1AJWA

Structure of rhogdi: a c-terminal binding domain targets an n-terminal inhibitory peptide to gtpases, nmr, 20 structures
Total Genus 12
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
12
sequence length
145
structure length
145
Chain Sequence
AVSADPNVPNVVVTRLTLVCSTAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPMEEAPKGMLARGSYNIKSRFTDDDRTDHLSWEWNLTIKKEWKD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Rho-gtpase inhibitor
molecule keywords RHOGDI
publication title C-terminal binding domain of Rho GDP-dissociation inhibitor directs N-terminal inhibitory peptide to GTPases.
pubmed doi rcsb
source organism Bos taurus
total genus 12
structure length 145
sequence length 145
ec nomenclature
pdb deposition date 1997-05-11
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.50.30 Mainly Beta Distorted Sandwich Coagulation Factor XIII; Chain A, domain 1 Coagulation Factor XIII, subunit A, domain 1 1ajwA00
1HH4D 1QVYA 1FT0A 1GDFA 1KMTA 1FT3A 1FSOA 2JHXA 1AJWA 2JHSA 2JHVA 2JI0A 1RHOA 2BXWA 4F38B 1FSTA 2JHWA 2JHUA 2JHTA 2JHZA 1DS6B 2JHYA 1DOAB
chains in the Genus database with same CATH superfamily
5AA7A 4LN0A 3UAMA 3EJAA 3JUAA 3ZUDA 5F2UA 2R5OA 4D7VA 2JHSA 4FMRA 2JHVA 1RHOA 1FSTA 4ALSA 4OY6A 4OY8A 3RBQA 5TB5B 4F38B 4JV8B 4JVFB 1QVYA 2YOXA 4JV6B 4ALEA 5DQ8A 4QI8A 1GDFA 1KMTA 1FSOA 4OY7A 2JHXA 1KSHB 4ALCA 2JI0A 4GOKC 2YOWA 1KSGB 4RE1A 3KYSA 1KSJB 5ACHA 5ACJA 2JHTA 5ACIA 2XWXA 2YOYA 4GOJC 1DOAB 3GQQA 4MAHA 5FJQA 1FT0A 5DQEA 5HNPA 5ACGA 5ACFA 5E80A 1FT3A 4GBOA 5EMVA 2BXWA 5EMWA 2JHWA 2BEMA 2YETA 4MAIA 1DS6B 4EISA 3T5GB 4ALTA 4EIRA 4JHPB 1HH4D 5FOHA 3EIIA 4A02A 5L7KA 4JVBB 5E8FA 5HNOA 2BENA 3L15A 4B5QA 4ALQA 4ALRA 5HGUA 2LHSA 1AJWA 5TARB 4EISB 3T5IA 5FTZA 5IJUA 2VTCA 2JHUA 2JHZA 4D7UA 2JHYA
chains in the Genus database with same CATH topology
1HH4D 1QVYA 1FT0A 1GDFA 1KMTA 1FT3A 1FSOA 2JHXA 1AJWA 2JHSA 2JHVA 2JI0A 1RHOA 2BXWA 4F38B 1FSTA 2JHWA 2JHUA 2JHTA 2JHZA 1DS6B 2JHYA 1DOAB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1HH4 D;  1QVY A;  1FT0 A;  1GDF A;  1KMT A;  1FT3 A;  1FSO A;  2JHX A;  1AJW A;  2JHS A;  2JHV A;  2JI0 A;  1RHO A;  2BXW A;  4F38 B;  1FST A;  2JHW A;  2JHU A;  2JHT A;  2JHZ A;  1DS6 B;  2JHY A;  1DOA B; 
#chains in the Genus database with same CATH topology
 5AA7 A;  4LN0 A;  3UAM A;  3EJA A;  3JUA A;  3ZUD A;  5F2U A;  2R5O A;  4D7V A;  2JHS A;  4FMR A;  2JHV A;  1RHO A;  1FST A;  4ALS A;  4OY6 A;  4OY8 A;  3RBQ A;  5TB5 B;  4F38 B;  4JV8 B;  4JVF B;  1QVY A;  2YOX A;  4JV6 B;  4ALE A;  5DQ8 A;  4QI8 A;  1GDF A;  1KMT A;  1FSO A;  4OY7 A;  2JHX A;  1KSH B;  4ALC A;  2JI0 A;  4GOK C;  2YOW A;  1KSG B;  4RE1 A;  3KYS A;  1KSJ B;  5ACH A;  5ACJ A;  2JHT A;  5ACI A;  2XWX A;  2YOY A;  4GOJ C;  1DOA B;  3GQQ A;  4MAH A;  5FJQ A;  1FT0 A;  5DQE A;  5HNP A;  5ACG A;  5ACF A;  5E80 A;  1FT3 A;  4GBO A;  5EMV A;  2BXW A;  5EMW A;  2JHW A;  2BEM A;  2YET A;  4MAI A;  1DS6 B;  4EIS A;  3T5G B;  4ALT A;  4EIR A;  4JHP B;  1HH4 D;  5FOH A;  3EII A;  4A02 A;  5L7K A;  4JVB B;  5E8F A;  5HNO A;  2BEN A;  3L15 A;  4B5Q A;  4ALQ A;  4ALR A;  5HGU A;  2LHS A;  1AJW A;  5TAR B;  4EIS B;  3T5I A;  5FTZ A;  5IJU A;  2VTC A;  2JHU A;  2JHZ A;  4D7U A;  2JHY A; 
#chains in the Genus database with same CATH homology
 1HH4 D;  1QVY A;  1FT0 A;  1GDF A;  1KMT A;  1FT3 A;  1FSO A;  2JHX A;  1AJW A;  2JHS A;  2JHV A;  2JI0 A;  1RHO A;  2BXW A;  4F38 B;  1FST A;  2JHW A;  2JHU A;  2JHT A;  2JHZ A;  1DS6 B;  2JHY A;  1DOA B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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