1AF2A

Crystal structure of cytidine deaminase complexed with uridine
Total Genus 101
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
101
sequence length
294
structure length
294
Chain Sequence
MHPRFQTAFAQLADNLQSALEPILADKYFPALLTGEQVSSLKSATGLDEDALAFALLPLAAACARTPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALAAITVNYTPCGHCRQFMNELNSGLDLRIHLPGREAHALRDYLPDAFGPKDLEIKTLLMDEQDHGYALTGDALSQAAIAAANRSHMPYSKSPSGVALECKDGRIFSGSYAENAAFNPTLPPLQGALILLNLKGYDYPDIQRAVLAEKADAPLIQWDATSATLKALGCHSIDRVLLA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Complex (hydrolase/product)
molecule keywords CYTIDINE DEAMINASE
publication title The structure of the cytidine deaminase-product complex provides evidence for efficient proton transfer and ground-state destabilization.
pubmed doi rcsb
source organism Escherichia coli
total genus 101
structure length 294
sequence length 294
ec nomenclature ec 3.5.4.5: Cytidine deaminase.
pdb deposition date 1997-03-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00383 dCMP_cyt_deam_1 Cytidine and deoxycytidylate deaminase zinc-binding region
A PF08211 dCMP_cyt_deam_2 Cytidine and deoxycytidylate deaminase zinc-binding region
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.140.10 Alpha Beta 3-Layer(aba) Sandwich Cytidine Deaminase; domain 2 Cytidine Deaminase, domain 2 1af2A01
3.40.140.10 Alpha Beta 3-Layer(aba) Sandwich Cytidine Deaminase; domain 2 Cytidine Deaminase, domain 2 1af2A02
2FR6A 3ZPGA 1WKQA 3MPZA 2D5NA 1UX1A 2P87A 1WN6A 1YSBA 2KCQA 4OCMA 4K1RA 4F7OA 1AF2A 4ZFTA 1JTKA 2O3KA 2G84A 1UWZA 4MSMA 3ZEFB 2Z3IA 4O8XA 2Z3HA 2D30A 3E1UA 4F3WA 4P9EA 4E0QA 4OCNA 2O96A 1UX0A 4G3MA 5DCAJ 1TIYA 2O7PA 4P9DA 2HVVA 5M52C 2OG4A 5GAOA 4O8XB 2O95A 2W4LA 4ILGC 4P9CA 4D10F 1R5XA 3RZVA 1WWRA 4MSQA 1RB7A 4MSJA 4LCOA 4KITC 4MSDA 1OX7A 4HRQA 4EG2A 3IJFX 4LD2A 3B8FA 4OCMB 1CTTA 2KKSA 2RPZA 4WIGA 1ALNA 4HRWA 4O8YA 3G8QA 3OJ6A 2OBCA 1R5TA 2HVWA 4BGDC 4LC5A 4ZD5A 2P8RA 2G6VA 3DH1A 4OCLA 3RZUA 4LCPA 2A8NA 3DMOA 3SBGA 2PW9A 4OCNB 1VQ2A 4WIFA 2QLCA 3EX8A 5M59B 4JXEA 2FR5A 4OWPA 1UAQA 2HXVA 1CTUA 4OCLB 4I43B 1P6OA 4NQLA 4LCNA 1Z3AA 3R2NA 4ZFRA 2ZNVA 2Z3JA 5C2OA 2B3JA 3ZPCA 1YSDA 1ZABA 1WN5A 4OWPB 2Z3GA 4QFTA 1MQ0A 1OI0A 2NYTA 2ZNRA 3OCQA 4MS7A 2NX8A 4PQTA 5CW6A 4O8YB 4ZD4A 4LD4A 2B3ZA
chains in the Genus database with same CATH superfamily
2FR6A 3VX8A 3ZPGA 1WKQA 3MPZA 2D5NA 1UX1A 2P87A 1WN6A 1YSBA 2KCQA 4OCMA 4K1RA 4F7OA 1AF2A 4ZFTA 1JTKA 1P4RA 2O3KA 2G84A 1UWZA 4EHIA 4MSMA 3ZEFB 2Z3IA 4O8XA 1PL0A 2Z3HA 2D30A 3E1UA 4F3WA 4P9EA 4E0QA 4OCNA 2O96A 1UX0A 4G3MA 5DCAJ 1TIYA 1M9NA 2O7PA 4P9DA 2HVVA 5M52C 2OG4A 5GAOA 4O8XB 2O95A 2W4LA 4ILGC 4P9CA 4D10F 1R5XA 2IU0A 4J6EA 3RZVA 1WWRA 2B1GA 4MSQA 1RB7A 1G8MA 4LCOA 4MSJA 4KITC 2B1IA 4MSDA 4A1OA 1OX7A 4HRQA 4EG2A 3IJFX 4LD2A 3B8FA 4OCMB 1CTTA 2KKSA 2RPZA 4WIGA 1ALNA 4HRWA 4O8YA 3G8QA 1PKXA 3OJ6A 2OBCA 1R5TA 2HVWA 4BGDC 4LC5A 4ZD5A 2P8RA 2G6VA 3DH1A 4OCLA 3RZUA 4LCPA 2A8NA 3DMOA 3SBGA 2PW9A 2IU3A 4OCNB 1VQ2A 4WIFA 2QLCA 4GGMX 3EX8A 5M59B 4JXEA 2FR5A 4OWPA 1UAQA 2HXVA 3ZZMA 1CTUA 4OCLB 4I43B 1VK9A 1P6OA 4NQLA 4LCNA 1Z3AA 3R2NA 4ZFRA 2ZNVA 1ZCZA 2Z3JA 5C2OA 1OZ0A 2B3JA 3ZPCA 1THZA 1YSDA 1ZABA 1WN5A 4OWPB 2Z3GA 4QFTA 1MQ0A 3BH1A 1OI0A 2NYTA 2ZNRA 3OCQA 4MS7A 2NX8A 4PQTA 5CW6A 4O8YB 4ZD4A 4LD4A 2B3ZA
chains in the Genus database with same CATH topology
2FR6A 3ZPGA 1WKQA 3MPZA 2D5NA 1UX1A 2P87A 1WN6A 1YSBA 2KCQA 4OCMA 4K1RA 4F7OA 1AF2A 4ZFTA 1JTKA 2O3KA 2G84A 1UWZA 4MSMA 3ZEFB 2Z3IA 4O8XA 2Z3HA 2D30A 3E1UA 4F3WA 4P9EA 4E0QA 4OCNA 2O96A 1UX0A 4G3MA 5DCAJ 1TIYA 2O7PA 4P9DA 2HVVA 5M52C 2OG4A 5GAOA 4O8XB 2O95A 2W4LA 4ILGC 4P9CA 4D10F 1R5XA 3RZVA 1WWRA 4MSQA 1RB7A 4MSJA 4LCOA 4KITC 4MSDA 1OX7A 4HRQA 4EG2A 3IJFX 4LD2A 3B8FA 4OCMB 1CTTA 2KKSA 2RPZA 4WIGA 1ALNA 4HRWA 4O8YA 3G8QA 3OJ6A 2OBCA 1R5TA 2HVWA 4BGDC 4LC5A 4ZD5A 2P8RA 2G6VA 3DH1A 4OCLA 3RZUA 4LCPA 2A8NA 3DMOA 3SBGA 2PW9A 4OCNB 1VQ2A 4WIFA 2QLCA 3EX8A 5M59B 4JXEA 2FR5A 4OWPA 1UAQA 2HXVA 1CTUA 4OCLB 4I43B 1P6OA 4NQLA 4LCNA 1Z3AA 3R2NA 4ZFRA 2ZNVA 2Z3JA 5C2OA 2B3JA 3ZPCA 1YSDA 1ZABA 1WN5A 4OWPB 2Z3GA 4QFTA 1MQ0A 1OI0A 2NYTA 2ZNRA 3OCQA 4MS7A 2NX8A 4PQTA 5CW6A 4O8YB 4ZD4A 4LD4A 2B3ZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2FR6 A;  3ZPG A;  1WKQ A;  3MPZ A;  2D5N A;  1UX1 A;  2P87 A;  1WN6 A;  1YSB A;  2KCQ A;  4OCM A;  4K1R A;  4F7O A;  1AF2 A;  4ZFT A;  1JTK A;  2O3K A;  2G84 A;  1UWZ A;  4MSM A;  3ZEF B;  2Z3I A;  4O8X A;  2Z3H A;  2D30 A;  3E1U A;  4F3W A;  4P9E A;  4E0Q A;  4OCN A;  2O96 A;  1UX0 A;  4G3M A;  5DCA J;  1TIY A;  2O7P A;  4P9D A;  2HVV A;  5M52 C;  2OG4 A;  5GAO A;  4O8X B;  2O95 A;  2W4L A;  4ILG C;  4P9C A;  4D10 F;  1R5X A;  3RZV A;  1WWR A;  4MSQ A;  1RB7 A;  4MSJ A;  4LCO A;  4KIT C;  4MSD A;  1OX7 A;  4HRQ A;  4EG2 A;  3IJF X;  4LD2 A;  3B8F A;  4OCM B;  1CTT A;  2KKS A;  2RPZ A;  4WIG A;  1ALN A;  4HRW A;  4O8Y A;  3G8Q A;  3OJ6 A;  2OBC A;  1R5T A;  2HVW A;  4BGD C;  4LC5 A;  4ZD5 A;  2P8R A;  2G6V A;  3DH1 A;  4OCL A;  3RZU A;  4LCP A;  2A8N A;  3DMO A;  3SBG A;  2PW9 A;  4OCN B;  1VQ2 A;  4WIF A;  2QLC A;  3EX8 A;  5M59 B;  4JXE A;  2FR5 A;  4OWP A;  1UAQ A;  2HXV A;  1CTU A;  4OCL B;  4I43 B;  1P6O A;  4NQL A;  4LCN A;  1Z3A A;  3R2N A;  4ZFR A;  2ZNV A;  2Z3J A;  5C2O A;  2B3J A;  3ZPC A;  1YSD A;  1ZAB A;  1WN5 A;  4OWP B;  2Z3G A;  4QFT A;  1MQ0 A;  1OI0 A;  2NYT A;  2ZNR A;  3OCQ A;  4MS7 A;  2NX8 A;  4PQT A;  5CW6 A;  4O8Y B;  4ZD4 A;  4LD4 A;  2B3Z A; 
#chains in the Genus database with same CATH topology
 2FR6 A;  3VX8 A;  3ZPG A;  1WKQ A;  3MPZ A;  2D5N A;  1UX1 A;  2P87 A;  1WN6 A;  1YSB A;  2KCQ A;  4OCM A;  4K1R A;  4F7O A;  1AF2 A;  4ZFT A;  1JTK A;  1P4R A;  2O3K A;  2G84 A;  1UWZ A;  4EHI A;  4MSM A;  3ZEF B;  2Z3I A;  4O8X A;  1PL0 A;  2Z3H A;  2D30 A;  3E1U A;  4F3W A;  4P9E A;  4E0Q A;  4OCN A;  2O96 A;  1UX0 A;  4G3M A;  5DCA J;  1TIY A;  1M9N A;  2O7P A;  4P9D A;  2HVV A;  5M52 C;  2OG4 A;  5GAO A;  4O8X B;  2O95 A;  2W4L A;  4ILG C;  4P9C A;  4D10 F;  1R5X A;  2IU0 A;  4J6E A;  3RZV A;  1WWR A;  2B1G A;  4MSQ A;  1RB7 A;  1G8M A;  4LCO A;  4MSJ A;  4KIT C;  2B1I A;  4MSD A;  4A1O A;  1OX7 A;  4HRQ A;  4EG2 A;  3IJF X;  4LD2 A;  3B8F A;  4OCM B;  1CTT A;  2KKS A;  2RPZ A;  4WIG A;  1ALN A;  4HRW A;  4O8Y A;  3G8Q A;  1PKX A;  3OJ6 A;  2OBC A;  1R5T A;  2HVW A;  4BGD C;  4LC5 A;  4ZD5 A;  2P8R A;  2G6V A;  3DH1 A;  4OCL A;  3RZU A;  4LCP A;  2A8N A;  3DMO A;  3SBG A;  2PW9 A;  2IU3 A;  4OCN B;  1VQ2 A;  4WIF A;  2QLC A;  4GGM X;  3EX8 A;  5M59 B;  4JXE A;  2FR5 A;  4OWP A;  1UAQ A;  2HXV A;  3ZZM A;  1CTU A;  4OCL B;  4I43 B;  1VK9 A;  1P6O A;  4NQL A;  4LCN A;  1Z3A A;  3R2N A;  4ZFR A;  2ZNV A;  1ZCZ A;  2Z3J A;  5C2O A;  1OZ0 A;  2B3J A;  3ZPC A;  1THZ A;  1YSD A;  1ZAB A;  1WN5 A;  4OWP B;  2Z3G A;  4QFT A;  1MQ0 A;  3BH1 A;  1OI0 A;  2NYT A;  2ZNR A;  3OCQ A;  4MS7 A;  2NX8 A;  4PQT A;  5CW6 A;  4O8Y B;  4ZD4 A;  4LD4 A;  2B3Z A; 
#chains in the Genus database with same CATH homology
 2FR6 A;  3ZPG A;  1WKQ A;  3MPZ A;  2D5N A;  1UX1 A;  2P87 A;  1WN6 A;  1YSB A;  2KCQ A;  4OCM A;  4K1R A;  4F7O A;  1AF2 A;  4ZFT A;  1JTK A;  2O3K A;  2G84 A;  1UWZ A;  4MSM A;  3ZEF B;  2Z3I A;  4O8X A;  2Z3H A;  2D30 A;  3E1U A;  4F3W A;  4P9E A;  4E0Q A;  4OCN A;  2O96 A;  1UX0 A;  4G3M A;  5DCA J;  1TIY A;  2O7P A;  4P9D A;  2HVV A;  5M52 C;  2OG4 A;  5GAO A;  4O8X B;  2O95 A;  2W4L A;  4ILG C;  4P9C A;  4D10 F;  1R5X A;  3RZV A;  1WWR A;  4MSQ A;  1RB7 A;  4MSJ A;  4LCO A;  4KIT C;  4MSD A;  1OX7 A;  4HRQ A;  4EG2 A;  3IJF X;  4LD2 A;  3B8F A;  4OCM B;  1CTT A;  2KKS A;  2RPZ A;  4WIG A;  1ALN A;  4HRW A;  4O8Y A;  3G8Q A;  3OJ6 A;  2OBC A;  1R5T A;  2HVW A;  4BGD C;  4LC5 A;  4ZD5 A;  2P8R A;  2G6V A;  3DH1 A;  4OCL A;  3RZU A;  4LCP A;  2A8N A;  3DMO A;  3SBG A;  2PW9 A;  4OCN B;  1VQ2 A;  4WIF A;  2QLC A;  3EX8 A;  5M59 B;  4JXE A;  2FR5 A;  4OWP A;  1UAQ A;  2HXV A;  1CTU A;  4OCL B;  4I43 B;  1P6O A;  4NQL A;  4LCN A;  1Z3A A;  3R2N A;  4ZFR A;  2ZNV A;  2Z3J A;  5C2O A;  2B3J A;  3ZPC A;  1YSD A;  1ZAB A;  1WN5 A;  4OWP B;  2Z3G A;  4QFT A;  1MQ0 A;  1OI0 A;  2NYT A;  2ZNR A;  3OCQ A;  4MS7 A;  2NX8 A;  4PQT A;  5CW6 A;  4O8Y B;  4ZD4 A;  4LD4 A;  2B3Z A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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