1AGQA

Glial cell-derived neurotrophic factor from rat
Total Genus 13
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
13
sequence length
97
structure length
91
Chain Sequence
NRGCVLTAIHLNVTDLGLGYETKEELIFRYCSGSCEAAETMYDKILKNLSRSRVGQACCRPVAFDDDLSFLDDSLVYHILRKHSAKRCGCI
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Growth factor
molecule keywords GLIAL CELL-DERIVED NEUROTROPHIC FACTOR
publication title X-ray structure of glial cell-derived neurotrophic factor at 1.9 A resolution and implications for receptor binding.
pubmed doi rcsb
source organism Rattus norvegicus
total genus 13
structure length 91
sequence length 97
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 1997-03-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00019 TGF_beta Transforming growth factor beta like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.90.10 Mainly Beta Ribbon Cystine Knot Cytokines, subunit B Cystine-knot cytokines 1agqA00
4MQWB 1WQ9B 1MJVA 2QJAA 4MQWA 3P9WA 1WQ9A 3E07A 3SEKB 2VWEA 5BQEA 1FZVA 2ASKA 1WWWV 4LXRJ 4UHZA 1KTZA 1B8MB 1BMPA 2GYZA 4MIDA 2R52A 5BPUA 2QCQA 3V6BA 4KXZA 2R53A 5HI5A 5HI4A 1NYUB 5HHDA 1AGQA 2ARVA 1XWDB 1AOCA 1NT3A 4MPLA 4HQUA 1XWDA 2QJBA 3V2AA 2GNNA 3QB4A 5HI3A 2GYRA 2ARPA 1B8KA 1JPYA 1M4UL 1QFWB 2B0UA 2FJHV 4XPJA 3BK3A 1QFWA 5HK5E 5HHCA 3S1KV 1MKGA 5HHXA 1BETA 1TZHV 2TGIA 1MKKA 4HQXA 4EDXV 2KD3A 5BQBA 1BTGA 4YCGC 3JVFA 5F3HI 3BDYV 1QTYR 5BQ8B 1B8MA 5BQ8A 1LX5A 1REUA 1HRPB 1TGJA 1VPFA 3BUKA 3FUBB 4UHYA 5FV1V 1FL7B 2XV7A 5BQ8D 2XACA 3KFDA 4EAXA 1SG1A 2PJYA 5HHVA 3MJKA 1NYSB 1TZIV 3B4VA 4QCIC 1FLTV 4EC7A 2QR0C 2VXSA 3EO1C 1PDGA 4EDWV 4KZNA 3RJRA 1E9JA 1DZ7A 5E4GA 2P6AA 1BNDB 1S4YB 2GH0C 4HSAA 1CZ8V 3IJ2A 5BQCA 4GLNE 1TFGA 4AY9B 1HRPA 4HR9A 2QJ9A 1FL7A 1HCNB 2H64A 1RV6V 1HCNA 4UI2B 4QHUC 3MJGA 4YCIC 1LXIA 3HH2A 5FV2V 1M4UA 1BJ1V 2C7WA 3QTKA 4KV5A 2X1XE 5F3BC 5AEJA 2GOOA 4WPBA 1TGKA 1HD4A 1HCFA 3EVSB 1KATW 4GLSE 5BQEB 4UI1A 5JZ7A 1B98A 2X1WA 1VPPV 4EFVA 1KLAA 1WAQA 1BNDA 1SGFB 2QCWA 4UI0A 4ZFFC 3BMPA 1WQ8A 4BV4L 2H62A 1KLCA 2V5EB 4QAFC 4ZBNA 1ES7A 4LXSJ 4AY9A 3S1BV 5HK5A 4X1JA 1ZKZA 2VPFA 1REWA 4FAOA 2FJGV 2IFGE 2BHKA 4N1DA
chains in the Genus database with same CATH superfamily
4MQWB 1WQ9B 1MJVA 2QJAA 4MQWA 3P9WA 1WQ9A 3E07A 3SEKB 2VWEA 5BQEA 1FZVA 2ASKA 1WWWV 4LXRJ 4UHZA 1KTZA 1B8MB 1BMPA 2GYZA 4MIDA 2R52A 5BPUA 2QCQA 3V6BA 4KXZA 2R53A 5HI5A 5HI4A 1NYUB 5HHDA 1AGQA 2ARVA 1XWDB 1AOCA 1NT3A 4MPLA 4HQUA 1XWDA 2QJBA 3V2AA 2GNNA 3QB4A 5HI3A 2GYRA 2ARPA 1B8KA 1JPYA 1M4UL 1QFWB 2B0UA 2FJHV 4XPJA 3BK3A 1QFWA 5HK5E 5HHCA 3S1KV 1MKGA 5HHXA 1BETA 1TZHV 2TGIA 1MKKA 4HQXA 4EDXV 2KD3A 5BQBA 1BTGA 4YCGC 3JVFA 5F3HI 3BDYV 1QTYR 5BQ8B 1B8MA 5BQ8A 1LX5A 1REUA 1HRPB 1TGJA 1VPFA 3BUKA 3FUBB 4UHYA 5FV1V 1FL7B 2XV7A 5BQ8D 2XACA 3KFDA 4EAXA 1SG1A 2PJYA 5HHVA 3MJKA 1NYSB 1TZIV 3B4VA 4QCIC 1FLTV 4EC7A 2QR0C 2VXSA 3EO1C 1PDGA 4EDWV 4KZNA 3RJRA 1E9JA 1DZ7A 5E4GA 2P6AA 1BNDB 1S4YB 2GH0C 4HSAA 1CZ8V 3IJ2A 5BQCA 4GLNE 1TFGA 4AY9B 1HRPA 4HR9A 2QJ9A 1FL7A 1HCNB 2H64A 1RV6V 1HCNA 4UI2B 4QHUC 3MJGA 4YCIC 1LXIA 3HH2A 5FV2V 1M4UA 1BJ1V 2C7WA 3QTKA 4KV5A 2X1XE 5F3BC 5AEJA 2GOOA 4WPBA 1TGKA 1HD4A 1HCFA 3EVSB 1KATW 4GLSE 5BQEB 4UI1A 5JZ7A 1B98A 2X1WA 1VPPV 4EFVA 1KLAA 1WAQA 1BNDA 1SGFB 2QCWA 4UI0A 4ZFFC 3BMPA 1WQ8A 4BV4L 2H62A 1KLCA 2V5EB 4QAFC 4ZBNA 1ES7A 4LXSJ 4AY9A 3S1BV 5HK5A 4X1JA 1ZKZA 2VPFA 1REWA 4FAOA 2FJGV 2IFGE 2BHKA 4N1DA
chains in the Genus database with same CATH topology
4MQWB 1WQ9B 1MJVA 2QJAA 4MQWA 3P9WA 1WQ9A 3E07A 3SEKB 2VWEA 5BQEA 1FZVA 2ASKA 1WWWV 4LXRJ 4UHZA 1KTZA 1B8MB 1BMPA 2GYZA 4MIDA 2R52A 5BPUA 2QCQA 3V6BA 4KXZA 2R53A 5HI5A 5HI4A 1NYUB 5HHDA 1AGQA 2ARVA 1XWDB 1AOCA 1NT3A 4MPLA 4HQUA 1XWDA 2QJBA 3V2AA 2GNNA 3QB4A 5HI3A 2GYRA 2ARPA 1B8KA 1JPYA 1M4UL 1QFWB 2B0UA 2FJHV 4XPJA 3BK3A 1QFWA 5HK5E 5HHCA 3S1KV 1MKGA 5HHXA 1BETA 1TZHV 2TGIA 1MKKA 4HQXA 4EDXV 2KD3A 5BQBA 1BTGA 4YCGC 3JVFA 5F3HI 3BDYV 1QTYR 5BQ8B 1B8MA 5BQ8A 1LX5A 1REUA 1HRPB 1TGJA 1VPFA 3BUKA 3FUBB 4UHYA 5FV1V 1FL7B 2XV7A 5BQ8D 2XACA 3KFDA 4EAXA 1SG1A 2PJYA 5HHVA 3MJKA 1NYSB 1TZIV 3B4VA 4QCIC 1FLTV 4EC7A 2QR0C 2VXSA 3EO1C 1PDGA 4EDWV 4KZNA 3RJRA 1E9JA 1DZ7A 5E4GA 2P6AA 1BNDB 1S4YB 2GH0C 4HSAA 1CZ8V 3IJ2A 5BQCA 4GLNE 1TFGA 4AY9B 1HRPA 4HR9A 2QJ9A 1FL7A 1HCNB 2H64A 1RV6V 1HCNA 4UI2B 4QHUC 3MJGA 4YCIC 1LXIA 3HH2A 5FV2V 1M4UA 1BJ1V 2C7WA 3QTKA 4KV5A 2X1XE 5F3BC 5AEJA 2GOOA 4WPBA 1TGKA 1HD4A 1HCFA 3EVSB 1KATW 4GLSE 5BQEB 4UI1A 5JZ7A 1B98A 2X1WA 1VPPV 4EFVA 1KLAA 1WAQA 1BNDA 1SGFB 2QCWA 4UI0A 4ZFFC 3BMPA 1WQ8A 4BV4L 2H62A 1KLCA 2V5EB 4QAFC 4ZBNA 1ES7A 4LXSJ 4AY9A 3S1BV 5HK5A 4X1JA 1ZKZA 2VPFA 1REWA 4FAOA 2FJGV 2IFGE 2BHKA 4N1DA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4MQW B;  1WQ9 B;  1MJV A;  2QJA A;  4MQW A;  3P9W A;  1WQ9 A;  3E07 A;  3SEK B;  2VWE A;  5BQE A;  1FZV A;  2ASK A;  1WWW V;  4LXR J;  4UHZ A;  1KTZ A;  1B8M B;  1BMP A;  2GYZ A;  4MID A;  2R52 A;  5BPU A;  2QCQ A;  3V6B A;  4KXZ A;  2R53 A;  5HI5 A;  5HI4 A;  1NYU B;  5HHD A;  1AGQ A;  2ARV A;  1XWD B;  1AOC A;  1NT3 A;  4MPL A;  4HQU A;  1XWD A;  2QJB A;  3V2A A;  2GNN A;  3QB4 A;  5HI3 A;  2GYR A;  2ARP A;  1B8K A;  1JPY A;  1M4U L;  1QFW B;  2B0U A;  2FJH V;  4XPJ A;  3BK3 A;  1QFW A;  5HK5 E;  5HHC A;  3S1K V;  1MKG A;  5HHX A;  1BET A;  1TZH V;  2TGI A;  1MKK A;  4HQX A;  4EDX V;  2KD3 A;  5BQB A;  1BTG A;  4YCG C;  3JVF A;  5F3H I;  3BDY V;  1QTY R;  5BQ8 B;  1B8M A;  5BQ8 A;  1LX5 A;  1REU A;  1HRP B;  1TGJ A;  1VPF A;  3BUK A;  3FUB B;  4UHY A;  5FV1 V;  1FL7 B;  2XV7 A;  5BQ8 D;  2XAC A;  3KFD A;  4EAX A;  1SG1 A;  2PJY A;  5HHV A;  3MJK A;  1NYS B;  1TZI V;  3B4V A;  4QCI C;  1FLT V;  4EC7 A;  2QR0 C;  2VXS A;  3EO1 C;  1PDG A;  4EDW V;  4KZN A;  3RJR A;  1E9J A;  1DZ7 A;  5E4G A;  2P6A A;  1BND B;  1S4Y B;  2GH0 C;  4HSA A;  1CZ8 V;  3IJ2 A;  5BQC A;  4GLN E;  1TFG A;  4AY9 B;  1HRP A;  4HR9 A;  2QJ9 A;  1FL7 A;  1HCN B;  2H64 A;  1RV6 V;  1HCN A;  4UI2 B;  4QHU C;  3MJG A;  4YCI C;  1LXI A;  3HH2 A;  5FV2 V;  1M4U A;  1BJ1 V;  2C7W A;  3QTK A;  4KV5 A;  2X1X E;  5F3B C;  5AEJ A;  2GOO A;  4WPB A;  1TGK A;  1HD4 A;  1HCF A;  3EVS B;  1KAT W;  4GLS E;  5BQE B;  4UI1 A;  5JZ7 A;  1B98 A;  2X1W A;  1VPP V;  4EFV A;  1KLA A;  1WAQ A;  1BND A;  1SGF B;  2QCW A;  4UI0 A;  4ZFF C;  3BMP A;  1WQ8 A;  4BV4 L;  2H62 A;  1KLC A;  2V5E B;  4QAF C;  4ZBN A;  1ES7 A;  4LXS J;  4AY9 A;  3S1B V;  5HK5 A;  4X1J A;  1ZKZ A;  2VPF A;  1REW A;  4FAO A;  2FJG V;  2IFG E;  2BHK A;  4N1D A; 
#chains in the Genus database with same CATH topology
 4MQW B;  1WQ9 B;  1MJV A;  2QJA A;  4MQW A;  3P9W A;  1WQ9 A;  3E07 A;  3SEK B;  2VWE A;  5BQE A;  1FZV A;  2ASK A;  1WWW V;  4LXR J;  4UHZ A;  1KTZ A;  1B8M B;  1BMP A;  2GYZ A;  4MID A;  2R52 A;  5BPU A;  2QCQ A;  3V6B A;  4KXZ A;  2R53 A;  5HI5 A;  5HI4 A;  1NYU B;  5HHD A;  1AGQ A;  2ARV A;  1XWD B;  1AOC A;  1NT3 A;  4MPL A;  4HQU A;  1XWD A;  2QJB A;  3V2A A;  2GNN A;  3QB4 A;  5HI3 A;  2GYR A;  2ARP A;  1B8K A;  1JPY A;  1M4U L;  1QFW B;  2B0U A;  2FJH V;  4XPJ A;  3BK3 A;  1QFW A;  5HK5 E;  5HHC A;  3S1K V;  1MKG A;  5HHX A;  1BET A;  1TZH V;  2TGI A;  1MKK A;  4HQX A;  4EDX V;  2KD3 A;  5BQB A;  1BTG A;  4YCG C;  3JVF A;  5F3H I;  3BDY V;  1QTY R;  5BQ8 B;  1B8M A;  5BQ8 A;  1LX5 A;  1REU A;  1HRP B;  1TGJ A;  1VPF A;  3BUK A;  3FUB B;  4UHY A;  5FV1 V;  1FL7 B;  2XV7 A;  5BQ8 D;  2XAC A;  3KFD A;  4EAX A;  1SG1 A;  2PJY A;  5HHV A;  3MJK A;  1NYS B;  1TZI V;  3B4V A;  4QCI C;  1FLT V;  4EC7 A;  2QR0 C;  2VXS A;  3EO1 C;  1PDG A;  4EDW V;  4KZN A;  3RJR A;  1E9J A;  1DZ7 A;  5E4G A;  2P6A A;  1BND B;  1S4Y B;  2GH0 C;  4HSA A;  1CZ8 V;  3IJ2 A;  5BQC A;  4GLN E;  1TFG A;  4AY9 B;  1HRP A;  4HR9 A;  2QJ9 A;  1FL7 A;  1HCN B;  2H64 A;  1RV6 V;  1HCN A;  4UI2 B;  4QHU C;  3MJG A;  4YCI C;  1LXI A;  3HH2 A;  5FV2 V;  1M4U A;  1BJ1 V;  2C7W A;  3QTK A;  4KV5 A;  2X1X E;  5F3B C;  5AEJ A;  2GOO A;  4WPB A;  1TGK A;  1HD4 A;  1HCF A;  3EVS B;  1KAT W;  4GLS E;  5BQE B;  4UI1 A;  5JZ7 A;  1B98 A;  2X1W A;  1VPP V;  4EFV A;  1KLA A;  1WAQ A;  1BND A;  1SGF B;  2QCW A;  4UI0 A;  4ZFF C;  3BMP A;  1WQ8 A;  4BV4 L;  2H62 A;  1KLC A;  2V5E B;  4QAF C;  4ZBN A;  1ES7 A;  4LXS J;  4AY9 A;  3S1B V;  5HK5 A;  4X1J A;  1ZKZ A;  2VPF A;  1REW A;  4FAO A;  2FJG V;  2IFG E;  2BHK A;  4N1D A; 
#chains in the Genus database with same CATH homology
 4MQW B;  1WQ9 B;  1MJV A;  2QJA A;  4MQW A;  3P9W A;  1WQ9 A;  3E07 A;  3SEK B;  2VWE A;  5BQE A;  1FZV A;  2ASK A;  1WWW V;  4LXR J;  4UHZ A;  1KTZ A;  1B8M B;  1BMP A;  2GYZ A;  4MID A;  2R52 A;  5BPU A;  2QCQ A;  3V6B A;  4KXZ A;  2R53 A;  5HI5 A;  5HI4 A;  1NYU B;  5HHD A;  1AGQ A;  2ARV A;  1XWD B;  1AOC A;  1NT3 A;  4MPL A;  4HQU A;  1XWD A;  2QJB A;  3V2A A;  2GNN A;  3QB4 A;  5HI3 A;  2GYR A;  2ARP A;  1B8K A;  1JPY A;  1M4U L;  1QFW B;  2B0U A;  2FJH V;  4XPJ A;  3BK3 A;  1QFW A;  5HK5 E;  5HHC A;  3S1K V;  1MKG A;  5HHX A;  1BET A;  1TZH V;  2TGI A;  1MKK A;  4HQX A;  4EDX V;  2KD3 A;  5BQB A;  1BTG A;  4YCG C;  3JVF A;  5F3H I;  3BDY V;  1QTY R;  5BQ8 B;  1B8M A;  5BQ8 A;  1LX5 A;  1REU A;  1HRP B;  1TGJ A;  1VPF A;  3BUK A;  3FUB B;  4UHY A;  5FV1 V;  1FL7 B;  2XV7 A;  5BQ8 D;  2XAC A;  3KFD A;  4EAX A;  1SG1 A;  2PJY A;  5HHV A;  3MJK A;  1NYS B;  1TZI V;  3B4V A;  4QCI C;  1FLT V;  4EC7 A;  2QR0 C;  2VXS A;  3EO1 C;  1PDG A;  4EDW V;  4KZN A;  3RJR A;  1E9J A;  1DZ7 A;  5E4G A;  2P6A A;  1BND B;  1S4Y B;  2GH0 C;  4HSA A;  1CZ8 V;  3IJ2 A;  5BQC A;  4GLN E;  1TFG A;  4AY9 B;  1HRP A;  4HR9 A;  2QJ9 A;  1FL7 A;  1HCN B;  2H64 A;  1RV6 V;  1HCN A;  4UI2 B;  4QHU C;  3MJG A;  4YCI C;  1LXI A;  3HH2 A;  5FV2 V;  1M4U A;  1BJ1 V;  2C7W A;  3QTK A;  4KV5 A;  2X1X E;  5F3B C;  5AEJ A;  2GOO A;  4WPB A;  1TGK A;  1HD4 A;  1HCF A;  3EVS B;  1KAT W;  4GLS E;  5BQE B;  4UI1 A;  5JZ7 A;  1B98 A;  2X1W A;  1VPP V;  4EFV A;  1KLA A;  1WAQ A;  1BND A;  1SGF B;  2QCW A;  4UI0 A;  4ZFF C;  3BMP A;  1WQ8 A;  4BV4 L;  2H62 A;  1KLC A;  2V5E B;  4QAF C;  4ZBN A;  1ES7 A;  4LXS J;  4AY9 A;  3S1B V;  5HK5 A;  4X1J A;  1ZKZ A;  2VPF A;  1REW A;  4FAO A;  2FJG V;  2IFG E;  2BHK A;  4N1D A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...