1AK6A

Destrin, nmr, minimized average structure
Total Genus 18
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
174
structure length
174
Chain Sequence
TMITPSSGNSASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLSADKKCIIVEEGKEILVGDVGVTITDPFKHFVGMLPEKDCRYALYDASFETKESRKEELMFFLWAPELAPLKSKMIYASSKDAIKKKFQGIKHECQANGPEDLNRACIAEKLGGSLIVAFEGCPV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Actin-binding protein
molecule keywords DESTRIN
publication title Tertiary structure of destrin and structural similarity between two actin-regulating protein families.
pubmed doi rcsb
source organism Homo sapiens, sus scrofa
total genus 18
structure length 174
sequence length 174
ec nomenclature
pdb deposition date 1997-05-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00241 Cofilin_ADF Cofilin/tropomyosin-type actin-binding protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 1ak6A00
5KYNA 1RGIG 5A1MA 1F7SA 1SVRA 5FAEA 3EG9B 2MV2A 4BEX1 2MP4A 1PCXA 1YAGG 1NM1G 1YVNG 4S10C 4PKGG 2NUPB 2VIKA 2NUPA 2D8BA 2FGHA 1M4JA 5KYYB 3L50A 3CJCG 2QTVA 2VILA 3FG6A 1D0NA 4CBUG 2XF1A 1AK7A 1UDMA 2I2QA 4JD2H 3A5MS 1DEJS 3FFNA 4LIZA 2FF6G 1T2LA 2KVKA 3EH1A 5KYWB 1T3YA 5FAFA 1PD1A 1D4XG 5KYWA 3EFOA 3EGXA 1VKKA 2FH2A 2FH1A 2VACA 3CIPG 1P8XA 2FF3A 1X67A 2W0IA 1NMDG 2FH4A 3A5LS 3A5NS 3A5OS 1AK6A 1SVQA 1WM4A 4KEDA 4PKHB 5DD2A 1EQYS 3DAWB 1M2VA 3FFKA 1C0FS 1Q8GA 2MOTA 4KEEA 3EGDB 3EGDA 1WFSA 5HVKD 1T44G 3CI5G 1HQZ1 1T3XA 1C0GS 5KYXB 3EFOB 1VFQA 5L6WC 3EGXB 5KYXA 4CBWG 3TU5B 2NUTA 5KYUA 1CFYA 3CJBG 1TVJA 5IVUA 1SVYA 1QPVA 2LJ8A 4KEFA 1JHWA 3Q2BA 2FH3A 2LXXA 1NPHA 1P8ZG 1M2VB 1KCQA 2XFAA 4CBXG 1V6FA 1CNUA 1M2OA 1MDUA 4Z94G 1NLVG 3EG9A 5HVKB 1Q8XA 1H1VG 2LLFA 3EH2A 3FG7A 1COFA 2NUTB 5KYUB 1TMWA 1AHQA 1J72A 1PD0A 4PKIG 1WNJA 2L72A 5KYYA 2HD7A 1ESVS
chains in the Genus database with same CATH superfamily
5KYNA 1RGIG 5A1MA 1F7SA 1SVRA 5FAEA 3EG9B 2MV2A 4BEX1 2MP4A 1PCXA 1YAGG 1NM1G 1YVNG 4S10C 4PKGG 2NUPB 2VIKA 2NUPA 2D8BA 2FGHA 1M4JA 5KYYB 3L50A 3CJCG 2QTVA 2VILA 3FG6A 1D0NA 4CBUG 2XF1A 1AK7A 1UDMA 2I2QA 4JD2H 3A5MS 1DEJS 3FFNA 4LIZA 3DA7A 2FF6G 1T2LA 2KVKA 3EH1A 5KYWB 1T3YA 5FAFA 1PD1A 1D4XG 5KYWA 3EFOA 3EGXA 1VKKA 2FH2A 2FH1A 2VACA 3CIPG 1P8XA 2FF3A 1X67A 2W0IA 1NMDG 2FH4A 3A5LS 3A5NS 3A5OS 1AK6A 1SVQA 1WM4A 4KEDA 4PKHB 5DD2A 1EQYS 3DAWB 1M2VA 3FFKA 1C0FS 1Q8GA 2MOTA 4KEEA 3EGDB 3EGDA 1WFSA 5HVKD 1T44G 3CI5G 1HQZ1 1T3XA 1C0GS 5KYXB 3EFOB 1VFQA 5L6WC 3EGXB 5KYXA 4CBWG 3TU5B 2NUTA 5KYUA 1CFYA 3CJBG 1TVJA 5IVUA 1SVYA 1QPVA 2LJ8A 4KEFA 1JHWA 3Q2BA 2FH3A 2LXXA 1NPHA 1P8ZG 1M2VB 1KCQA 2XFAA 4CBXG 1V6FA 1CNUA 1M2OA 1MDUA 4Z94G 1NLVG 3EG9A 5HVKB 1Q8XA 1H1VG 2LLFA 3EH2A 3FG7A 1COFA 2NUTB 5KYUB 1TMWA 1AHQA 1J72A 1PD0A 4PKIG 1WNJA 2L72A 5KYYA 2HD7A 1ESVS
chains in the Genus database with same CATH topology
5KYNA 1RGIG 5A1MA 1F7SA 1SVRA 5FAEA 3EG9B 2MV2A 4BEX1 2MP4A 1PCXA 1YAGG 1NM1G 1YVNG 4S10C 4PKGG 2NUPB 2VIKA 2NUPA 2D8BA 2FGHA 1M4JA 5KYYB 3L50A 3CJCG 2QTVA 2VILA 3FG6A 1D0NA 4CBUG 2XF1A 1AK7A 1UDMA 2I2QA 4JD2H 3A5MS 1DEJS 3FFNA 4LIZA 3DA7A 2FF6G 1T2LA 2KVKA 3EH1A 5KYWB 1T3YA 5FAFA 1PD1A 1D4XG 5KYWA 3EFOA 3EGXA 1VKKA 2FH2A 2FH1A 2VACA 3CIPG 1P8XA 2FF3A 1X67A 2W0IA 1NMDG 2FH4A 3A5LS 3A5NS 3A5OS 1AK6A 1SVQA 1WM4A 4KEDA 4PKHB 5DD2A 1EQYS 3DAWB 1M2VA 3FFKA 1C0FS 1Q8GA 2MOTA 4KEEA 3EGDB 3EGDA 1WFSA 5HVKD 1T44G 3CI5G 1HQZ1 1T3XA 1C0GS 5KYXB 3EFOB 1VFQA 5L6WC 3EGXB 5KYXA 4CBWG 3TU5B 2NUTA 5KYUA 1CFYA 3CJBG 1TVJA 5IVUA 1SVYA 1QPVA 2LJ8A 4KEFA 1JHWA 3Q2BA 2FH3A 2LXXA 1NPHA 1P8ZG 1M2VB 1KCQA 2XFAA 4CBXG 1V6FA 1CNUA 1M2OA 1MDUA 4Z94G 1NLVG 3EG9A 5HVKB 1Q8XA 1H1VG 2LLFA 3EH2A 3FG7A 1COFA 2NUTB 5KYUB 1TMWA 1AHQA 1J72A 1PD0A 4PKIG 1WNJA 2L72A 5KYYA 2HD7A 1ESVS
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5KYN A;  1RGI G;  5A1M A;  1F7S A;  1SVR A;  5FAE A;  3EG9 B;  2MV2 A;  4BEX 1;  2MP4 A;  1PCX A;  1YAG G;  1NM1 G;  1YVN G;  4S10 C;  4PKG G;  2NUP B;  2VIK A;  2NUP A;  2D8B A;  2FGH A;  1M4J A;  5KYY B;  3L50 A;  3CJC G;  2QTV A;  2VIL A;  3FG6 A;  1D0N A;  4CBU G;  2XF1 A;  1AK7 A;  1UDM A;  2I2Q A;  4JD2 H;  3A5M S;  1DEJ S;  3FFN A;  4LIZ A;  2FF6 G;  1T2L A;  2KVK A;  3EH1 A;  5KYW B;  1T3Y A;  5FAF A;  1PD1 A;  1D4X G;  5KYW A;  3EFO A;  3EGX A;  1VKK A;  2FH2 A;  2FH1 A;  2VAC A;  3CIP G;  1P8X A;  2FF3 A;  1X67 A;  2W0I A;  1NMD G;  2FH4 A;  3A5L S;  3A5N S;  3A5O S;  1AK6 A;  1SVQ A;  1WM4 A;  4KED A;  4PKH B;  5DD2 A;  1EQY S;  3DAW B;  1M2V A;  3FFK A;  1C0F S;  1Q8G A;  2MOT A;  4KEE A;  3EGD B;  3EGD A;  1WFS A;  5HVK D;  1T44 G;  3CI5 G;  1HQZ 1;  1T3X A;  1C0G S;  5KYX B;  3EFO B;  1VFQ A;  5L6W C;  3EGX B;  5KYX A;  4CBW G;  3TU5 B;  2NUT A;  5KYU A;  1CFY A;  3CJB G;  1TVJ A;  5IVU A;  1SVY A;  1QPV A;  2LJ8 A;  4KEF A;  1JHW A;  3Q2B A;  2FH3 A;  2LXX A;  1NPH A;  1P8Z G;  1M2V B;  1KCQ A;  2XFA A;  4CBX G;  1V6F A;  1CNU A;  1M2O A;  1MDU A;  4Z94 G;  1NLV G;  3EG9 A;  5HVK B;  1Q8X A;  1H1V G;  2LLF A;  3EH2 A;  3FG7 A;  1COF A;  2NUT B;  5KYU B;  1TMW A;  1AHQ A;  1J72 A;  1PD0 A;  4PKI G;  1WNJ A;  2L72 A;  5KYY A;  2HD7 A;  1ESV S; 
#chains in the Genus database with same CATH topology
 5KYN A;  1RGI G;  5A1M A;  1F7S A;  1SVR A;  5FAE A;  3EG9 B;  2MV2 A;  4BEX 1;  2MP4 A;  1PCX A;  1YAG G;  1NM1 G;  1YVN G;  4S10 C;  4PKG G;  2NUP B;  2VIK A;  2NUP A;  2D8B A;  2FGH A;  1M4J A;  5KYY B;  3L50 A;  3CJC G;  2QTV A;  2VIL A;  3FG6 A;  1D0N A;  4CBU G;  2XF1 A;  1AK7 A;  1UDM A;  2I2Q A;  4JD2 H;  3A5M S;  1DEJ S;  3FFN A;  4LIZ A;  3DA7 A;  2FF6 G;  1T2L A;  2KVK A;  3EH1 A;  5KYW B;  1T3Y A;  5FAF A;  1PD1 A;  1D4X G;  5KYW A;  3EFO A;  3EGX A;  1VKK A;  2FH2 A;  2FH1 A;  2VAC A;  3CIP G;  1P8X A;  2FF3 A;  1X67 A;  2W0I A;  1NMD G;  2FH4 A;  3A5L S;  3A5N S;  3A5O S;  1AK6 A;  1SVQ A;  1WM4 A;  4KED A;  4PKH B;  5DD2 A;  1EQY S;  3DAW B;  1M2V A;  3FFK A;  1C0F S;  1Q8G A;  2MOT A;  4KEE A;  3EGD B;  3EGD A;  1WFS A;  5HVK D;  1T44 G;  3CI5 G;  1HQZ 1;  1T3X A;  1C0G S;  5KYX B;  3EFO B;  1VFQ A;  5L6W C;  3EGX B;  5KYX A;  4CBW G;  3TU5 B;  2NUT A;  5KYU A;  1CFY A;  3CJB G;  1TVJ A;  5IVU A;  1SVY A;  1QPV A;  2LJ8 A;  4KEF A;  1JHW A;  3Q2B A;  2FH3 A;  2LXX A;  1NPH A;  1P8Z G;  1M2V B;  1KCQ A;  2XFA A;  4CBX G;  1V6F A;  1CNU A;  1M2O A;  1MDU A;  4Z94 G;  1NLV G;  3EG9 A;  5HVK B;  1Q8X A;  1H1V G;  2LLF A;  3EH2 A;  3FG7 A;  1COF A;  2NUT B;  5KYU B;  1TMW A;  1AHQ A;  1J72 A;  1PD0 A;  4PKI G;  1WNJ A;  2L72 A;  5KYY A;  2HD7 A;  1ESV S; 
#chains in the Genus database with same CATH homology
 5KYN A;  1RGI G;  5A1M A;  1F7S A;  1SVR A;  5FAE A;  3EG9 B;  2MV2 A;  4BEX 1;  2MP4 A;  1PCX A;  1YAG G;  1NM1 G;  1YVN G;  4S10 C;  4PKG G;  2NUP B;  2VIK A;  2NUP A;  2D8B A;  2FGH A;  1M4J A;  5KYY B;  3L50 A;  3CJC G;  2QTV A;  2VIL A;  3FG6 A;  1D0N A;  4CBU G;  2XF1 A;  1AK7 A;  1UDM A;  2I2Q A;  4JD2 H;  3A5M S;  1DEJ S;  3FFN A;  4LIZ A;  3DA7 A;  2FF6 G;  1T2L A;  2KVK A;  3EH1 A;  5KYW B;  1T3Y A;  5FAF A;  1PD1 A;  1D4X G;  5KYW A;  3EFO A;  3EGX A;  1VKK A;  2FH2 A;  2FH1 A;  2VAC A;  3CIP G;  1P8X A;  2FF3 A;  1X67 A;  2W0I A;  1NMD G;  2FH4 A;  3A5L S;  3A5N S;  3A5O S;  1AK6 A;  1SVQ A;  1WM4 A;  4KED A;  4PKH B;  5DD2 A;  1EQY S;  3DAW B;  1M2V A;  3FFK A;  1C0F S;  1Q8G A;  2MOT A;  4KEE A;  3EGD B;  3EGD A;  1WFS A;  5HVK D;  1T44 G;  3CI5 G;  1HQZ 1;  1T3X A;  1C0G S;  5KYX B;  3EFO B;  1VFQ A;  5L6W C;  3EGX B;  5KYX A;  4CBW G;  3TU5 B;  2NUT A;  5KYU A;  1CFY A;  3CJB G;  1TVJ A;  5IVU A;  1SVY A;  1QPV A;  2LJ8 A;  4KEF A;  1JHW A;  3Q2B A;  2FH3 A;  2LXX A;  1NPH A;  1P8Z G;  1M2V B;  1KCQ A;  2XFA A;  4CBX G;  1V6F A;  1CNU A;  1M2O A;  1MDU A;  4Z94 G;  1NLV G;  3EG9 A;  5HVK B;  1Q8X A;  1H1V G;  2LLF A;  3EH2 A;  3FG7 A;  1COF A;  2NUT B;  5KYU B;  1TMW A;  1AHQ A;  1J72 A;  1PD0 A;  4PKI G;  1WNJ A;  2L72 A;  5KYY A;  2HD7 A;  1ESV S; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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