Finding intermodel H-bonds Finding intramodel H-bonds Constraints relaxed by 0.4 angstroms and 20 degrees Models used: #0 3vax_A.cif H-bonds (donor, acceptor, hydrogen, D..A dist, D-H..A dist): ALA 5.A N ASP 4.A OD1 no hydrogen 2.809 N/A THR 8.A OG1 VAL 11.A O no hydrogen 2.373 N/A ARG 14.A N ASP 12.A OD1 no hydrogen 2.945 N/A ARG 14.A NH1 ASP 12.A OD1 no hydrogen 3.185 N/A ARG 14.A NH2 GLU 260.A OE2 no hydrogen 2.630 N/A ALA 16.A N ASP 12.A O no hydrogen 3.008 N/A ASP 17.A N GLN 13.A O no hydrogen 2.883 N/A ILE 18.A N ARG 14.A O no hydrogen 3.293 N/A VAL 19.A N VAL 15.A O no hydrogen 3.150 N/A LEU 20.A N ALA 16.A O no hydrogen 2.917 N/A HIS 21.A N ASP 17.A O no hydrogen 2.746 N/A TRP 22.A N ILE 18.A O no hydrogen 3.097 N/A MET 23.A N VAL 19.A O no hydrogen 2.978 N/A THR 24.A N LEU 20.A O no hydrogen 3.009 N/A THR 24.A OG1 LEU 20.A O no hydrogen 3.472 N/A THR 24.A OG1 HIS 21.A O no hydrogen 3.107 N/A ALA 25.A N HIS 21.A O no hydrogen 3.074 N/A GLU 26.A N TRP 22.A O no hydrogen 2.875 N/A PHE 27.A N MET 23.A O no hydrogen 2.748 N/A GLY 28.A N THR 24.A O no hydrogen 2.582 N/A SER 32.A N GLU 35.A OE2 no hydrogen 2.867 N/A SER 32.A OG GLU 35.A OE2 no hydrogen 3.060 N/A TYR 36.A N SER 32.A O no hydrogen 3.056 N/A GLY 37.A N ARG 33.A O no hydrogen 3.199 N/A ILE 38.A N HIS 34.A O no hydrogen 3.042 N/A ARG 39.A N GLU 35.A O no hydrogen 3.247 N/A ALA 40.A N TYR 36.A O no hydrogen 2.672 N/A LYS 41.A N GLY 37.A O no hydrogen 3.028 N/A ARG 42.A N ILE 38.A O no hydrogen 3.110 N/A GLY 43.A N ARG 39.A O no hydrogen 3.021 N/A VAL 44.A N ALA 40.A O no hydrogen 2.932 N/A GLU 45.A N LYS 41.A O no hydrogen 3.084 N/A ARG 46.A N ARG 42.A O no hydrogen 2.900 N/A ALA 47.A N GLY 43.A O no hydrogen 2.913 N/A ARG 48.A N VAL 44.A O no hydrogen 2.850 N/A ARG 48.A NE GLU 45.A OE1 no hydrogen 3.154 N/A ARG 48.A NE GLU 45.A OE2 no hydrogen 3.188 N/A ARG 48.A NH1 LEU 62.A O no hydrogen 2.936 N/A ARG 48.A NH1 GLU 234.A OE2 no hydrogen 2.834 N/A ARG 48.A NH2 GLU 45.A OE1 no hydrogen 3.066 N/A ARG 48.A NH2 GLU 234.A OE1 no hydrogen 3.000 N/A GLU 49.A N GLU 45.A O no hydrogen 3.005 N/A TYR 50.A N ARG 46.A O no hydrogen 2.967 N/A TYR 50.A OH GLU 258.A OE1 no hydrogen 2.894 N/A LEU 51.A N ALA 47.A O no hydrogen 2.874 N/A ALA 52.A N ARG 48.A O no hydrogen 2.898 N/A SER 53.A N GLU 49.A O no hydrogen 3.102 N/A SER 53.A OG TYR 50.A O no hydrogen 2.566 N/A THR 54.A N TYR 50.A O no hydrogen 3.346 N/A THR 54.A N LEU 51.A O no hydrogen 3.226 N/A THR 54.A OG1 LEU 51.A O no hydrogen 2.655 N/A THR 54.A OG1 TYR 179.A OH no hydrogen 2.490 N/A VAL 55.A N ALA 52.A O no hydrogen 3.148 N/A SER 56.A N SER 53.A O no hydrogen 3.011 N/A ALA 57.A N ALA 52.A O no hydrogen 2.850 N/A GLU 58.A N GLU 61.A OE2 no hydrogen 2.679 N/A GLU 61.A N GLU 58.A O no hydrogen 2.913 N/A LEU 62.A N PRO 59.A O no hydrogen 3.242 N/A ILE 63.A N LEU 209.A O no hydrogen 2.945 N/A PHE 64.A N GLU 234.A OE2 no hydrogen 2.680 N/A THR 65.A N GLY 207.A O no hydrogen 2.841 N/A THR 65.A OG1 GLY 67.A O no hydrogen 2.937 N/A THR 65.A OG1 SER 71.A OG no hydrogen 2.736 N/A SER 66.A N GLU 70.A OE2 no hydrogen 2.622 N/A SER 66.A OG GLU 70.A OE2 no hydrogen 2.798 N/A GLY 67.A N THR 65.A OG1 no hydrogen 3.422 N/A SER 71.A N GLY 67.A O no hydrogen 2.957 N/A SER 71.A OG THR 65.A OG1 no hydrogen 2.736 N/A SER 71.A OG GLY 67.A O no hydrogen 3.272 N/A SER 71.A OG ALA 208.A O no hydrogen 2.789 N/A ASN 72.A N ALA 68.A O no hydrogen 2.744 N/A ASN 73.A N THR 69.A O no hydrogen 3.119 N/A ILE 74.A N GLU 70.A O no hydrogen 2.941 N/A ALA 75.A N SER 71.A O no hydrogen 3.003 N/A LEU 76.A N ASN 72.A O no hydrogen 2.991 N/A LEU 77.A N ASN 73.A O no hydrogen 2.908 N/A LEU 79.A N LEU 76.A O no hydrogen 3.325 N/A ALA 80.A N LEU 77.A O no hydrogen 3.109 N/A GLY 83.A N LEU 79.A O no hydrogen 3.073 N/A GLU 84.A N ALA 80.A O no hydrogen 2.968 N/A ARG 85.A N PRO 81.A O no hydrogen 2.909 N/A THR 86.A N TYR 82.A O no hydrogen 2.976 N/A THR 86.A OG1 TYR 82.A O no hydrogen 2.857 N/A ARG 88.A N GLY 83.A O no hydrogen 2.788 N/A ARG 88.A NH1 PRO 137.A O no hydrogen 2.668 N/A ARG 88.A NH2 THR 139.A O no hydrogen 2.635 N/A ARG 89.A NE GLU 84.A OE2 no hydrogen 2.752 N/A ARG 89.A NH2 GLU 84.A OE1 no hydrogen 3.240 N/A HIS 90.A ND1 THR 139.A OG1 no hydrogen 2.831 N/A HIS 90.A NE2 ASP 116.A OD2 no hydrogen 2.694 N/A ILE 91.A N GLU 114.A O no hydrogen 2.778 N/A ILE 92.A N LEU 141.A O no hydrogen 3.021 N/A THR 93.A N ASP 116.A O no hydrogen 2.791 N/A THR 93.A OG1 SER 143.A O no hydrogen 2.949 N/A SER 94.A OG GLU 97.A OE1 no hydrogen 2.602 N/A ALA 95.A N LEU 118.A O no hydrogen 2.826 N/A GLU 97.A N SER 94.A O no hydrogen 3.504 N/A VAL 101.A N HIS 98.A O no hydrogen 2.908 N/A LEU 102.A N HIS 98.A O no hydrogen 3.067 N/A GLU 103.A N LYS 99.A O no hydrogen 2.844 N/A LEU 105.A N VAL 101.A O no hydrogen 3.202 N/A GLU 106.A N LEU 102.A O no hydrogen 2.815 N/A HIS 107.A N GLU 103.A O no hydrogen 2.901 N/A LEU 108.A N PRO 104.A O no hydrogen 3.028 N/A ALA 109.A N LEU 105.A O no hydrogen 2.915 N/A GLY 110.A N GLU 106.A O no hydrogen 3.203 N/A ARG 111.A N LEU 108.A O no hydrogen 2.928 N/A ARG 111.A NH1 HIS 107.A NE2 no hydrogen 3.336 N/A PHE 113.A N LEU 108.A O no hydrogen 3.188 N/A GLU 114.A N ARG 89.A O no hydrogen 2.802 N/A ASP 116.A N ILE 91.A O no hydrogen 2.848 N/A LEU 118.A N THR 93.A O no hydrogen 2.872 N/A GLY 121.A N ALA 339.A O no hydrogen 3.412 N/A SER 123.A OG ARG 125.A O no hydrogen 3.473 N/A GLY 124.A N GLY 121.A O no hydrogen 2.924 N/A ARG 125.A N SER 123.A OG no hydrogen 3.185 N/A ARG 125.A NH1 ILE 154.A O no hydrogen 2.669 N/A ILE 126.A N GLN 155.A OE1 no hydrogen 2.902 N/A GLY 130.A N SER 127.A OG no hydrogen 3.007 N/A VAL 131.A N SER 127.A O no hydrogen 3.410 N/A VAL 131.A N VAL 128.A O no hydrogen 3.044 N/A MET 132.A N VAL 128.A O no hydrogen 2.896 N/A GLU 133.A N GLU 129.A O no hydrogen 2.766 N/A ARG 134.A N VAL 131.A O no hydrogen 2.875 N/A LEU 135.A N MET 132.A O no hydrogen 3.385 N/A ARG 136.A N THR 139.A OG1 no hydrogen 2.815 N/A ARG 136.A NE ASP 138.A OD2 no hydrogen 3.306 N/A ARG 136.A NH1 GLU 114.A OE1 no hydrogen 2.908 N/A ARG 136.A NH2 GLU 114.A OE1 no hydrogen 3.552 N/A ARG 136.A NH2 GLU 114.A OE2 no hydrogen 3.328 N/A THR 139.A N ARG 136.A O no hydrogen 3.173 N/A THR 139.A OG1 HIS 90.A ND1 no hydrogen 2.831 N/A THR 139.A OG1 ARG 136.A O no hydrogen 3.264 N/A LEU 140.A N HIS 90.A O no hydrogen 2.847 N/A VAL 142.A N TYR 170.A O no hydrogen 2.898 N/A SER 143.A N ILE 92.A O no hydrogen 2.929 N/A SER 143.A OG HIS 172.A ND1 no hydrogen 2.712 N/A LEU 144.A N HIS 172.A O no hydrogen 2.950 N/A MET 145.A N GLU 97.A OE1 no hydrogen 3.111 N/A HIS 146.A N ASP 174.A O no hydrogen 2.855 N/A HIS 146.A NE2 ASP 185.A OD2 no hydrogen 2.962 N/A ASN 148.A N VAL 153.A O no hydrogen 3.063 N/A GLY 152.A N ASN 148.A O no hydrogen 2.854 N/A VAL 153.A N THR 151.A OG1 no hydrogen 3.250 N/A ILE 154.A N HIS 292.A O no hydrogen 2.699 N/A GLN 155.A N HIS 146.A O no hydrogen 2.855 N/A GLN 155.A NE2 GLY 124.A O no hydrogen 3.195 N/A GLN 155.A NE2 VAL 153.A O no hydrogen 2.799 N/A VAL 157.A N GLN 155.A O no hydrogen 2.905 N/A LEU 160.A N PRO 156.A O no hydrogen 3.245 N/A ALA 161.A N VAL 157.A O no hydrogen 2.974 N/A GLN 162.A N ALA 158.A O no hydrogen 3.327 N/A GLN 163.A N GLU 159.A O no hydrogen 3.417 N/A LEU 164.A N LEU 160.A O no hydrogen 2.771 N/A ARG 165.A N ALA 161.A O no hydrogen 3.027 N/A ARG 165.A NH1 ARG 165.A O no hydrogen 3.147 N/A ARG 165.A NH1 GLU 216.A OE1 no hydrogen 2.992 N/A ARG 165.A NH1 GLU 216.A OE2 no hydrogen 3.053 N/A ARG 165.A NH2 GLU 216.A OE1 no hydrogen 2.501 N/A THR 167.A N LEU 164.A O no hydrogen 2.874 N/A THR 167.A OG1 LEU 164.A O no hydrogen 2.837 N/A THR 169.A N THR 167.A OG1 no hydrogen 3.193 N/A THR 169.A OG1 THR 139.A O no hydrogen 2.612 N/A TYR 170.A N LEU 140.A O no hydrogen 3.067 N/A LEU 171.A N ASP 191.A OD1 no hydrogen 2.740 N/A HIS 172.A N VAL 142.A O no hydrogen 2.820 N/A HIS 172.A ND1 SER 143.A OG no hydrogen 2.712 N/A HIS 172.A NE2 SER 194.A OG no hydrogen 2.815 N/A VAL 173.A N MET 192.A O no hydrogen 2.724 N/A ALA 175.A N SER 194.A O no hydrogen 2.946 N/A ALA 176.A N ASP 174.A OD2 no hydrogen 3.197 N/A GLY 178.A N ALA 175.A O no hydrogen 2.845 N/A TYR 179.A N ALA 175.A O no hydrogen 2.773 N/A TYR 179.A OH THR 54.A OG1 no hydrogen 2.490 N/A LYS 181.A N GLY 178.A O no hydrogen 2.923 N/A LYS 181.A NZ GLN 177.A OE1 no hydrogen 3.557 N/A LYS 181.A NZ LYS 199.A O no hydrogen 2.760 N/A VAL 182.A N GLY 178.A O no hydrogen 3.063 N/A ASP 185.A N VAL 182.A O no hydrogen 3.309 N/A LEU 186.A N PRO 183.A O no hydrogen 3.020 N/A THR 187.A N GLY 184.A O no hydrogen 3.395 N/A THR 187.A OG1 GLY 184.A O no hydrogen 2.718 N/A THR 188.A OG1 ASP 185.A O no hydrogen 2.603 N/A ILE 190.A N THR 188.A O no hydrogen 2.606 N/A MET 192.A N LEU 171.A O no hydrogen 2.878 N/A ILE 193.A N VAL 210.A O no hydrogen 3.089 N/A SER 194.A N VAL 173.A O no hydrogen 2.922 N/A SER 194.A OG HIS 172.A NE2 no hydrogen 2.815 N/A ILE 195.A N ALA 208.A O no hydrogen 2.964 N/A GLY 197.A N VAL 206.A O no hydrogen 2.960 N/A ILE 200.A N GLY 197.A O no hydrogen 3.043 N/A GLY 201.A N HIS 198.A O no hydrogen 3.341 N/A ALA 202.A N GLY 197.A O no hydrogen 3.063 N/A GLY 207.A N THR 65.A O no hydrogen 2.800 N/A ALA 208.A N ILE 195.A O no hydrogen 3.079 N/A LEU 209.A N ILE 63.A O no hydrogen 2.872 N/A VAL 210.A N ILE 193.A O no hydrogen 2.867 N/A THR 211.A N GLU 61.A O no hydrogen 2.668 N/A THR 211.A OG1 THR 211.A O no hydrogen 2.563 N/A ARG 212.A N ASP 191.A O no hydrogen 2.923 N/A ARG 212.A NE ILE 190.A O no hydrogen 2.862 N/A ARG 212.A NH1 VAL 55.A O no hydrogen 3.128 N/A ARG 212.A NH1 SER 56.A O no hydrogen 3.007 N/A ARG 212.A NH2 VAL 55.A O no hydrogen 2.716 N/A ARG 213.A N GLU 61.A OE1 no hydrogen 2.819 N/A ARG 213.A NE ASP 60.A OD2 no hydrogen 3.495 N/A ARG 213.A NH1 ASP 219.A O no hydrogen 2.999 N/A ARG 213.A NH2 ASP 60.A OD1 no hydrogen 2.608 N/A ARG 214.A N GLU 220.A O no hydrogen 2.992 N/A ARG 214.A NE ASP 191.A OD2 no hydrogen 2.931 N/A ARG 214.A NH1 THR 167.A O no hydrogen 2.786 N/A ARG 214.A NH2 THR 169.A O no hydrogen 3.060 N/A ARG 214.A NH2 ASP 191.A OD1 no hydrogen 3.068 N/A ARG 214.A NH2 ASP 191.A OD2 no hydrogen 3.393 N/A GLU 220.A N MET 217.A O no hydrogen 2.730 N/A ARG 221.A NE ASP 60.A O no hydrogen 2.963 N/A LEU 224.A N VAL 222.A O no hydrogen 2.714 N/A GLU 225.A N GLY 78.A O no hydrogen 2.765 N/A LYS 236.A N GLY 232.A O no hydrogen 3.054 N/A LEU 237.A N GLU 234.A O no hydrogen 2.887 N/A ARG 238.A NE GLU 70.A OE1 no hydrogen 2.937 N/A ARG 238.A NE GLU 70.A OE2 no hydrogen 3.048 N/A GLY 240.A N GLN 233.A OE1 no hydrogen 2.936 N/A LEU 246.A N PRO 243.A O no hydrogen 3.247 N/A ILE 247.A N PRO 243.A O no hydrogen 3.319 N/A MET 248.A N VAL 244.A O no hydrogen 3.050 N/A GLY 249.A N PRO 245.A O no hydrogen 2.940 N/A LEU 250.A N LEU 246.A O no hydrogen 2.820 N/A ALA 251.A N ILE 247.A O no hydrogen 3.074 N/A GLU 252.A N MET 248.A O no hydrogen 2.995 N/A ALA 253.A N GLY 249.A O no hydrogen 2.981 N/A ALA 254.A N LEU 250.A O no hydrogen 2.992 N/A LYS 255.A N ALA 251.A O no hydrogen 2.971 N/A ILE 256.A N GLU 252.A O no hydrogen 2.920 N/A PHE 257.A N ALA 253.A O no hydrogen 2.930 N/A GLU 258.A N ALA 254.A O no hydrogen 2.867 N/A ALA 259.A N LYS 255.A O no hydrogen 3.104 N/A GLU 260.A N ILE 256.A O no hydrogen 2.928 N/A HIS 261.A ND1 GLY 180.A O no hydrogen 3.243 N/A TRP 264.A N GLU 260.A O no hydrogen 2.948 N/A GLN 265.A N HIS 261.A O no hydrogen 2.834 N/A VAL 266.A N ALA 262.A O no hydrogen 3.129 N/A ALA 267.A N GLN 263.A O no hydrogen 3.149 N/A ALA 268.A N TRP 264.A O no hydrogen 2.948 N/A GLN 269.A N GLN 265.A O no hydrogen 3.062 N/A GLN 269.A NE2 GLN 269.A O no hydrogen 3.401 N/A ASP 270.A N VAL 266.A O no hydrogen 2.775 N/A LEU 271.A N ALA 267.A O no hydrogen 3.053 N/A ARG 272.A N ALA 268.A O no hydrogen 2.855 N/A ARG 272.A NH1 PRO 295.A O no hydrogen 2.835 N/A ARG 272.A NH1 ILE 297.A O no hydrogen 3.024 N/A ARG 272.A NH2 ILE 297.A O no hydrogen 3.158 N/A SER 273.A N GLN 269.A O no hydrogen 2.883 N/A SER 273.A OG GLN 269.A O no hydrogen 3.511 N/A ARG 274.A N ASP 270.A O no hydrogen 3.388 N/A LEU 275.A N LEU 271.A O no hydrogen 2.924 N/A LEU 276.A N ARG 272.A O no hydrogen 2.895 N/A ALA 277.A N SER 273.A O no hydrogen 3.135 N/A GLY 278.A N ARG 274.A O no hydrogen 3.275 N/A LEU 279.A N LEU 275.A O no hydrogen 2.992 N/A THR 282.A N LEU 279.A O no hydrogen 3.247 N/A THR 282.A OG1 LEU 279.A O no hydrogen 2.783 N/A SER 283.A OG THR 282.A O no hydrogen 2.528 N/A PHE 284.A N THR 282.A OG1 no hydrogen 3.327 N/A GLN 285.A N SER 301.A O no hydrogen 2.931 N/A ASN 287.A N ASN 299.A O no hydrogen 2.828 N/A ASN 287.A ND2 ASN 299.A OD1 no hydrogen 2.595 N/A ASP 289.A N SER 123.A O no hydrogen 2.816 N/A ASP 291.A N ASP 289.A OD2 no hydrogen 3.238 N/A HIS 292.A N ASP 289.A O no hydrogen 3.082 N/A VAL 294.A N GLY 152.A O no hydrogen 2.898 N/A LEU 298.A N PHE 353.A O no hydrogen 2.714 N/A ASN 299.A ND2 GLU 150.A O no hydrogen 3.209 N/A ASN 299.A ND2 THR 332.A OG1 no hydrogen 2.997 N/A LEU 300.A N LEU 351.A O no hydrogen 2.830 N/A SER 301.A N GLN 285.A O no hydrogen 2.663 N/A PHE 302.A N LYS 349.A O no hydrogen 2.890 N/A VAL 305.A N PHE 302.A O no hydrogen 2.977 N/A PHE 310.A N ASP 306.A O no hydrogen 3.015 N/A LEU 311.A N ALA 307.A O no hydrogen 3.181 N/A VAL 312.A N GLU 308.A O no hydrogen 3.152 N/A THR 313.A N ALA 309.A O no hydrogen 3.193 N/A THR 313.A OG1 ALA 309.A O no hydrogen 2.448 N/A THR 313.A OG1 PHE 310.A O no hydrogen 3.392 N/A LEU 314.A N PHE 310.A O no hydrogen 3.135 N/A LYS 315.A N LEU 311.A O no hydrogen 3.147 N/A ASP 316.A N VAL 312.A O no hydrogen 3.018 N/A LEU 317.A N THR 313.A O no hydrogen 2.738 N/A VAL 318.A N LEU 314.A O no hydrogen 3.117 N/A ALA 319.A N LYS 315.A O no hydrogen 2.975 N/A VAL 320.A N ASP 316.A O no hydrogen 3.031 N/A ALA 321.A N LEU 317.A O no hydrogen 3.144 N/A THR 322.A N ALA 319.A O no hydrogen 3.302 N/A ALA 325.A N ALA 321.A O no hydrogen 2.967 N/A SER 326.A N THR 356.A O no hydrogen 3.060 N/A SER 326.A OG THR 356.A OG1 no hydrogen 2.611 N/A SER 328.A N SER 354.A O no hydrogen 2.765 N/A SER 330.A N ARG 352.A O no hydrogen 2.994 N/A THR 332.A N SER 350.A O no hydrogen 3.003 N/A THR 332.A OG1 GLU 150.A OE2 no hydrogen 3.270 N/A VAL 336.A N PRO 333.A O no hydrogen 3.296 N/A ARG 338.A N SER 334.A O no hydrogen 3.016 N/A ALA 339.A N HIS 335.A O no hydrogen 2.999 N/A MET 340.A N LEU 337.A O no hydrogen 3.058 N/A GLY 341.A N ARG 338.A O no hydrogen 3.171 N/A LEU 342.A N LEU 337.A O no hydrogen 3.038 N/A ALA 346.A N PRO 343.A O no hydrogen 2.970 N/A ALA 347.A N PRO 343.A O no hydrogen 3.029 N/A SER 348.A N GLU 344.A O no hydrogen 3.255 N/A SER 348.A OG GLU 344.A O no hydrogen 3.187 N/A LYS 349.A N ALA 346.A O no hydrogen 2.885 N/A SER 350.A OG ALA 346.A O no hydrogen 3.541 N/A LEU 351.A N LEU 300.A O no hydrogen 2.752 N/A ARG 352.A N SER 330.A O no hydrogen 2.717 N/A ARG 352.A NE ASN 149.A O no hydrogen 2.627 N/A ARG 352.A NH2 ASN 149.A O no hydrogen 3.261 N/A PHE 353.A N LEU 298.A O no hydrogen 2.781 N/A SER 354.A N SER 328.A O no hydrogen 3.045 N/A TRP 355.A N HIS 296.A O no hydrogen 3.102 N/A TRP 355.A NE1 ALA 268.A O no hydrogen 3.241 N/A THR 356.A N SER 326.A O no hydrogen 2.929 N/A GLY 358.A N SER 324.A O no hydrogen 3.036 N/A