1AJDA

Three-dimensional structure of the d153g mutant of e. coli alkaline phosphatase: a mutant with weaker magnesium binding and increased catalytic activity
Total Genus 153
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
153
Knots found
sequence length
449
structure length
449
Chain Sequence
TPEMPVLENRAAQGDITAPGGARRLTGDQTAALRDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKKTGKPDYVTDSAASATAWSTGVKTYNGALGVDIHEKDHPTILEMAKAAGLATGNVSTAELQGATPAALVAHVTSRKCYGPSATSEKCPGNALEKGGKGSITEQLLNARADVTLGGGAKTFAETATAGEWQGKTLREQAEARGYQLVSDAASLNSVTEANQQKPLLGLFADGNMPVRWLGPKATYHGNIDKPAVTCTPNPQRNDSVPTLAQMTDKAIELLSKNEKGFFLQVEGASIDKQDHAANPCGQIGETVDLDEAVQRALEFAKKEGNTLVIVTADHAHASQIVAPDTKAPGLTQALNTKDGAVMVMSYGNSEEDSQEHTGSQLRIAAYGPHAANVVGLTDQTDLFYTMKAALGLK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Non specific mono-esterase
source organism Escherichia coli
publication title Crystallographic analysis of reversible metal binding observed in a mutant (Asp153-->Gly) of Escherichia coli alkaline phosphatase.
pubmed doi rcsb
molecule keywords ALKALINE PHOSPHATASE INTERMEDIATE II OF HOLO ENZYME
total genus 153
structure length 449
sequence length 449
chains with identical sequence B
other databases KnotProt 2.0: S +31
ec nomenclature ec 3.1.3.1: Alkaline phosphatase.
pdb deposition date 1995-08-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00245 Alk_phosphatase Alkaline phosphatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 1ajdA00
4YR1A 1ELZA 3TWZA 1HJKA 1KHNA 3NKRA 3NVLA 3NKPA 4CXSA 4GTYA 5L0KA 4CYRA 1ED8A 4LQYA 1EW2A 3KD8A 4UPIA 1FSUA 1O98A 4UPKA 3SZYA 1Y6VA 3CMRA 3BDGB 2ZKTA 3UN5A 3T02A 1ALJA 1N2KA 2IUCA 3M8YA 4KM4A 1ZEBA 1URAA 1ZEFA 1E1ZP 4KAYA 1E33P 3MK2A 3WBHA 2XR9A 1KH5A 3NKOA 1KHKA 2RH6A 5INHA 2W8DA 3M8WA 5L0EA 1KHJA 1KH4A 3MK0A 4MY4A 1AJBA 5AJ9A 5KXAA 2VQRA 4B56A 3M8ZA 2GSOA 3UO0A 3NKQA 2QZUA 3BDFA 4QAXA 3LXQA 4LREA 1HDHA 4GTWA 3TG0A 5HRTA 4LR7A 4ZG6A 2D1GA 2W5VA 2W5SA 1ALKA 4CXKA 3T01A 2IUCB 4UORA 5LIAA 3MK1A 2W5WA 2W5XA 1K7HA 2W5TA 2W5RA 3IGZB 3IGYB 3TX0A 1N2LA 4ZG7A 3NKMA 4TN0A 5DLWA 3SZZA 2W8SA 5EGHA 4UPHA 1EI6A 5L0BA 2GSUA 4LRDA 1SHQA 1ALHA 1KH7A 2G9YA 1ALIA 2IFYA 3DYCA 4UOOA 4KAVA 4CXUA 3IDDA 3B5QA 4LRAA 5DLVA 2GLQA 4N7TA 5EGEA 5K4PA 4KJGA 4UOPA 4LRBA 1P49A 4LRCA 3Q3QA 5IJQA 1AUKA 5IJSA 3DPCA 3M7VA 3UN3A 3NKNA 3A52A 4GTZA 1KHLA 1ZEDA 1ELYA 1EW8A 1E3CP 1AJAA 3OT9A 4LR9A 5LQQA 4MHXA 4KJDA 4FDIA 5LRNA 4GTXA 1B8JA 1ELXA 3E2DA 1Y7AA 2GA3A 1E2SP 3WAWA 5TJ3A 3BDHA 1EJJA 1URBA 4UPLA 2GSNA 1EW9A 4LRFA 1SHNA 4FDJA 3T00A 1EQJA 3BDGA 4LR2A 2XRGA 3WAXA 5DLTA 3WAYA 1ANIA 4NWJA 3UNYA 4CYSA 1AJDA 4NWXA 4ZGAA 1ED9A 4LR8A 2ANHA 1ANJA 1HQAA 5C66A 2X98A 1AJCA 5LRMA 4MIVA 3UN2A 3WAVA 2W5QA 4ZG9A 3ED4A 5GRRA 1O99A 5GOVA 1KH9A
chains in the Genus database with same CATH superfamily
4YR1A 1ELZA 3TWZA 1HJKA 1KHNA 3NKRA 3NVLA 3NKPA 4CXSA 4GTYA 5L0KA 4CYRA 1ED8A 4LQYA 1EW2A 3KD8A 4UPIA 1FSUA 1O98A 4UPKA 3SZYA 1Y6VA 3CMRA 3BDGB 2ZKTA 3UN5A 3T02A 1ALJA 1N2KA 2IUCA 3M8YA 4KM4A 1ZEBA 1URAA 1ZEFA 1E1ZP 4KAYA 1E33P 3MK2A 3WBHA 2XR9A 1KH5A 3NKOA 1KHKA 2RH6A 5INHA 2W8DA 3M8WA 5L0EA 1KHJA 1KH4A 3MK0A 4MY4A 1AJBA 5AJ9A 5KXAA 2VQRA 4B56A 3M8ZA 2GSOA 3UO0A 3NKQA 2QZUA 3BDFA 4QAXA 3LXQA 4LREA 1HDHA 4GTWA 3TG0A 5HRTA 4LR7A 4ZG6A 2D1GA 2W5VA 2W5SA 1ALKA 4CXKA 3T01A 2IUCB 4UORA 5LIAA 3MK1A 2W5WA 2W5XA 1K7HA 2W5TA 2W5RA 3IGZB 3IGYB 3TX0A 1N2LA 4ZG7A 3NKMA 4TN0A 5DLWA 3SZZA 2W8SA 5EGHA 4UPHA 1EI6A 5L0BA 2GSUA 4LRDA 1SHQA 1ALHA 1KH7A 2G9YA 1ALIA 2IFYA 3DYCA 4UOOA 4KAVA 4CXUA 3IDDA 3B5QA 4LRAA 5DLVA 2GLQA 4N7TA 5EGEA 5K4PA 4KJGA 4UOPA 4LRBA 1P49A 4LRCA 3Q3QA 5IJQA 1AUKA 5IJSA 3DPCA 3M7VA 3UN3A 3NKNA 3A52A 4GTZA 1KHLA 1ZEDA 1ELYA 1EW8A 1E3CP 1AJAA 3OT9A 4LR9A 5LQQA 4MHXA 4KJDA 4FDIA 5LRNA 4GTXA 1B8JA 1ELXA 3E2DA 1Y7AA 2GA3A 1E2SP 3WAWA 5TJ3A 3BDHA 1EJJA 1URBA 4UPLA 2GSNA 1EW9A 4LRFA 1SHNA 4FDJA 3T00A 1EQJA 3BDGA 4LR2A 2XRGA 3WAXA 5DLTA 3WAYA 1ANIA 4NWJA 3UNYA 4CYSA 1AJDA 4NWXA 4ZGAA 1ED9A 4LR8A 2ANHA 1ANJA 1HQAA 5C66A 2X98A 1AJCA 5LRMA 4MIVA 3UN2A 3WAVA 2W5QA 4ZG9A 3ED4A 5GRRA 1O99A 5GOVA 1KH9A
chains in the Genus database with same CATH topology
4YR1A 1ELZA 3TWZA 1HJKA 1KHNA 3NKRA 3NVLA 3NKPA 4CXSA 4GTYA 5L0KA 4CYRA 1ED8A 4LQYA 1EW2A 3KD8A 4UPIA 1FSUA 1O98A 4UPKA 3SZYA 1Y6VA 3CMRA 3BDGB 2ZKTA 3UN5A 3T02A 1ALJA 1N2KA 2IUCA 3M8YA 4KM4A 1ZEBA 1URAA 1ZEFA 1E1ZP 4KAYA 1E33P 3MK2A 3WBHA 2XR9A 1KH5A 3NKOA 1KHKA 2RH6A 5INHA 2W8DA 3M8WA 5L0EA 1KHJA 1KH4A 3MK0A 4MY4A 1AJBA 5AJ9A 5KXAA 2VQRA 4B56A 3M8ZA 2GSOA 3UO0A 3NKQA 2QZUA 3BDFA 4QAXA 3LXQA 4LREA 1HDHA 4GTWA 3TG0A 5HRTA 4LR7A 4ZG6A 2D1GA 2W5VA 2W5SA 1ALKA 4CXKA 3T01A 2IUCB 4UORA 5LIAA 3MK1A 2W5WA 2W5XA 1K7HA 2W5TA 2W5RA 3IGZB 3IGYB 3TX0A 1N2LA 4ZG7A 3NKMA 4TN0A 5DLWA 3SZZA 2W8SA 5EGHA 4UPHA 1EI6A 5L0BA 2GSUA 4LRDA 1SHQA 1ALHA 1KH7A 2G9YA 1ALIA 2IFYA 3DYCA 4UOOA 4KAVA 4CXUA 3IDDA 3B5QA 4LRAA 5DLVA 2GLQA 4N7TA 5EGEA 5K4PA 4KJGA 4UOPA 4LRBA 1P49A 4LRCA 3Q3QA 5IJQA 1AUKA 5IJSA 3DPCA 3M7VA 3UN3A 3NKNA 3A52A 4GTZA 1KHLA 1ZEDA 1ELYA 1EW8A 1E3CP 1AJAA 3OT9A 4LR9A 5LQQA 4MHXA 4KJDA 4FDIA 5LRNA 4GTXA 1B8JA 1ELXA 3E2DA 1Y7AA 2GA3A 1E2SP 3WAWA 5TJ3A 3BDHA 1EJJA 1URBA 4UPLA 2GSNA 1EW9A 4LRFA 1SHNA 4FDJA 3T00A 1EQJA 3BDGA 4LR2A 2XRGA 3WAXA 5DLTA 3WAYA 1ANIA 4NWJA 3UNYA 4CYSA 1AJDA 4NWXA 4ZGAA 1ED9A 4LR8A 2ANHA 1ANJA 1HQAA 5C66A 2X98A 1AJCA 5LRMA 4MIVA 3UN2A 3WAVA 2W5QA 4ZG9A 3ED4A 5GRRA 1O99A 5GOVA 1KH9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4YR1 A;  1ELZ A;  3TWZ A;  1HJK A;  1KHN A;  3NKR A;  3NVL A;  3NKP A;  4CXS A;  4GTY A;  5L0K A;  4CYR A;  1ED8 A;  4LQY A;  1EW2 A;  3KD8 A;  4UPI A;  1FSU A;  1O98 A;  4UPK A;  3SZY A;  1Y6V A;  3CMR A;  3BDG B;  2ZKT A;  3UN5 A;  3T02 A;  1ALJ A;  1N2K A;  2IUC A;  3M8Y A;  4KM4 A;  1ZEB A;  1URA A;  1ZEF A;  1E1Z P;  4KAY A;  1E33 P;  3MK2 A;  3WBH A;  2XR9 A;  1KH5 A;  3NKO A;  1KHK A;  2RH6 A;  5INH A;  2W8D A;  3M8W A;  5L0E A;  1KHJ A;  1KH4 A;  3MK0 A;  4MY4 A;  1AJB A;  5AJ9 A;  5KXA A;  2VQR A;  4B56 A;  3M8Z A;  2GSO A;  3UO0 A;  3NKQ A;  2QZU A;  3BDF A;  4QAX A;  3LXQ A;  4LRE A;  1HDH A;  4GTW A;  3TG0 A;  5HRT A;  4LR7 A;  4ZG6 A;  2D1G A;  2W5V A;  2W5S A;  1ALK A;  4CXK A;  3T01 A;  2IUC B;  4UOR A;  5LIA A;  3MK1 A;  2W5W A;  2W5X A;  1K7H A;  2W5T A;  2W5R A;  3IGZ B;  3IGY B;  3TX0 A;  1N2L A;  4ZG7 A;  3NKM A;  4TN0 A;  5DLW A;  3SZZ A;  2W8S A;  5EGH A;  4UPH A;  1EI6 A;  5L0B A;  2GSU A;  4LRD A;  1SHQ A;  1ALH A;  1KH7 A;  2G9Y A;  1ALI A;  2IFY A;  3DYC A;  4UOO A;  4KAV A;  4CXU A;  3IDD A;  3B5Q A;  4LRA A;  5DLV A;  2GLQ A;  4N7T A;  5EGE A;  5K4P A;  4KJG A;  4UOP A;  4LRB A;  1P49 A;  4LRC A;  3Q3Q A;  5IJQ A;  1AUK A;  5IJS A;  3DPC A;  3M7V A;  3UN3 A;  3NKN A;  3A52 A;  4GTZ A;  1KHL A;  1ZED A;  1ELY A;  1EW8 A;  1E3C P;  1AJA A;  3OT9 A;  4LR9 A;  5LQQ A;  4MHX A;  4KJD A;  4FDI A;  5LRN A;  4GTX A;  1B8J A;  1ELX A;  3E2D A;  1Y7A A;  2GA3 A;  1E2S P;  3WAW A;  5TJ3 A;  3BDH A;  1EJJ A;  1URB A;  4UPL A;  2GSN A;  1EW9 A;  4LRF A;  1SHN A;  4FDJ A;  3T00 A;  1EQJ A;  3BDG A;  4LR2 A;  2XRG A;  3WAX A;  5DLT A;  3WAY A;  1ANI A;  4NWJ A;  3UNY A;  4CYS A;  1AJD A;  4NWX A;  4ZGA A;  1ED9 A;  4LR8 A;  2ANH A;  1ANJ A;  1HQA A;  5C66 A;  2X98 A;  1AJC A;  5LRM A;  4MIV A;  3UN2 A;  3WAV A;  2W5Q A;  4ZG9 A;  3ED4 A;  5GRR A;  1O99 A;  5GOV A;  1KH9 A; 
#chains in the Genus database with same CATH topology
 4YR1 A;  1ELZ A;  3TWZ A;  1HJK A;  1KHN A;  3NKR A;  3NVL A;  3NKP A;  4CXS A;  4GTY A;  5L0K A;  4CYR A;  1ED8 A;  4LQY A;  1EW2 A;  3KD8 A;  4UPI A;  1FSU A;  1O98 A;  4UPK A;  3SZY A;  1Y6V A;  3CMR A;  3BDG B;  2ZKT A;  3UN5 A;  3T02 A;  1ALJ A;  1N2K A;  2IUC A;  3M8Y A;  4KM4 A;  1ZEB A;  1URA A;  1ZEF A;  1E1Z P;  4KAY A;  1E33 P;  3MK2 A;  3WBH A;  2XR9 A;  1KH5 A;  3NKO A;  1KHK A;  2RH6 A;  5INH A;  2W8D A;  3M8W A;  5L0E A;  1KHJ A;  1KH4 A;  3MK0 A;  4MY4 A;  1AJB A;  5AJ9 A;  5KXA A;  2VQR A;  4B56 A;  3M8Z A;  2GSO A;  3UO0 A;  3NKQ A;  2QZU A;  3BDF A;  4QAX A;  3LXQ A;  4LRE A;  1HDH A;  4GTW A;  3TG0 A;  5HRT A;  4LR7 A;  4ZG6 A;  2D1G A;  2W5V A;  2W5S A;  1ALK A;  4CXK A;  3T01 A;  2IUC B;  4UOR A;  5LIA A;  3MK1 A;  2W5W A;  2W5X A;  1K7H A;  2W5T A;  2W5R A;  3IGZ B;  3IGY B;  3TX0 A;  1N2L A;  4ZG7 A;  3NKM A;  4TN0 A;  5DLW A;  3SZZ A;  2W8S A;  5EGH A;  4UPH A;  1EI6 A;  5L0B A;  2GSU A;  4LRD A;  1SHQ A;  1ALH A;  1KH7 A;  2G9Y A;  1ALI A;  2IFY A;  3DYC A;  4UOO A;  4KAV A;  4CXU A;  3IDD A;  3B5Q A;  4LRA A;  5DLV A;  2GLQ A;  4N7T A;  5EGE A;  5K4P A;  4KJG A;  4UOP A;  4LRB A;  1P49 A;  4LRC A;  3Q3Q A;  5IJQ A;  1AUK A;  5IJS A;  3DPC A;  3M7V A;  3UN3 A;  3NKN A;  3A52 A;  4GTZ A;  1KHL A;  1ZED A;  1ELY A;  1EW8 A;  1E3C P;  1AJA A;  3OT9 A;  4LR9 A;  5LQQ A;  4MHX A;  4KJD A;  4FDI A;  5LRN A;  4GTX A;  1B8J A;  1ELX A;  3E2D A;  1Y7A A;  2GA3 A;  1E2S P;  3WAW A;  5TJ3 A;  3BDH A;  1EJJ A;  1URB A;  4UPL A;  2GSN A;  1EW9 A;  4LRF A;  1SHN A;  4FDJ A;  3T00 A;  1EQJ A;  3BDG A;  4LR2 A;  2XRG A;  3WAX A;  5DLT A;  3WAY A;  1ANI A;  4NWJ A;  3UNY A;  4CYS A;  1AJD A;  4NWX A;  4ZGA A;  1ED9 A;  4LR8 A;  2ANH A;  1ANJ A;  1HQA A;  5C66 A;  2X98 A;  1AJC A;  5LRM A;  4MIV A;  3UN2 A;  3WAV A;  2W5Q A;  4ZG9 A;  3ED4 A;  5GRR A;  1O99 A;  5GOV A;  1KH9 A; 
#chains in the Genus database with same CATH homology
 4YR1 A;  1ELZ A;  3TWZ A;  1HJK A;  1KHN A;  3NKR A;  3NVL A;  3NKP A;  4CXS A;  4GTY A;  5L0K A;  4CYR A;  1ED8 A;  4LQY A;  1EW2 A;  3KD8 A;  4UPI A;  1FSU A;  1O98 A;  4UPK A;  3SZY A;  1Y6V A;  3CMR A;  3BDG B;  2ZKT A;  3UN5 A;  3T02 A;  1ALJ A;  1N2K A;  2IUC A;  3M8Y A;  4KM4 A;  1ZEB A;  1URA A;  1ZEF A;  1E1Z P;  4KAY A;  1E33 P;  3MK2 A;  3WBH A;  2XR9 A;  1KH5 A;  3NKO A;  1KHK A;  2RH6 A;  5INH A;  2W8D A;  3M8W A;  5L0E A;  1KHJ A;  1KH4 A;  3MK0 A;  4MY4 A;  1AJB A;  5AJ9 A;  5KXA A;  2VQR A;  4B56 A;  3M8Z A;  2GSO A;  3UO0 A;  3NKQ A;  2QZU A;  3BDF A;  4QAX A;  3LXQ A;  4LRE A;  1HDH A;  4GTW A;  3TG0 A;  5HRT A;  4LR7 A;  4ZG6 A;  2D1G A;  2W5V A;  2W5S A;  1ALK A;  4CXK A;  3T01 A;  2IUC B;  4UOR A;  5LIA A;  3MK1 A;  2W5W A;  2W5X A;  1K7H A;  2W5T A;  2W5R A;  3IGZ B;  3IGY B;  3TX0 A;  1N2L A;  4ZG7 A;  3NKM A;  4TN0 A;  5DLW A;  3SZZ A;  2W8S A;  5EGH A;  4UPH A;  1EI6 A;  5L0B A;  2GSU A;  4LRD A;  1SHQ A;  1ALH A;  1KH7 A;  2G9Y A;  1ALI A;  2IFY A;  3DYC A;  4UOO A;  4KAV A;  4CXU A;  3IDD A;  3B5Q A;  4LRA A;  5DLV A;  2GLQ A;  4N7T A;  5EGE A;  5K4P A;  4KJG A;  4UOP A;  4LRB A;  1P49 A;  4LRC A;  3Q3Q A;  5IJQ A;  1AUK A;  5IJS A;  3DPC A;  3M7V A;  3UN3 A;  3NKN A;  3A52 A;  4GTZ A;  1KHL A;  1ZED A;  1ELY A;  1EW8 A;  1E3C P;  1AJA A;  3OT9 A;  4LR9 A;  5LQQ A;  4MHX A;  4KJD A;  4FDI A;  5LRN A;  4GTX A;  1B8J A;  1ELX A;  3E2D A;  1Y7A A;  2GA3 A;  1E2S P;  3WAW A;  5TJ3 A;  3BDH A;  1EJJ A;  1URB A;  4UPL A;  2GSN A;  1EW9 A;  4LRF A;  1SHN A;  4FDJ A;  3T00 A;  1EQJ A;  3BDG A;  4LR2 A;  2XRG A;  3WAX A;  5DLT A;  3WAY A;  1ANI A;  4NWJ A;  3UNY A;  4CYS A;  1AJD A;  4NWX A;  4ZGA A;  1ED9 A;  4LR8 A;  2ANH A;  1ANJ A;  1HQA A;  5C66 A;  2X98 A;  1AJC A;  5LRM A;  4MIV A;  3UN2 A;  3WAV A;  2W5Q A;  4ZG9 A;  3ED4 A;  5GRR A;  1O99 A;  5GOV A;  1KH9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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