Finding intermodel H-bonds
Finding intramodel H-bonds
Constraints relaxed by 0.4 angstroms and 20 degrees
Models used:
	#0 3byd_A.cif

H-bonds (donor, acceptor, hydrogen, D..A dist, D-H..A dist):
ILE 3.A N      ASP 1.A OD1    no hydrogen  2.948  N/A
GLN 4.A NE2    LEU 32.A O     no hydrogen  2.622  N/A
GLN 5.A N      ASP 1.A O      no hydrogen  3.153  N/A
GLN 5.A NE2    GLN 5.A O      no hydrogen  3.334  N/A
GLN 5.A NE2    ASP 9.A OD1    no hydrogen  2.790  N/A
LYS 6.A N      ALA 2.A O      no hydrogen  2.834  N/A
LEU 7.A N      ILE 3.A O      no hydrogen  3.008  N/A
ALA 8.A N      GLN 4.A O      no hydrogen  3.139  N/A
ASP 9.A N      GLN 5.A O      no hydrogen  2.910  N/A
LEU 10.A N     LYS 6.A O      no hydrogen  2.930  N/A
GLU 11.A N     LEU 7.A O      no hydrogen  2.882  N/A
LYS 12.A N     ALA 8.A O      no hydrogen  2.964  N/A
ARG 13.A N     ASP 9.A O      no hydrogen  3.022  N/A
SER 14.A N     LEU 10.A O     no hydrogen  3.032  N/A
SER 14.A OG    LEU 10.A O     no hydrogen  3.470  N/A
SER 14.A OG    GLU 11.A O     no hydrogen  2.756  N/A
GLY 15.A N     LYS 12.A O     no hydrogen  3.323  N/A
GLY 16.A N     SER 14.A OG    no hydrogen  3.229  N/A
ARG 17.A N     THR 237.A O    no hydrogen  2.797  N/A
ARG 17.A NH1   GLU 37.A OE1   no hydrogen  3.234  N/A
ARG 17.A NH1   ARG 38.A O     no hydrogen  2.885  N/A
ARG 17.A NH2   ARG 38.A O     no hydrogen  3.084  N/A
LEU 18.A N     GLU 11.A OE2   no hydrogen  2.938  N/A
GLY 19.A N     TYR 235.A O    no hydrogen  2.818  N/A
VAL 20.A N     TYR 33.A O     no hydrogen  2.842  N/A
ALA 21.A N     VAL 233.A O    no hydrogen  3.050  N/A
LEU 22.A N     THR 31.A O     no hydrogen  2.848  N/A
ILE 23.A N     VAL 231.A O    no hydrogen  2.712  N/A
ASN 24.A N     SER 29.A O     no hydrogen  2.921  N/A
THR 25.A N     PRO 229.A O    no hydrogen  3.109  N/A
THR 25.A OG1   PRO 229.A O    no hydrogen  2.578  N/A
ALA 26.A N     ASN 24.A OD1   no hydrogen  3.108  N/A
ASP 27.A N     ASN 24.A O     no hydrogen  3.398  N/A
SER 29.A N     ASP 27.A OD1   no hydrogen  3.005  N/A
SER 29.A OG    ASP 27.A OD1   no hydrogen  2.832  N/A
THR 31.A N     LEU 22.A O     no hydrogen  2.928  N/A
TYR 33.A N     VAL 20.A O     no hydrogen  2.849  N/A
TYR 33.A OH    GLU 11.A OE1   no hydrogen  2.690  N/A
ARG 34.A NE    GLU 11.A OE1   no hydrogen  3.418  N/A
ARG 34.A NE    GLU 11.A OE2   no hydrogen  2.669  N/A
ARG 34.A NH1   GLU 37.A OE2   no hydrogen  2.929  N/A
ARG 34.A NH2   GLU 11.A OE1   no hydrogen  2.910  N/A
GLU 37.A N     ARG 34.A O     no hydrogen  3.191  N/A
ARG 38.A NH1   THR 132.A O    no hydrogen  3.098  N/A
ARG 38.A NH1   THR 153.A OG1  no hydrogen  2.835  N/A
ARG 38.A NH2   THR 132.A O    no hydrogen  2.765  N/A
PHE 39.A N     THR 154.A O    no hydrogen  2.883  N/A
MET 41.A N     ASP 152.A O    no hydrogen  3.015  N/A
SER 43.A OG    SER 103.A OG   no hydrogen  3.055  N/A
THR 44.A N     MET 41.A O     no hydrogen  3.185  N/A
THR 44.A OG1   MET 41.A O     no hydrogen  2.685  N/A
THR 44.A OG1   TYR 235.A OH   no hydrogen  3.017  N/A
GLY 45.A N     CYS 42.A O     no hydrogen  3.110  N/A
LYS 46.A N     SER 43.A O     no hydrogen  2.958  N/A
LYS 46.A NZ    SER 43.A OG    no hydrogen  2.738  N/A
LYS 46.A NZ    SER 103.A O    no hydrogen  3.143  N/A
LYS 46.A NZ    SER 103.A OG   no hydrogen  3.237  N/A
LYS 46.A NZ    ASN 105.A OD1  no hydrogen  2.689  N/A
LYS 46.A NZ    GLU 139.A OE1  no hydrogen  3.410  N/A
VAL 47.A N     THR 44.A O     no hydrogen  3.308  N/A
ALA 49.A N     GLY 45.A O     no hydrogen  3.394  N/A
ALA 50.A N     LYS 46.A O     no hydrogen  2.989  N/A
ALA 51.A N     VAL 47.A O     no hydrogen  2.943  N/A
ALA 52.A N     MET 48.A O     no hydrogen  2.925  N/A
VAL 53.A N     ALA 49.A O     no hydrogen  3.100  N/A
LEU 54.A N     ALA 50.A O     no hydrogen  2.913  N/A
LYS 55.A N     ALA 51.A O     no hydrogen  2.899  N/A
LYS 55.A NZ.A  GLU 58.A OE1   no hydrogen  3.440  N/A
LYS 55.A NZ.B  GLU 58.A OE1   no hydrogen  2.747  N/A
LYS 55.A NZ.B  GLU 58.A OE2   no hydrogen  3.412  N/A
LYS 55.A NZ.B  ALA 171.A O    no hydrogen  2.773  N/A
GLN 56.A N     ALA 52.A O     no hydrogen  3.097  N/A
SER 57.A N     VAL 53.A O     no hydrogen  3.039  N/A
SER 57.A OG    LEU 54.A O     no hydrogen  2.517  N/A
GLU 58.A N     LYS 55.A O     no hydrogen  3.056  N/A
SER 59.A N     GLN 56.A O     no hydrogen  3.387  N/A
ASN 60.A N     GLN 56.A O     no hydrogen  3.123  N/A
GLU 62.A N     ASN 60.A OD1   no hydrogen  2.991  N/A
LYS 66.A N     VAL 63.A O     no hydrogen  3.123  N/A
ARG 67.A NH2   SER 88.A O     no hydrogen  2.949  N/A
LEU 68.A N     MET 90.A O     no hydrogen  2.742  N/A
LYS 71.A N     ASP 74.A OD2   no hydrogen  2.779  N/A
ASP 74.A N     LYS 71.A O     no hydrogen  2.900  N/A
LEU 75.A N     LYS 72.A O     no hydrogen  3.221  N/A
VAL 76.A N     THR 106.A OG1  no hydrogen  2.957  N/A
SER 79.A OG    VAL 76.A O     no hydrogen  2.707  N/A
SER 79.A OG    THR 106.A OG1  no hydrogen  2.676  N/A
ILE 81.A N     ASP 104.A OD2  no hydrogen  2.857  N/A
THR 82.A N     ASP 104.A OD2  no hydrogen  2.876  N/A
THR 82.A OG1   ASP 104.A OD1  no hydrogen  2.798  N/A
THR 82.A OG1   ASP 104.A OD2  no hydrogen  3.122  N/A
GLU 83.A N     SER 79.A O     no hydrogen  3.172  N/A
LYS 84.A N     ILE 81.A O     no hydrogen  3.009  N/A
HIS 85.A N     THR 82.A O     no hydrogen  3.031  N/A
HIS 85.A ND1   SER 88.A OG    no hydrogen  2.865  N/A
SER 88.A OG    HIS 85.A ND1   no hydrogen  2.865  N/A
SER 88.A OG    GLY 89.A O     no hydrogen  2.747  N/A
GLY 89.A N     HIS 85.A O     no hydrogen  2.897  N/A
MET 90.A N     LEU 68.A O     no hydrogen  2.949  N/A
THR 91.A N     GLU 94.A OE1   no hydrogen  2.996  N/A
LEU 92.A N     LYS 66.A O     no hydrogen  3.100  N/A
ALA 93.A N     VAL 64.A O     no hydrogen  3.025  N/A
GLU 94.A N     THR 91.A OG1   no hydrogen  3.216  N/A
LEU 95.A N     THR 91.A O     no hydrogen  2.822  N/A
SER 96.A N     LEU 92.A O     no hydrogen  2.870  N/A
SER 96.A OG    LEU 92.A O     no hydrogen  2.764  N/A
ALA 97.A N     ALA 93.A O     no hydrogen  2.933  N/A
ALA 98.A N     GLU 94.A O     no hydrogen  2.961  N/A
ALA 99.A N     LEU 95.A O     no hydrogen  2.853  N/A
LEU 100.A N    SER 96.A O     no hydrogen  2.922  N/A
GLN 101.A N    ALA 97.A O     no hydrogen  2.811  N/A
GLN 101.A NE2  TRP 183.A O    no hydrogen  2.994  N/A
TYR 102.A N    ALA 98.A O     no hydrogen  2.988  N/A
ASP 104.A N    ALA 98.A O     no hydrogen  3.200  N/A
ASN 105.A N    TRP 78.A O     no hydrogen  2.915  N/A
ASN 105.A ND2  VAL 77.A O     no hydrogen  2.979  N/A
THR 106.A N    SER 79.A OG    no hydrogen  3.080  N/A
THR 106.A OG1  ASP 74.A O     no hydrogen  3.496  N/A
THR 106.A OG1  SER 79.A OG    no hydrogen  2.676  N/A
ALA 107.A N    ASP 104.A OD1  no hydrogen  2.843  N/A
MET 108.A N    ASP 104.A O    no hydrogen  3.231  N/A
ASN 109.A N    ASN 105.A O    no hydrogen  2.970  N/A
ASN 109.A ND2  GLU 139.A O    no hydrogen  2.970  N/A
LYS 110.A N    THR 106.A O    no hydrogen  2.896  N/A
LYS 110.A NZ   GLU 69.A O     no hydrogen  2.847  N/A
LYS 110.A NZ   ASP 74.A OD2   no hydrogen  3.155  N/A
MET 111.A N    ALA 107.A O    no hydrogen  3.033  N/A
ILE 112.A N    MET 108.A O    no hydrogen  2.795  N/A
SER 113.A N    ASN 109.A O    no hydrogen  2.841  N/A
SER 113.A OG   ASN 109.A O    no hydrogen  3.080  N/A
TYR 114.A N    LYS 110.A O    no hydrogen  2.948  N/A
LEU 115.A N    MET 111.A O    no hydrogen  2.973  N/A
GLY 116.A N    ILE 112.A O    no hydrogen  3.066  N/A
GLY 116.A N    SER 113.A O    no hydrogen  3.183  N/A
GLY 117.A N    ILE 112.A O    no hydrogen  2.804  N/A
LYS 120.A N    GLY 117.A O    no hydrogen  2.917  N/A
LYS 120.A NZ   GLU 119.A OE2  no hydrogen  2.941  N/A
VAL 121.A N    PRO 118.A O    no hydrogen  3.064  N/A
THR 122.A N    PRO 118.A O    no hydrogen  3.283  N/A
THR 122.A OG1  LEU 135.A O    no hydrogen  3.310  N/A
ALA 123.A N    GLU 119.A O    no hydrogen  2.865  N/A
PHE 124.A N    LYS 120.A O    no hydrogen  3.018  N/A
ALA 125.A N    VAL 121.A O    no hydrogen  3.047  N/A
GLN 126.A N    THR 122.A O    no hydrogen  2.826  N/A
SER 127.A N    ALA 123.A O    no hydrogen  2.869  N/A
SER 127.A OG   PHE 124.A O    no hydrogen  2.574  N/A
ILE 128.A N    PHE 124.A O    no hydrogen  3.236  N/A
ILE 128.A N    ALA 125.A O    no hydrogen  3.040  N/A
GLY 129.A N    GLN 126.A O    no hydrogen  2.934  N/A
ASP 130.A N    ALA 125.A O    no hydrogen  3.008  N/A
THR 132.A N    ASP 130.A OD1  no hydrogen  2.945  N/A
PHE 133.A N    ASP 130.A OD1  no hydrogen  2.874  N/A
ARG 134.A N    THR 153.A O    no hydrogen  3.131  N/A
ARG 134.A NE   ASP 136.A OD2  no hydrogen  2.887  N/A
ARG 134.A NH2  ASP 136.A OD1  no hydrogen  2.938  N/A
LEU 135.A N    THR 122.A OG1  no hydrogen  3.033  N/A
ASP 136.A N    ASP 152.A OD1  no hydrogen  2.649  N/A
ARG 137.A N    ASP 152.A OD1  no hydrogen  2.971  N/A
ARG 137.A NE   ASP 152.A OD2  no hydrogen  2.720  N/A
ARG 137.A NH1  SER 144.A OG   no hydrogen  2.829  N/A
ARG 137.A NH2  SER 144.A OG   no hydrogen  2.999  N/A
ARG 137.A NH2  ASP 152.A OD2  no hydrogen  2.896  N/A
GLU 139.A N    ASN 109.A OD1  no hydrogen  2.937  N/A
LEU 142.A N    THR 138.A O    no hydrogen  2.986  N/A
ASN 143.A N    PRO 140.A O    no hydrogen  3.039  N/A
SER 144.A N    ALA 141.A O    no hydrogen  3.323  N/A
SER 144.A OG   ALA 141.A O    no hydrogen  3.402  N/A
ASP 149.A N    ILE 146.A O    no hydrogen  2.969  N/A
ARG 151.A N    ASP 149.A OD1  no hydrogen  3.080  N/A
ARG 151.A NE   ASP 149.A OD1  no hydrogen  3.138  N/A
ARG 151.A NE   ASP 149.A OD2  no hydrogen  3.055  N/A
ARG 151.A NH2  ASP 149.A OD2  no hydrogen  2.759  N/A
ASP 152.A N    ASP 136.A OD2  no hydrogen  2.901  N/A
THR 153.A OG1  LYS 150.A O    no hydrogen  2.524  N/A
THR 154.A N    PHE 39.A O     no hydrogen  3.083  N/A
THR 155.A OG1  GLY 35.A O     no hydrogen  3.524  N/A
LEU 157.A N    GLY 35.A O     no hydrogen  3.042  N/A
ALA 158.A N    THR 155.A OG1  no hydrogen  3.070  N/A
MET 159.A N    THR 155.A O    no hydrogen  2.970  N/A
ALA 160.A N    PRO 156.A O    no hydrogen  2.984  N/A
GLU 161.A N    LEU 157.A O    no hydrogen  2.866  N/A
SER 162.A N    ALA 158.A O    no hydrogen  2.945  N/A
SER 162.A OG   ASP 130.A OD2  no hydrogen  2.493  N/A
SER 162.A OG   ALA 158.A O    no hydrogen  3.258  N/A
LEU 163.A N    MET 159.A O    no hydrogen  2.864  N/A
ARG 164.A N    ALA 160.A O    no hydrogen  2.903  N/A
ARG 164.A NH1  ASP 28.A OD1   no hydrogen  2.765  N/A
ARG 164.A NH2  ASP 28.A OD1   no hydrogen  3.094  N/A
LYS 165.A N    GLU 161.A O    no hydrogen  3.058  N/A
LYS 165.A NZ   ILE 128.A O    no hydrogen  2.803  N/A
LEU 166.A N    SER 162.A O    no hydrogen  2.937  N/A
THR 167.A N    LEU 163.A O    no hydrogen  2.981  N/A
THR 167.A OG1  LEU 163.A O    no hydrogen  2.647  N/A
LEU 168.A N    ARG 164.A O    no hydrogen  2.841  N/A
GLY 169.A N    ARG 164.A O    no hydrogen  2.899  N/A
ALA 171.A N    LYS 165.A O    no hydrogen  3.308  N/A
GLY 173.A N    GLU 58.A OE2   no hydrogen  2.888  N/A
ARG 177.A N    GLY 173.A O    no hydrogen  2.852  N/A
ARG 177.A NE   GLU 174.A OE1  no hydrogen  2.874  N/A
ARG 177.A NH1  THR 167.A O    no hydrogen  2.797  N/A
ARG 177.A NH2  GLU 174.A OE1  no hydrogen  3.501  N/A
ARG 177.A NH2  GLU 174.A OE2  no hydrogen  2.856  N/A
ALA 178.A N    GLU 174.A O    no hydrogen  2.873  N/A
GLN 179.A N    GLN 175.A O    no hydrogen  3.031  N/A
LEU 180.A N    GLN 176.A O    no hydrogen  2.922  N/A
VAL 181.A N    ARG 177.A O    no hydrogen  3.030  N/A
THR 182.A N    ALA 178.A O    no hydrogen  2.994  N/A
THR 182.A OG1  ALA 178.A O    no hydrogen  3.053  N/A
TRP 183.A N    GLN 179.A O    no hydrogen  2.951  N/A
LEU 184.A N    LEU 180.A O    no hydrogen  2.946  N/A
LYS 185.A N    VAL 181.A O    no hydrogen  2.849  N/A
GLY 186.A N    THR 182.A O    no hydrogen  3.136  N/A
GLY 186.A N    TRP 183.A O    no hydrogen  3.061  N/A
ASN 187.A N    LEU 184.A O    no hydrogen  3.084  N/A
ASN 187.A ND2  THR 189.A OG1  no hydrogen  3.306  N/A
ASN 187.A ND2  ASP 206.A OD1  no hydrogen  3.019  N/A
THR 188.A N    GLN 101.A O    no hydrogen  2.988  N/A
THR 188.A OG1  GLN 101.A O    no hydrogen  2.681  N/A
THR 189.A N    ASN 187.A OD1  no hydrogen  3.383  N/A
THR 189.A OG1  ASN 187.A OD1  no hydrogen  3.129  N/A
THR 189.A OG1  THR 208.A OG1  no hydrogen  2.736  N/A
SER 193.A N    GLY 190.A O    no hydrogen  3.194  N/A
ILE 194.A N    ASP 218.A OD2  no hydrogen  2.858  N/A
ALA 196.A N    SER 193.A O    no hydrogen  3.135  N/A
GLY 197.A N    ILE 194.A O    no hydrogen  2.857  N/A
LEU 198.A N    ARG 195.A O    no hydrogen  3.155  N/A
TRP 202.A N    PRO 199.A O    no hydrogen  3.221  N/A
ALA 203.A N    TRP 223.A O    no hydrogen  2.928  N/A
GLY 205.A N    VAL 221.A O    no hydrogen  3.010  N/A
ASP 206.A N    LEU 184.A O    no hydrogen  3.253  N/A
LYS 207.A N    ILE 219.A O    no hydrogen  2.944  N/A
LYS 207.A NZ   SER 103.A OG   no hydrogen  2.917  N/A
LYS 207.A NZ   THR 208.A O    no hydrogen  2.842  N/A
THR 208.A OG1  THR 189.A OG1  no hydrogen  2.736  N/A
GLY 209.A N    ASN 217.A O    no hydrogen  2.908  N/A
GLY 211.A N    THR 215.A O    no hydrogen  2.967  N/A
ASP 212.A N    ASN 143.A O    no hydrogen  2.894  N/A
TYR 213.A N    GLN 241.A O    no hydrogen  2.823  N/A
THR 215.A N    GLY 211.A O    no hydrogen  3.186  N/A
THR 215.A N    ASP 212.A O    no hydrogen  3.306  N/A
THR 215.A OG1  ASP 212.A O    no hydrogen  2.780  N/A
THR 215.A OG1  THR 237.A OG1  no hydrogen  2.718  N/A
THR 216.A N    PHE 236.A O    no hydrogen  2.812  N/A
THR 216.A OG1  GLY 214.A O    no hydrogen  3.009  N/A
ASN 217.A N    GLY 209.A O    no hydrogen  2.742  N/A
ASN 217.A ND2  ALA 40.A O     no hydrogen  2.819  N/A
ASN 217.A ND2  MET 41.A O     no hydrogen  2.978  N/A
ASP 218.A N    THR 234.A O    no hydrogen  2.920  N/A
ILE 219.A N    LYS 207.A O    no hydrogen  2.969  N/A
ALA 220.A N    LEU 232.A O    no hydrogen  2.736  N/A
VAL 221.A N    GLY 205.A O    no hydrogen  2.883  N/A
ILE 222.A N    LEU 230.A O    no hydrogen  2.753  N/A
TRP 223.A N    ALA 203.A O    no hydrogen  2.837  N/A
LEU 230.A N    ILE 222.A O    no hydrogen  2.908  N/A
VAL 231.A N    ILE 23.A O     no hydrogen  2.929  N/A
LEU 232.A N    ALA 220.A O    no hydrogen  2.878  N/A
VAL 233.A N    ALA 21.A O     no hydrogen  2.903  N/A
THR 234.A N    ASP 218.A O    no hydrogen  2.885  N/A
THR 234.A OG1  ASP 218.A O    no hydrogen  3.392  N/A
TYR 235.A N    GLY 19.A O     no hydrogen  2.777  N/A
TYR 235.A OH   THR 44.A OG1   no hydrogen  3.017  N/A
PHE 236.A N    ASN 217.A OD1  no hydrogen  3.395  N/A
THR 237.A N    ARG 17.A O     no hydrogen  3.089  N/A
THR 237.A OG1  TYR 213.A O    no hydrogen  3.403  N/A
THR 237.A OG1  THR 215.A OG1  no hydrogen  2.718  N/A
GLN 238.A N    TYR 213.A O    no hydrogen  2.954  N/A
GLN 238.A NE2  GLY 214.A O    no hydrogen  2.964  N/A
GLN 238.A NE2  LYS 244.A O    no hydrogen  2.937  N/A
ALA 243.A N    GLN 240.A O    no hydrogen  3.037  N/A
ARG 246.A N    THR 216.A OG1  no hydrogen  3.018  N/A
VAL 249.A N    ARG 246.A O    no hydrogen  3.031  N/A
LEU 250.A N    LYS 247.A O    no hydrogen  2.967  N/A
ALA 251.A N    LYS 247.A O    no hydrogen  3.175  N/A
ALA 252.A N    GLU 248.A O    no hydrogen  2.971  N/A
ALA 253.A N    VAL 249.A O    no hydrogen  2.904  N/A
ALA 254.A N    LEU 250.A O    no hydrogen  2.896  N/A
LYS 255.A N    ALA 251.A O    no hydrogen  2.955  N/A
ILE 256.A N    ALA 252.A O    no hydrogen  2.943  N/A
VAL 257.A N    ALA 253.A O    no hydrogen  3.093  N/A
THR 258.A N    ALA 254.A O    no hydrogen  3.129  N/A
THR 258.A OG1  ALA 254.A O    no hydrogen  2.771  N/A
LEU 261.A N    THR 258.A O    no hydrogen  2.822  N/A