3.538  N/A
PHE 35.A N     PHE 198.A O    no hydrogen  2.893  N/A
LEU 37.A N     GLY 196.A O    no hydrogen  2.875  N/A
GLN 38.A N     ASN 36.A OD1   no hydrogen  2.849  N/A
GLN 38.A NE2   VAL 195.A O    no hydrogen  2.924  N/A
ASP 39.A N     ASN 36.A O     no hydrogen  2.927  N/A
PHE 41.A N     PRO 227.A O    no hydrogen  2.864  N/A
LEU 43.A N     PHE 41.A O     no hydrogen  2.787  N/A
LYS 47.A NZ    PHE 170.A O    no hydrogen  2.905  N/A
CYS 49.A N     TYR 251.A OH   no hydrogen  3.097  N/A
CYS 49.A SG    VAL 44.A O     no hydrogen  4.005  N/A
CYS 49.A SG    LYS 47.A O     no hydrogen  4.006  N/A
ARG 52.A NE    SER 53.A OG    no hydrogen  3.149  N/A
ARG 52.A NH2   SER 53.A OG    no hydrogen  3.198  N/A
SER 53.A N     HIS 50.A O     no hydrogen  3.366  N/A
ILE 55.A N     LEU 51.A O     no hydrogen  2.848  N/A
HIS 56.A N     ARG 52.A O     no hydrogen  3.285  N/A
HIS 56.A ND1   TYR 70.A OH    no hydrogen  2.830  N/A
GLU 57.A N     SER 53.A O     no hydrogen  3.114  N/A
LEU 58.A N     ILE 54.A O     no hydrogen  3.233  N/A
LEU 59.A N     ILE 55.A O     no hydrogen  3.053  N/A
TRP 60.A N     HIS 56.A O     no hydrogen  3.075  N/A
TRP 60.A NE1   ASN 67.A O     no hydrogen  2.794  N/A
PHE 61.A N     GLU 57.A O     no hydrogen  2.822  N/A
LEU 62.A N     LEU 58.A O     no hydrogen  2.989  N/A
GLN 63.A N     LEU 59.A O     no hydrogen  3.211  N/A
GLN 63.A N     TRP 60.A O     no hydrogen  3.185  N/A
GLN 63.A NE2   LEU 59.A O     no hydrogen  3.344  N/A
GLY 64.A N     PHE 61.A O     no hydrogen  2.952  N/A
ASP 65.A N     TRP 60.A O     no hydrogen  3.423  N/A
ASN 67.A N     ASP 65.A OD1   no hydrogen  3.262  N/A
ASN 67.A ND2   ASN 86.A O     no hydrogen  2.851  N/A
ASN 67.A ND2   ASP 88.A OD1   no hydrogen  2.943  N/A
ILE 68.A N     GLY 87.A O     no hydrogen  3.073  N/A
ALA 69.A N     ASN 67.A OD1   no hydrogen  2.798  N/A
TYR 70.A OH    HIS 56.A ND1   no hydrogen  2.830  N/A
HIS 72.A N     ILE 68.A O     no hydrogen  2.831  N/A
HIS 72.A NE2   ASP 80.A OD1   no hydrogen  2.863  N/A
HIS 72.A NE2   ASP 80.A OD2   no hydrogen  3.157  N/A
GLU 73.A N     ALA 69.A O     no hydrogen  2.920  N/A
ASN 74.A N     TYR 70.A O     no hydrogen  3.174  N/A
ASN 75.A N     HIS 72.A O     no hydrogen  2.811  N/A
VAL 76.A N     LEU 71.A O     no hydrogen  2.777  N/A
TRP 79.A NE1   GLU 57.A OE2   no hydrogen  2.867  N/A
ASP 80.A N     THR 77.A O     no hydrogen  3.023  N/A
GLU 81.A N     GLU 81.A OE1   no hydrogen  2.903  N/A
TRP 82.A N     TRP 79.A O     no hydrogen  3.249  N/A
ALA 83.A N     ASP 80.A O     no hydrogen  3.303  N/A
ASP 84.A N     ASP 88.A O     no hydrogen  3.032  N/A
ASN 86.A N     ASP 84.A OD1   no hydrogen  2.960  N/A
GLY 87.A N     ASP 84.A O     no hydrogen  2.835  N/A
ASP 88.A N     ASP 84.A OD1   no hydrogen  2.771  N/A
LEU 89.A N     THR 66.A O     no hydrogen  3.248  N/A
VAL 92.A N     GLY 90.A O     no hydrogen  2.753  N/A
GLN 96.A N     VAL 92.A O     no hydrogen  3.175  N/A
GLN 96.A NE2   PRO 91.A O     no hydrogen  2.845  N/A
GLN 96.A NE2   GLU 136.A OE1  no hydrogen  2.991  N/A
TRP 97.A N     TYR 93.A O     no hydrogen  2.876  N/A
ARG 98.A N     GLY 94.A O     no hydrogen  3.097  N/A
ARG 98.A NE    ASP 109.A OD1  no hydrogen  3.046  N/A
ARG 98.A NE    ASP 109.A OD2  no hydrogen  3.377  N/A
ARG 98.A NH1   LEU 62.A O     no hydrogen  2.740  N/A
ARG 98.A NH2   ASP 109.A OD2  no hydrogen  2.955  N/A
ALA 99.A N     LYS 95.A O     no hydrogen  2.698  N/A
TRP 100.A N    ILE 108.A O    no hydrogen  2.992  N/A
THR 102.A N    ARG 106.A O    no hydrogen  2.986  N/A
THR 102.A OG1  ASP 104.A OD1  no hydrogen  2.638  N/A
GLY 105.A N    THR 102.A O    no hydrogen  3.360  N/A
ARG 106.A N    THR 102.A OG1  no hydrogen  2.764  N/A
ARG 106.A NH1  ASP 104.A OD1  no hydrogen  3.014  N/A
ARG 106.A NH1  ASP 104.A OD2  no hydrogen  3.149  N/A
HIS 107.A ND1  ALA 99.A O     no hydrogen  3.057  N/A
ILE 108.A N    TRP 100.A O    no hydrogen  2.920  N/A
GLN 110.A NE2  GLN 96.A O     no hydrogen  2.937  N/A
GLN 110.A NE2  SER 130.A O    no hydrogen  2.857  N/A
ILE 111.A N    TRP 97.A O     no hydrogen  3.423  N/A
THR 112.A N    ASP 109.A OD1  no hydrogen  3.304  N/A
THR 112.A OG1  ASP 109.A OD2  no hydrogen  2.775  N/A
THR 113.A N    ASP 109.A O    no hydrogen  3.096  N/A
THR 113.A OG1  ASP 109.A O    no hydrogen  2.802  N/A
VAL 114.A N    GLN 110.A O    no hydrogen  2.980  N/A
LEU 115.A N    ILE 111.A O    no hydrogen  3.081  N/A
ASN 116.A N    THR 112.A O    no hydrogen  2.951  N/A
GLN 117.A N    THR 113.A O    no hydrogen  3.051  N/A
GLN 117.A NE2  THR 113.A O    no hydrogen  3.470  N/A
LEU 118.A N    VAL 114.A O    no hydrogen  2.876  N/A
LYS 119.A N    LEU 115.A O    no hydrogen  3.249  N/A
ASN 120.A N    ASN 116.A O    no hydrogen  2.929  N/A
ASN 120.A ND2  ASN 116.A O    no hydrogen  2.972  N/A
ASP 121.A N    GLN 117.A O    no hydrogen  2.708  N/A
SER 124.A N    ASP 121.A O    no hydrogen  2.897  N/A
ARG 126.A N    SER 124.A OG   no hydrogen  3.240  N/A
VAL 129.A N    PHE 149.A O    no hydrogen  3.080  N/A
SER 130.A N    GLN 110.A OE1  no hydrogen  2.849  N/A
ALA 131.A N    ALA 147.A O    no hydrogen  2.932  N/A
TRP 132.A N    SER 130.A OG   no hydrogen  3.274  N/A
ASN 133.A N    ALA 131.A O    no hydrogen  2.820  N/A
ASN 133.A ND2  GLN 96.A OE1   no hydrogen  2.946  N/A
GLU 136.A N    ASN 133.A O    no hydrogen  2.910  N/A
LYS 139.A N    GLU 136.A O    no hydrogen  2.810  N/A
LYS 139.A NZ   GLU 136.A OE2  no hydrogen  3.265  N/A
MET 140.A N    LEU 137.A O    no hydrogen  3.249  N/A
ALA 141.A N    LEU 89.A O     no hydrogen  2.771  N/A
CYS 145.A N    TYR 93.A OH    no hydrogen  3.018  N/A
HIS 146.A ND1  TYR 180.A OH   no hydrogen  2.838  N/A
PHE 149.A N    VAL 129.A O    no hydrogen  3.120  N/A
GLN 150.A N    GLN 161.A O    no hydrogen  2.924  N/A
PHE 151.A N    ILE 127.A O    no hydrogen  2.953  N/A
TYR 152.A N    SER 159.A O    no hydrogen  2.911  N/A
ALA 154.A N    LYS 157.A O    no hydrogen  3.112  N/A
LYS 157.A N    ALA 154.A O    no hydrogen  2.847  N/A
LYS 157.A NZ   ASP 155.A O    no hydrogen  3.534  N/A
LEU 158.A N    GLU 194.A O    no hydrogen  2.727  N/A
SER 159.A N    TYR 152.A O    no hydrogen  2.829  N/A
CYS 160.A N    ASP 197.A O    no hydrogen  2.977  N/A
CYS 160.A SG   GLN 150.A O    no hydrogen  3.884  N/A
GLN 161.A N    GLN 150.A O    no hydrogen  2.863  N/A
LEU 162.A N    VAL 199.A O    no hydrogen  2.898  N/A
TYR 163.A N    PHE 148.A O    no hydrogen  2.815  N/A
GLN 164.A N    THR 201.A O    no hydrogen  2.869  N/A
GLN 164.A NE2  SER 166.A O    no hydrogen  3.139  N/A
GLN 164.A NE2  ASN 176.A OD1  no hydrogen  3.138  N/A
ARG 165.A N    CYS 145.A O    no hydrogen  2.890  N/A
ARG 165.A NE   PRO 144.A O    no hydrogen  2.876  N/A
ARG 165.A NH2  ALA 143.A O    no hydrogen  2.862  N/A
CYS 167.A N    ASP 204.A O    no hydrogen  2.908  N/A
VAL 169.A N    HIS 206.A O    no hydrogen  2.949  N/A
LEU 171.A N    ASN 168.A OD1  no hydrogen  3.341  N/A
LEU 173.A N    ASN 168.A O    no hydrogen  3.213  N/A
ASN 176.A N    GLY 172.A O    no hydrogen  2.967  N/A
ILE 177.A N    LEU 173.A O    no hydrogen  2.924  N/A
ALA 178.A N    PRO 174.A O    no hydrogen  3.424  N/A
SER 179.A N    PHE 175.A O    no hydrogen  2.888  N/A
TYR 180.A N    ASN 176.A O    no hydrogen  3.158  N/A
TYR 180.A OH   HIS 146.A ND1  no hydrogen  2.838  N/A
ALA 181.A N    ILE 177.A O    no hydrogen  2.993  N/A
LEU 182.A N    ALA 178.A O    no hydrogen  3.032  N/A
LEU 183.A N    SER 179.A O    no hydrogen  3.114  N/A
VAL 184.A N    TYR 180.A O    no hydrogen  3.000  N/A
HIS 185.A N    ALA 181.A O    no hydrogen  3.229  N/A
MET 186.A N    LEU 182.A O    no hydrogen  3.027  N/A
MET 187.A N    LEU 183.A O    no hydrogen  2.848  N/A
ALA 188.A N    VAL 184.A O    no hydrogen  2.818  N/A
GLN 189.A N    HIS 185.A O    no hydrogen  3.091  N/A
GLN 189.A NE2  ARG 233.A O    no hydrogen  3.134  N/A
GLN 190.A N    MET 186.A O    no hydrogen  3.140  N/A
GLN 190.A NE2  PRO 235.A O    no hydrogen  3.215  N/A
GLN 190.A NE2  TYR 241.A OH   no hydrogen  2.813  N/A
CYS 191.A N    MET 187.A O    no hydrogen  2.951  N/A
CYS 191.A N    ALA 188.A O    no hydrogen  3.204  N/A
CYS 191.A SG   MET 187.A O    no hydrogen  3.546  N/A
ASP 192.A N    GLN 189.A O    no hydrogen  3.466  N/A
LEU 193.A N    ALA 188.A O    no hydrogen  2.850  N/A
GLU 194.A N    GLY 156.A O    no hydrogen  3.028  N/A
GLY 196.A N    LEU 158.A O    no hydrogen  2.700  N/A
ASP 197.A N    SER 159.A OG   no hydrogen  3.003  N/A
PHE 198.A N    PHE 35.A O     no hydrogen  2.853  N/A
VAL 199.A N    CYS 160.A O    no hydrogen  2.783  N/A
TRP 200.A N    MET 33.A O     no hydrogen  2.876  N/A
TRP 200.A NE1  GLN 164.A OE1  no hydrogen  3.005  N/A
THR 201.A N    LEU 162.A O    no hydrogen  2.915  N/A
THR 201.A OG1  GLN 161.A OE1  no hydrogen  2.951  N/A
GLY 202.A N    HIS 31.A O     no hydrogen  2.897  N/A
GLY 203.A N    GLN 164.A O    no hydrogen  2.724  N/A
ASP 204.A N    ARG 165.A O    no hydrogen  2.822  N/A
THR 205.A N    ILE 28.A O     no hydrogen  3.027  N/A
THR 205.A OG1  GLY 203.A O    no hydrogen  3.339  N/A
HIS 206.A N    CYS 167.A O    no hydrogen  2.956  N/A
HIS 206.A ND1  ASP 204.A O    no hydrogen  2.971  N/A
HIS 206.A ND1  ASP 204.A OD1  no hydrogen  2.940  N/A
LEU 207.A N    LEU 26.A O     no hydrogen  2.999  N/A
SER 209.A N    GLY 24.A O     no hydrogen  2.852  N/A
SER 209.A OG   THR 23.A O     no hydrogen  2.888  N/A
SER 209.A OG   GLY 24.A O     no hydrogen  2.921  N/A
HIS 211.A N    TYR 208.A O    no hydrogen  2.859  N/A
HIS 211.A NE2  PRO 260.A O    no hydrogen  2.725  N/A
GLN 214.A N    GLN 214.A OE1  no hydrogen  2.639  N/A
THR 215.A N    HIS 211.A O    no hydrogen  2.898  N/A
THR 215.A OG1  HIS 211.A O    no hydrogen  2.772  N/A
HIS 216.A N    MET 212.A O    no hydrogen  3.002  N/A
LEU 217.A N    ASP 213.A O    no hydrogen  2.896  N/A
GLN 218.A N    GLN 214.A O    no hydrogen  2.971  N/A
GLN 218.A NE2  THR 46.A OG1   no hydrogen  2.829  N/A
LEU 219.A N    THR 215.A O    no hydrogen  2.976  N/A
SER 220.A N    LEU 217.A O    no hydrogen  3.209  N/A
SER 220.A OG   LEU 217.A O    no hydrogen  2.614  N/A
ARG 221.A N    GLN 218.A O    no hydrogen  3.056  N/A
ARG 221.A NH1  THR 46.A O     no hydrogen  2.824  N/A
ARG 221.A NH1  PRO 255.A O    no hydrogen  2.731  N/A
ARG 224.A N    THR 45.A OG1   no hydrogen  2.952  N/A
ARG 224.A NH1  ASP 252.A O    no hydrogen  3.116  N/A
LYS 228.A N    GLU 249.A O    no hydrogen  2.811  N/A
LYS 228.A NZ   LEU 226.A O    no hydrogen  3.397  N/A
ILE 230.A N    GLU 247.A O    no hydrogen  2.710  N/A
LYS 232.A N    ASP 245.A O    no hydrogen  2.921  N/A
LYS 232.A NZ   GLU 244.A O    no hydrogen  3.048  N/A
ARG 233.A NE   ASP 245.A OD1  no hydrogen  3.015  N/A
ARG 233.A NE   ASP 245.A OD2  no hydrogen  3.312  N/A
ARG 233.A NH2  ASP 240.A O    no hydrogen  2.974  N/A
ARG 233.A NH2  ASP 245.A OD2  no hydrogen  2.892  N/A
LYS 234.A NZ   ASP 192.A OD1  no hydrogen  2.950  N/A
SER 237.A OG   ASP 240.A OD2  no hydrogen  2.935  N/A
ASP 240.A N    SER 237.A O    no hydrogen  3.004  N/A
TYR 241.A OH   GLN 189.A OE1  no hydrogen  2.690  N/A
ARG 242.A N    ASP 245.A OD2  no hydrogen  2.963  N/A
ASP 245.A N    ARG 242.A O    no hydrogen  3.004  N/A
PHE 246.A N    PHE 243.A O    no hydrogen  3.257  N/A
GLU 247.A N    ILE 230.A O    no hydrogen  2.832  N/A
GLU 249.A N    LYS 228.A O    no hydrogen  2.899  N/A
TYR 251.A OH   VAL 44.A O     no hydrogen  2.797  N/A
HIS 254.A N    THR 45.A O     no hydrogen  2.822  N/A
HIS 254.A NE2  GLU 222.A O    no hydrogen  2.785  N/A