1AJDA

Three-dimensional structure of the d153g mutant of e. coli alkaline phosphatase: a mutant with weaker magnesium binding and increased catalytic activity
Total Genus 153
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
153
Knots found
sequence length
449
structure length
449
Chain Sequence
TPEMPVLENRAAQGDITAPGGARRLTGDQTAALRDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKKTGKPDYVTDSAASATAWSTGVKTYNGALGVDIHEKDHPTILEMAKAAGLATGNVSTAELQGATPAALVAHVTSRKCYGPSATSEKCPGNALEKGGKGSITEQLLNARADVTLGGGAKTFAETATAGEWQGKTLREQAEARGYQLVSDAASLNSVTEANQQKPLLGLFADGNMPVRWLGPKATYHGNIDKPAVTCTPNPQRNDSVPTLAQMTDKAIELLSKNEKGFFLQVEGASIDKQDHAANPCGQIGETVDLDEAVQRALEFAKKEGNTLVIVTADHAHASQIVAPDTKAPGLTQALNTKDGAVMVMSYGNSEEDSQEHTGSQLRIAAYGPHAANVVGLTDQTDLFYTMKAALGLK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Crystallographic analysis of reversible metal binding observed in a mutant (Asp153-->Gly) of Escherichia coli alkaline phosphatase.
pubmed doi rcsb
molecule keywords ALKALINE PHOSPHATASE INTERMEDIATE II OF HOLO ENZYME
source organism Escherichia coli
molecule tags Non specific mono-esterase
total genus 153
structure length 449
sequence length 449
chains with identical sequence B
other databases KnotProt 2.0: S +31
ec nomenclature ec 3.1.3.1: Alkaline phosphatase.
pdb deposition date 1995-08-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00245 Alk_phosphatase Alkaline phosphatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 1ajdA00
2ANHA 1ALKA 1ANJA 3Q3QA 1AJAA 3NKRA 2IUCB 2D1GA 1SHNA 1ELYA 3TX0A 4UPLA 4GTWA 5IJQA 1Y7AA 4CXUA 4LRFA 3WAXA 5GOVA 1KH4A 1E1ZP 1HQAA 4GTYA 4UPHA 3MK1A 3SZZA 5LRMA 2GLQA 4LRAA 1O98A 1URBA 4QAXA 3M8WA 1N2KA 2GSOA 3MK0A 4KJDA 3NKPA 5EGEA 2W5RA 3NKQA 1EW2A 1AUKA 4KAVA 4CXKA 1ALHA 4FDIA 3BDGB 4LR9A 4MY4A 3NKOA 3M8YA 3UNYA 4B56A 1ANIA 1KHJA 3NKNA 4LR8A 3M8ZA 1ELZA 5INHA 4LRBA 1KH5A 4LQYA 1EW9A 2QZUA 4CXSA 2W5TA 1EI6A 3DYCA 1KH9A 1ALIA 4KM4A 4LR7A 3T00A 1EW8A 3T02A 2W5VA 3DPCA 4NWJA 3UN5A 1URAA 2RH6A 1P49A 2W5WA 3NKMA 3IDDA 1AJCA 3NVLA 4ZG7A 4CYSA 3CMRA 1E33P 2ZKTA 1EJJA 1HJKA 3ED4A 2XR9A 4MHXA 3KD8A 5TJ3A 2IFYA 3E2DA 3M7VA 5LRNA 3MK2A 4ZG6A 1FSUA 1ZEDA 1O99A 4UOOA 5L0EA 3LXQA 3IGZB 3T01A 1K7HA 2W5XA 3WAVA 1ZEBA 3WBHA 4YR1A 4LR2A 4GTXA 5AJ9A 3A52A 2GSUA 3UN2A 4LRCA 4FDJA 4CYRA 5L0BA 2X98A 1N2LA 5K4PA 1KHLA 2IUCA 4KAYA 4UPKA 3TG0A 3BDFA 4GTZA 4UOPA 2GA3A 1KHKA 4NWXA 3B5QA 5DLTA 1KH7A 1AJDA 1AJBA 3IGYB 4KJGA 4UPIA 3UN3A 1KHNA 1ALJA 1Y6VA 5GRRA 4TN0A 5LQQA 2W5QA 2W8SA 3OT9A 4ZGAA 1SHQA 3WAYA 5L0KA 4LRDA 5DLWA 3BDGA 1ELXA 2G9YA 1E3CP 1HDHA 1ED9A 3TWZA 5DLVA 3WAWA 4ZG9A 2VQRA 2GSNA 5IJSA 2W5SA 4MIVA 1ED8A 4N7TA 5EGHA 3SZYA 3UO0A 5KXAA 1EQJA 1E2SP 2XRGA 5HRTA 2W8DA 1ZEFA 5LIAA 4UORA 5C66A 3BDHA 4LREA 1B8JA
chains in the Genus database with same CATH superfamily
2ANHA 1ALKA 1ANJA 3Q3QA 1AJAA 3NKRA 2IUCB 2D1GA 1SHNA 1ELYA 3TX0A 4UPLA 4GTWA 5IJQA 1Y7AA 4CXUA 4LRFA 3WAXA 5GOVA 1KH4A 1E1ZP 1HQAA 4GTYA 4UPHA 3MK1A 3SZZA 5LRMA 2GLQA 4LRAA 1O98A 1URBA 4QAXA 3M8WA 1N2KA 2GSOA 3MK0A 4KJDA 3NKPA 5EGEA 2W5RA 3NKQA 1EW2A 1AUKA 4KAVA 4CXKA 1ALHA 4FDIA 3BDGB 4LR9A 4MY4A 3NKOA 3M8YA 3UNYA 4B56A 1ANIA 1KHJA 3NKNA 4LR8A 3M8ZA 1ELZA 5INHA 4LRBA 1KH5A 4LQYA 1EW9A 2QZUA 4CXSA 2W5TA 1EI6A 3DYCA 1KH9A 1ALIA 4KM4A 4LR7A 3T00A 1EW8A 3T02A 2W5VA 3DPCA 4NWJA 3UN5A 1URAA 2RH6A 1P49A 2W5WA 3NKMA 3IDDA 1AJCA 3NVLA 4ZG7A 4CYSA 3CMRA 1E33P 2ZKTA 1EJJA 1HJKA 3ED4A 2XR9A 4MHXA 3KD8A 5TJ3A 2IFYA 3E2DA 3M7VA 5LRNA 3MK2A 4ZG6A 1FSUA 1ZEDA 1O99A 4UOOA 5L0EA 3LXQA 3IGZB 3T01A 1K7HA 2W5XA 3WAVA 1ZEBA 3WBHA 4YR1A 4LR2A 4GTXA 5AJ9A 3A52A 2GSUA 3UN2A 4LRCA 4FDJA 4CYRA 5L0BA 2X98A 1N2LA 5K4PA 1KHLA 2IUCA 4KAYA 4UPKA 3TG0A 3BDFA 4GTZA 4UOPA 2GA3A 1KHKA 4NWXA 3B5QA 5DLTA 1KH7A 1AJDA 1AJBA 3IGYB 4KJGA 4UPIA 3UN3A 1KHNA 1ALJA 1Y6VA 5GRRA 4TN0A 5LQQA 2W5QA 2W8SA 3OT9A 4ZGAA 1SHQA 3WAYA 5L0KA 4LRDA 5DLWA 3BDGA 1ELXA 2G9YA 1E3CP 1HDHA 1ED9A 3TWZA 5DLVA 3WAWA 4ZG9A 2VQRA 2GSNA 5IJSA 2W5SA 4MIVA 1ED8A 4N7TA 5EGHA 3SZYA 3UO0A 5KXAA 1EQJA 1E2SP 2XRGA 5HRTA 2W8DA 1ZEFA 5LIAA 4UORA 5C66A 3BDHA 4LREA 1B8JA
chains in the Genus database with same CATH topology
2ANHA 1ALKA 1ANJA 3Q3QA 1AJAA 3NKRA 2IUCB 2D1GA 1SHNA 1ELYA 3TX0A 4UPLA 4GTWA 5IJQA 1Y7AA 4CXUA 4LRFA 3WAXA 5GOVA 1KH4A 1E1ZP 1HQAA 4GTYA 4UPHA 3MK1A 3SZZA 5LRMA 2GLQA 4LRAA 1O98A 1URBA 4QAXA 3M8WA 1N2KA 2GSOA 3MK0A 4KJDA 3NKPA 5EGEA 2W5RA 3NKQA 1EW2A 1AUKA 4KAVA 4CXKA 1ALHA 4FDIA 3BDGB 4LR9A 4MY4A 3NKOA 3M8YA 3UNYA 4B56A 1ANIA 1KHJA 3NKNA 4LR8A 3M8ZA 1ELZA 5INHA 4LRBA 1KH5A 4LQYA 1EW9A 2QZUA 4CXSA 2W5TA 1EI6A 3DYCA 1KH9A 1ALIA 4KM4A 4LR7A 3T00A 1EW8A 3T02A 2W5VA 3DPCA 4NWJA 3UN5A 1URAA 2RH6A 1P49A 2W5WA 3NKMA 3IDDA 1AJCA 3NVLA 4ZG7A 4CYSA 3CMRA 1E33P 2ZKTA 1EJJA 1HJKA 3ED4A 2XR9A 4MHXA 3KD8A 5TJ3A 2IFYA 3E2DA 3M7VA 5LRNA 3MK2A 4ZG6A 1FSUA 1ZEDA 1O99A 4UOOA 5L0EA 3LXQA 3IGZB 3T01A 1K7HA 2W5XA 3WAVA 1ZEBA 3WBHA 4YR1A 4LR2A 4GTXA 5AJ9A 3A52A 2GSUA 3UN2A 4LRCA 4FDJA 4CYRA 5L0BA 2X98A 1N2LA 5K4PA 1KHLA 2IUCA 4KAYA 4UPKA 3TG0A 3BDFA 4GTZA 4UOPA 2GA3A 1KHKA 4NWXA 3B5QA 5DLTA 1KH7A 1AJDA 1AJBA 3IGYB 4KJGA 4UPIA 3UN3A 1KHNA 1ALJA 1Y6VA 5GRRA 4TN0A 5LQQA 2W5QA 2W8SA 3OT9A 4ZGAA 1SHQA 3WAYA 5L0KA 4LRDA 5DLWA 3BDGA 1ELXA 2G9YA 1E3CP 1HDHA 1ED9A 3TWZA 5DLVA 3WAWA 4ZG9A 2VQRA 2GSNA 5IJSA 2W5SA 4MIVA 1ED8A 4N7TA 5EGHA 3SZYA 3UO0A 5KXAA 1EQJA 1E2SP 2XRGA 5HRTA 2W8DA 1ZEFA 5LIAA 4UORA 5C66A 3BDHA 4LREA 1B8JA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ANH A;  1ALK A;  1ANJ A;  3Q3Q A;  1AJA A;  3NKR A;  2IUC B;  2D1G A;  1SHN A;  1ELY A;  3TX0 A;  4UPL A;  4GTW A;  5IJQ A;  1Y7A A;  4CXU A;  4LRF A;  3WAX A;  5GOV A;  1KH4 A;  1E1Z P;  1HQA A;  4GTY A;  4UPH A;  3MK1 A;  3SZZ A;  5LRM A;  2GLQ A;  4LRA A;  1O98 A;  1URB A;  4QAX A;  3M8W A;  1N2K A;  2GSO A;  3MK0 A;  4KJD A;  3NKP A;  5EGE A;  2W5R A;  3NKQ A;  1EW2 A;  1AUK A;  4KAV A;  4CXK A;  1ALH A;  4FDI A;  3BDG B;  4LR9 A;  4MY4 A;  3NKO A;  3M8Y A;  3UNY A;  4B56 A;  1ANI A;  1KHJ A;  3NKN A;  4LR8 A;  3M8Z A;  1ELZ A;  5INH A;  4LRB A;  1KH5 A;  4LQY A;  1EW9 A;  2QZU A;  4CXS A;  2W5T A;  1EI6 A;  3DYC A;  1KH9 A;  1ALI A;  4KM4 A;  4LR7 A;  3T00 A;  1EW8 A;  3T02 A;  2W5V A;  3DPC A;  4NWJ A;  3UN5 A;  1URA A;  2RH6 A;  1P49 A;  2W5W A;  3NKM A;  3IDD A;  1AJC A;  3NVL A;  4ZG7 A;  4CYS A;  3CMR A;  1E33 P;  2ZKT A;  1EJJ A;  1HJK A;  3ED4 A;  2XR9 A;  4MHX A;  3KD8 A;  5TJ3 A;  2IFY A;  3E2D A;  3M7V A;  5LRN A;  3MK2 A;  4ZG6 A;  1FSU A;  1ZED A;  1O99 A;  4UOO A;  5L0E A;  3LXQ A;  3IGZ B;  3T01 A;  1K7H A;  2W5X A;  3WAV A;  1ZEB A;  3WBH A;  4YR1 A;  4LR2 A;  4GTX A;  5AJ9 A;  3A52 A;  2GSU A;  3UN2 A;  4LRC A;  4FDJ A;  4CYR A;  5L0B A;  2X98 A;  1N2L A;  5K4P A;  1KHL A;  2IUC A;  4KAY A;  4UPK A;  3TG0 A;  3BDF A;  4GTZ A;  4UOP A;  2GA3 A;  1KHK A;  4NWX A;  3B5Q A;  5DLT A;  1KH7 A;  1AJD A;  1AJB A;  3IGY B;  4KJG A;  4UPI A;  3UN3 A;  1KHN A;  1ALJ A;  1Y6V A;  5GRR A;  4TN0 A;  5LQQ A;  2W5Q A;  2W8S A;  3OT9 A;  4ZGA A;  1SHQ A;  3WAY A;  5L0K A;  4LRD A;  5DLW A;  3BDG A;  1ELX A;  2G9Y A;  1E3C P;  1HDH A;  1ED9 A;  3TWZ A;  5DLV A;  3WAW A;  4ZG9 A;  2VQR A;  2GSN A;  5IJS A;  2W5S A;  4MIV A;  1ED8 A;  4N7T A;  5EGH A;  3SZY A;  3UO0 A;  5KXA A;  1EQJ A;  1E2S P;  2XRG A;  5HRT A;  2W8D A;  1ZEF A;  5LIA A;  4UOR A;  5C66 A;  3BDH A;  4LRE A;  1B8J A; 
#chains in the Genus database with same CATH topology
 2ANH A;  1ALK A;  1ANJ A;  3Q3Q A;  1AJA A;  3NKR A;  2IUC B;  2D1G A;  1SHN A;  1ELY A;  3TX0 A;  4UPL A;  4GTW A;  5IJQ A;  1Y7A A;  4CXU A;  4LRF A;  3WAX A;  5GOV A;  1KH4 A;  1E1Z P;  1HQA A;  4GTY A;  4UPH A;  3MK1 A;  3SZZ A;  5LRM A;  2GLQ A;  4LRA A;  1O98 A;  1URB A;  4QAX A;  3M8W A;  1N2K A;  2GSO A;  3MK0 A;  4KJD A;  3NKP A;  5EGE A;  2W5R A;  3NKQ A;  1EW2 A;  1AUK A;  4KAV A;  4CXK A;  1ALH A;  4FDI A;  3BDG B;  4LR9 A;  4MY4 A;  3NKO A;  3M8Y A;  3UNY A;  4B56 A;  1ANI A;  1KHJ A;  3NKN A;  4LR8 A;  3M8Z A;  1ELZ A;  5INH A;  4LRB A;  1KH5 A;  4LQY A;  1EW9 A;  2QZU A;  4CXS A;  2W5T A;  1EI6 A;  3DYC A;  1KH9 A;  1ALI A;  4KM4 A;  4LR7 A;  3T00 A;  1EW8 A;  3T02 A;  2W5V A;  3DPC A;  4NWJ A;  3UN5 A;  1URA A;  2RH6 A;  1P49 A;  2W5W A;  3NKM A;  3IDD A;  1AJC A;  3NVL A;  4ZG7 A;  4CYS A;  3CMR A;  1E33 P;  2ZKT A;  1EJJ A;  1HJK A;  3ED4 A;  2XR9 A;  4MHX A;  3KD8 A;  5TJ3 A;  2IFY A;  3E2D A;  3M7V A;  5LRN A;  3MK2 A;  4ZG6 A;  1FSU A;  1ZED A;  1O99 A;  4UOO A;  5L0E A;  3LXQ A;  3IGZ B;  3T01 A;  1K7H A;  2W5X A;  3WAV A;  1ZEB A;  3WBH A;  4YR1 A;  4LR2 A;  4GTX A;  5AJ9 A;  3A52 A;  2GSU A;  3UN2 A;  4LRC A;  4FDJ A;  4CYR A;  5L0B A;  2X98 A;  1N2L A;  5K4P A;  1KHL A;  2IUC A;  4KAY A;  4UPK A;  3TG0 A;  3BDF A;  4GTZ A;  4UOP A;  2GA3 A;  1KHK A;  4NWX A;  3B5Q A;  5DLT A;  1KH7 A;  1AJD A;  1AJB A;  3IGY B;  4KJG A;  4UPI A;  3UN3 A;  1KHN A;  1ALJ A;  1Y6V A;  5GRR A;  4TN0 A;  5LQQ A;  2W5Q A;  2W8S A;  3OT9 A;  4ZGA A;  1SHQ A;  3WAY A;  5L0K A;  4LRD A;  5DLW A;  3BDG A;  1ELX A;  2G9Y A;  1E3C P;  1HDH A;  1ED9 A;  3TWZ A;  5DLV A;  3WAW A;  4ZG9 A;  2VQR A;  2GSN A;  5IJS A;  2W5S A;  4MIV A;  1ED8 A;  4N7T A;  5EGH A;  3SZY A;  3UO0 A;  5KXA A;  1EQJ A;  1E2S P;  2XRG A;  5HRT A;  2W8D A;  1ZEF A;  5LIA A;  4UOR A;  5C66 A;  3BDH A;  4LRE A;  1B8J A; 
#chains in the Genus database with same CATH homology
 2ANH A;  1ALK A;  1ANJ A;  3Q3Q A;  1AJA A;  3NKR A;  2IUC B;  2D1G A;  1SHN A;  1ELY A;  3TX0 A;  4UPL A;  4GTW A;  5IJQ A;  1Y7A A;  4CXU A;  4LRF A;  3WAX A;  5GOV A;  1KH4 A;  1E1Z P;  1HQA A;  4GTY A;  4UPH A;  3MK1 A;  3SZZ A;  5LRM A;  2GLQ A;  4LRA A;  1O98 A;  1URB A;  4QAX A;  3M8W A;  1N2K A;  2GSO A;  3MK0 A;  4KJD A;  3NKP A;  5EGE A;  2W5R A;  3NKQ A;  1EW2 A;  1AUK A;  4KAV A;  4CXK A;  1ALH A;  4FDI A;  3BDG B;  4LR9 A;  4MY4 A;  3NKO A;  3M8Y A;  3UNY A;  4B56 A;  1ANI A;  1KHJ A;  3NKN A;  4LR8 A;  3M8Z A;  1ELZ A;  5INH A;  4LRB A;  1KH5 A;  4LQY A;  1EW9 A;  2QZU A;  4CXS A;  2W5T A;  1EI6 A;  3DYC A;  1KH9 A;  1ALI A;  4KM4 A;  4LR7 A;  3T00 A;  1EW8 A;  3T02 A;  2W5V A;  3DPC A;  4NWJ A;  3UN5 A;  1URA A;  2RH6 A;  1P49 A;  2W5W A;  3NKM A;  3IDD A;  1AJC A;  3NVL A;  4ZG7 A;  4CYS A;  3CMR A;  1E33 P;  2ZKT A;  1EJJ A;  1HJK A;  3ED4 A;  2XR9 A;  4MHX A;  3KD8 A;  5TJ3 A;  2IFY A;  3E2D A;  3M7V A;  5LRN A;  3MK2 A;  4ZG6 A;  1FSU A;  1ZED A;  1O99 A;  4UOO A;  5L0E A;  3LXQ A;  3IGZ B;  3T01 A;  1K7H A;  2W5X A;  3WAV A;  1ZEB A;  3WBH A;  4YR1 A;  4LR2 A;  4GTX A;  5AJ9 A;  3A52 A;  2GSU A;  3UN2 A;  4LRC A;  4FDJ A;  4CYR A;  5L0B A;  2X98 A;  1N2L A;  5K4P A;  1KHL A;  2IUC A;  4KAY A;  4UPK A;  3TG0 A;  3BDF A;  4GTZ A;  4UOP A;  2GA3 A;  1KHK A;  4NWX A;  3B5Q A;  5DLT A;  1KH7 A;  1AJD A;  1AJB A;  3IGY B;  4KJG A;  4UPI A;  3UN3 A;  1KHN A;  1ALJ A;  1Y6V A;  5GRR A;  4TN0 A;  5LQQ A;  2W5Q A;  2W8S A;  3OT9 A;  4ZGA A;  1SHQ A;  3WAY A;  5L0K A;  4LRD A;  5DLW A;  3BDG A;  1ELX A;  2G9Y A;  1E3C P;  1HDH A;  1ED9 A;  3TWZ A;  5DLV A;  3WAW A;  4ZG9 A;  2VQR A;  2GSN A;  5IJS A;  2W5S A;  4MIV A;  1ED8 A;  4N7T A;  5EGH A;  3SZY A;  3UO0 A;  5KXA A;  1EQJ A;  1E2S P;  2XRG A;  5HRT A;  2W8D A;  1ZEF A;  5LIA A;  4UOR A;  5C66 A;  3BDH A;  4LRE A;  1B8J A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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