1AHQA

Recombinant actophorin
Total Genus 35
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
133
structure length
133
Chain Sequence
GIAVSDDCVQKFNELKLGHQHRYVTFKMNASNTEVVVEHVGGPNATYEDFKSQLPERDCRYAIFDYEFQVDGGQRNKITFILWAPDSAPIKSKMMYTSTKDSIKKKLVGIQVEVQATDAAEISEDAVSERAKK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Actin binding protein
molecule keywords ACTOPHORIN
publication title Crystal structure of the actin-binding protein actophorin from Acanthamoeba.
pubmed doi rcsb
source organism Acanthamoeba castellanii
total genus 35
structure length 133
sequence length 133
ec nomenclature
pdb deposition date 1997-04-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00241 Cofilin_ADF Cofilin/tropomyosin-type actin-binding protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 1ahqA00
1CFYA 2LXXA 3EGXA 2NUTB 3A5MS 4LIZA 4CBWG 5KYWA 2FGHA 2NUPB 2VACA 4S10C 3EFOB 1AHQA 4Z94G 4CBUG 3TU5B 2HD7A 1C0GS 5KYNA 1X67A 5HVKB 2FH1A 1C0FS 1T2LA 3EGDA 1P8XA 3FG7A 1RGIG 1TMWA 5HVKD 1AK7A 1M2VB 1NLVG 5KYXA 2W0IA 1SVYA 1QPVA 4PKIG 2MP4A 2FH3A 2VIKA 1T3YA 2NUPA 3L50A 1JHWA 2KVKA 3Q2BA 1J72A 1F7SA 1SVQA 2FF3A 3CJBG 1NMDG 3EG9B 1HQZ1 1WNJA 2VILA 5A1MA 2L72A 3A5NS 4BEX1 1T44G 1UDMA 2FH4A 1T3XA 1P8ZG 5KYUA 1D0NA 1DEJS 1M2OA 3CJCG 1SVRA 3FG6A 3EH1A 1PD0A 1PD1A 1M2VA 3DAWB 2NUTA 1AK6A 1NM1G 3A5LS 1NPHA 5KYYB 4KEDA 4PKHB 2FH2A 2LLFA 5DD2A 1MDUA 3FFKA 2I2QA 5FAFA 2MV2A 1EQYS 3EFOA 2XFAA 1WFSA 1D4XG 4PKGG 3FFNA 2MOTA 1CNUA 3EGDB 3CIPG 2XF1A 3EGXB 4KEFA 3EH2A 2FF6G 5KYXB 1COFA 1ESVS 1KCQA 5FAEA 1V6FA 1M4JA 5L6WC 5KYWB 5KYYA 2LJ8A 1Q8XA 5IVUA 1Q8GA 1TVJA 1VKKA 3A5OS 1H1VG 1VFQA 3CI5G 1YAGG 4KEEA 3EG9A 2D8BA 1PCXA 1YVNG 2QTVA 4CBXG 1WM4A 4JD2H 5KYUB
chains in the Genus database with same CATH superfamily
1CFYA 2LXXA 3EGXA 2NUTB 3A5MS 4LIZA 4CBWG 5KYWA 2FGHA 2NUPB 2VACA 4S10C 3EFOB 1AHQA 4Z94G 4CBUG 3TU5B 2HD7A 1C0GS 5KYNA 1X67A 5HVKB 2FH1A 1C0FS 1T2LA 3EGDA 1P8XA 3FG7A 1RGIG 1TMWA 5HVKD 1AK7A 1M2VB 1NLVG 5KYXA 2W0IA 1SVYA 1QPVA 4PKIG 2MP4A 2FH3A 2VIKA 1T3YA 2NUPA 3L50A 1JHWA 2KVKA 3Q2BA 1J72A 1F7SA 1SVQA 2FF3A 3CJBG 1NMDG 3EG9B 1HQZ1 1WNJA 2VILA 5A1MA 2L72A 3A5NS 4BEX1 1T44G 1UDMA 2FH4A 1T3XA 1P8ZG 5KYUA 1D0NA 1DEJS 1M2OA 3CJCG 1SVRA 3FG6A 3EH1A 1PD0A 1PD1A 1M2VA 3DAWB 2NUTA 1AK6A 1NM1G 3A5LS 1NPHA 5KYYB 4KEDA 4PKHB 2FH2A 2LLFA 5DD2A 1MDUA 3FFKA 2I2QA 5FAFA 2MV2A 1EQYS 3EFOA 2XFAA 1WFSA 1D4XG 4PKGG 3FFNA 2MOTA 1CNUA 3EGDB 3CIPG 2XF1A 3EGXB 4KEFA 3EH2A 2FF6G 5KYXB 1COFA 1ESVS 1KCQA 5FAEA 1V6FA 1M4JA 3DA7A 5L6WC 5KYWB 5KYYA 2LJ8A 1Q8XA 5IVUA 1Q8GA 1TVJA 1VKKA 3A5OS 1H1VG 1VFQA 3CI5G 1YAGG 4KEEA 3EG9A 2D8BA 1PCXA 1YVNG 2QTVA 4CBXG 1WM4A 4JD2H 5KYUB
chains in the Genus database with same CATH topology
1CFYA 2LXXA 3EGXA 2NUTB 3A5MS 4LIZA 4CBWG 5KYWA 2FGHA 2NUPB 2VACA 4S10C 3EFOB 1AHQA 4Z94G 4CBUG 3TU5B 2HD7A 1C0GS 5KYNA 1X67A 5HVKB 2FH1A 1C0FS 1T2LA 3EGDA 1P8XA 3FG7A 1RGIG 1TMWA 5HVKD 1AK7A 1M2VB 1NLVG 5KYXA 2W0IA 1SVYA 1QPVA 4PKIG 2MP4A 2FH3A 2VIKA 1T3YA 2NUPA 3L50A 1JHWA 2KVKA 3Q2BA 1J72A 1F7SA 1SVQA 2FF3A 3CJBG 1NMDG 3EG9B 1HQZ1 1WNJA 2VILA 5A1MA 2L72A 3A5NS 4BEX1 1T44G 1UDMA 2FH4A 1T3XA 1P8ZG 5KYUA 1D0NA 1DEJS 1M2OA 3CJCG 1SVRA 3FG6A 3EH1A 1PD0A 1PD1A 1M2VA 3DAWB 2NUTA 1AK6A 1NM1G 3A5LS 1NPHA 5KYYB 4KEDA 4PKHB 2FH2A 2LLFA 5DD2A 1MDUA 3FFKA 2I2QA 5FAFA 2MV2A 1EQYS 3EFOA 2XFAA 1WFSA 1D4XG 4PKGG 3FFNA 2MOTA 1CNUA 3EGDB 3CIPG 2XF1A 3EGXB 4KEFA 3EH2A 2FF6G 5KYXB 1COFA 1ESVS 1KCQA 5FAEA 1V6FA 1M4JA 3DA7A 5L6WC 5KYWB 5KYYA 2LJ8A 1Q8XA 5IVUA 1Q8GA 1TVJA 1VKKA 3A5OS 1H1VG 1VFQA 3CI5G 1YAGG 4KEEA 3EG9A 2D8BA 1PCXA 1YVNG 2QTVA 4CBXG 1WM4A 4JD2H 5KYUB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1CFY A;  2LXX A;  3EGX A;  2NUT B;  3A5M S;  4LIZ A;  4CBW G;  5KYW A;  2FGH A;  2NUP B;  2VAC A;  4S10 C;  3EFO B;  1AHQ A;  4Z94 G;  4CBU G;  3TU5 B;  2HD7 A;  1C0G S;  5KYN A;  1X67 A;  5HVK B;  2FH1 A;  1C0F S;  1T2L A;  3EGD A;  1P8X A;  3FG7 A;  1RGI G;  1TMW A;  5HVK D;  1AK7 A;  1M2V B;  1NLV G;  5KYX A;  2W0I A;  1SVY A;  1QPV A;  4PKI G;  2MP4 A;  2FH3 A;  2VIK A;  1T3Y A;  2NUP A;  3L50 A;  1JHW A;  2KVK A;  3Q2B A;  1J72 A;  1F7S A;  1SVQ A;  2FF3 A;  3CJB G;  1NMD G;  3EG9 B;  1HQZ 1;  1WNJ A;  2VIL A;  5A1M A;  2L72 A;  3A5N S;  4BEX 1;  1T44 G;  1UDM A;  2FH4 A;  1T3X A;  1P8Z G;  5KYU A;  1D0N A;  1DEJ S;  1M2O A;  3CJC G;  1SVR A;  3FG6 A;  3EH1 A;  1PD0 A;  1PD1 A;  1M2V A;  3DAW B;  2NUT A;  1AK6 A;  1NM1 G;  3A5L S;  1NPH A;  5KYY B;  4KED A;  4PKH B;  2FH2 A;  2LLF A;  5DD2 A;  1MDU A;  3FFK A;  2I2Q A;  5FAF A;  2MV2 A;  1EQY S;  3EFO A;  2XFA A;  1WFS A;  1D4X G;  4PKG G;  3FFN A;  2MOT A;  1CNU A;  3EGD B;  3CIP G;  2XF1 A;  3EGX B;  4KEF A;  3EH2 A;  2FF6 G;  5KYX B;  1COF A;  1ESV S;  1KCQ A;  5FAE A;  1V6F A;  1M4J A;  5L6W C;  5KYW B;  5KYY A;  2LJ8 A;  1Q8X A;  5IVU A;  1Q8G A;  1TVJ A;  1VKK A;  3A5O S;  1H1V G;  1VFQ A;  3CI5 G;  1YAG G;  4KEE A;  3EG9 A;  2D8B A;  1PCX A;  1YVN G;  2QTV A;  4CBX G;  1WM4 A;  4JD2 H;  5KYU B; 
#chains in the Genus database with same CATH topology
 1CFY A;  2LXX A;  3EGX A;  2NUT B;  3A5M S;  4LIZ A;  4CBW G;  5KYW A;  2FGH A;  2NUP B;  2VAC A;  4S10 C;  3EFO B;  1AHQ A;  4Z94 G;  4CBU G;  3TU5 B;  2HD7 A;  1C0G S;  5KYN A;  1X67 A;  5HVK B;  2FH1 A;  1C0F S;  1T2L A;  3EGD A;  1P8X A;  3FG7 A;  1RGI G;  1TMW A;  5HVK D;  1AK7 A;  1M2V B;  1NLV G;  5KYX A;  2W0I A;  1SVY A;  1QPV A;  4PKI G;  2MP4 A;  2FH3 A;  2VIK A;  1T3Y A;  2NUP A;  3L50 A;  1JHW A;  2KVK A;  3Q2B A;  1J72 A;  1F7S A;  1SVQ A;  2FF3 A;  3CJB G;  1NMD G;  3EG9 B;  1HQZ 1;  1WNJ A;  2VIL A;  5A1M A;  2L72 A;  3A5N S;  4BEX 1;  1T44 G;  1UDM A;  2FH4 A;  1T3X A;  1P8Z G;  5KYU A;  1D0N A;  1DEJ S;  1M2O A;  3CJC G;  1SVR A;  3FG6 A;  3EH1 A;  1PD0 A;  1PD1 A;  1M2V A;  3DAW B;  2NUT A;  1AK6 A;  1NM1 G;  3A5L S;  1NPH A;  5KYY B;  4KED A;  4PKH B;  2FH2 A;  2LLF A;  5DD2 A;  1MDU A;  3FFK A;  2I2Q A;  5FAF A;  2MV2 A;  1EQY S;  3EFO A;  2XFA A;  1WFS A;  1D4X G;  4PKG G;  3FFN A;  2MOT A;  1CNU A;  3EGD B;  3CIP G;  2XF1 A;  3EGX B;  4KEF A;  3EH2 A;  2FF6 G;  5KYX B;  1COF A;  1ESV S;  1KCQ A;  5FAE A;  1V6F A;  1M4J A;  3DA7 A;  5L6W C;  5KYW B;  5KYY A;  2LJ8 A;  1Q8X A;  5IVU A;  1Q8G A;  1TVJ A;  1VKK A;  3A5O S;  1H1V G;  1VFQ A;  3CI5 G;  1YAG G;  4KEE A;  3EG9 A;  2D8B A;  1PCX A;  1YVN G;  2QTV A;  4CBX G;  1WM4 A;  4JD2 H;  5KYU B; 
#chains in the Genus database with same CATH homology
 1CFY A;  2LXX A;  3EGX A;  2NUT B;  3A5M S;  4LIZ A;  4CBW G;  5KYW A;  2FGH A;  2NUP B;  2VAC A;  4S10 C;  3EFO B;  1AHQ A;  4Z94 G;  4CBU G;  3TU5 B;  2HD7 A;  1C0G S;  5KYN A;  1X67 A;  5HVK B;  2FH1 A;  1C0F S;  1T2L A;  3EGD A;  1P8X A;  3FG7 A;  1RGI G;  1TMW A;  5HVK D;  1AK7 A;  1M2V B;  1NLV G;  5KYX A;  2W0I A;  1SVY A;  1QPV A;  4PKI G;  2MP4 A;  2FH3 A;  2VIK A;  1T3Y A;  2NUP A;  3L50 A;  1JHW A;  2KVK A;  3Q2B A;  1J72 A;  1F7S A;  1SVQ A;  2FF3 A;  3CJB G;  1NMD G;  3EG9 B;  1HQZ 1;  1WNJ A;  2VIL A;  5A1M A;  2L72 A;  3A5N S;  4BEX 1;  1T44 G;  1UDM A;  2FH4 A;  1T3X A;  1P8Z G;  5KYU A;  1D0N A;  1DEJ S;  1M2O A;  3CJC G;  1SVR A;  3FG6 A;  3EH1 A;  1PD0 A;  1PD1 A;  1M2V A;  3DAW B;  2NUT A;  1AK6 A;  1NM1 G;  3A5L S;  1NPH A;  5KYY B;  4KED A;  4PKH B;  2FH2 A;  2LLF A;  5DD2 A;  1MDU A;  3FFK A;  2I2Q A;  5FAF A;  2MV2 A;  1EQY S;  3EFO A;  2XFA A;  1WFS A;  1D4X G;  4PKG G;  3FFN A;  2MOT A;  1CNU A;  3EGD B;  3CIP G;  2XF1 A;  3EGX B;  4KEF A;  3EH2 A;  2FF6 G;  5KYX B;  1COF A;  1ESV S;  1KCQ A;  5FAE A;  1V6F A;  1M4J A;  3DA7 A;  5L6W C;  5KYW B;  5KYY A;  2LJ8 A;  1Q8X A;  5IVU A;  1Q8G A;  1TVJ A;  1VKK A;  3A5O S;  1H1V G;  1VFQ A;  3CI5 G;  1YAG G;  4KEE A;  3EG9 A;  2D8B A;  1PCX A;  1YVN G;  2QTV A;  4CBX G;  1WM4 A;  4JD2 H;  5KYU B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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