1AM9A

Human srebp-1a bound to ldl receptor promoter
Total Genus 34
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
34
sequence length
80
structure length
80
Chain Sequence
QSRGEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHKSKSLK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Co-crystal structure of sterol regulatory element binding protein 1a at 2.3 A resolution.
pubmed doi rcsb
molecule tags Transcription/dna
source organism Homo sapiens
molecule keywords DNA (5'-D(*TP*TP*GP*CP*AP*GP*TP*GP*GP*GP*GP*TP*GP*AP*TP*CP*T
total genus 34
structure length 80
sequence length 80
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 1997-06-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00010 HLH Helix-loop-helix DNA-binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.280.10 Few Secondary Structures Irregular MYOD Basic-Helix-Loop-Helix Domain, subunit B Helix-loop-helix DNA-binding domain 1am9A00
4ATIA 1MDYB 1AN4A 1NKPB 1A0AA 5I4ZA 1R05A 4AYAA 3U5VA 4F3LB 1NLWA 1AN2A 2YPBA 2QL2B 2YPAA 4ATHA 1AM9A 5EYOA 4H10B 1MDYA 2MH3A 1NKPA 2LFHA 4F3LA 5I50A 1HLOA 2QL2A 1NLWB 2YPBB 2YPAB 4ATKA 4H10A 1UKLC 3MUJA
chains in the Genus database with same CATH superfamily
4ATIA 1MDYB 1AN4A 1NKPB 1A0AA 5I4ZA 1R05A 4AYAA 3U5VA 4F3LB 1NLWA 1AN2A 2YPBA 2QL2B 2YPAA 4ATHA 1AM9A 5EYOA 4H10B 1MDYA 2MH3A 1NKPA 2LFHA 4F3LA 1ZZAA 5I50A 1HLOA 2QL2A 1NLWB 2YPBB 2YPAB 4ATKA 4H10A 1K1FA 1UKLC 3MUJA
chains in the Genus database with same CATH topology
4ATIA 1MDYB 1AN4A 1NKPB 1A0AA 5I4ZA 1R05A 4AYAA 3U5VA 4F3LB 1NLWA 1AN2A 2YPBA 2QL2B 2YPAA 4ATHA 1AM9A 5EYOA 4H10B 1MDYA 2MH3A 1NKPA 2LFHA 4F3LA 5I50A 1HLOA 2QL2A 1NLWB 2YPBB 2YPAB 4ATKA 4H10A 1UKLC 3MUJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4ATI A;  1MDY B;  1AN4 A;  1NKP B;  1A0A A;  5I4Z A;  1R05 A;  4AYA A;  3U5V A;  4F3L B;  1NLW A;  1AN2 A;  2YPB A;  2QL2 B;  2YPA A;  4ATH A;  1AM9 A;  5EYO A;  4H10 B;  1MDY A;  2MH3 A;  1NKP A;  2LFH A;  4F3L A;  5I50 A;  1HLO A;  2QL2 A;  1NLW B;  2YPB B;  2YPA B;  4ATK A;  4H10 A;  1UKL C;  3MUJ A; 
#chains in the Genus database with same CATH topology
 4ATI A;  1MDY B;  1AN4 A;  1NKP B;  1A0A A;  5I4Z A;  1R05 A;  4AYA A;  3U5V A;  4F3L B;  1NLW A;  1AN2 A;  2YPB A;  2QL2 B;  2YPA A;  4ATH A;  1AM9 A;  5EYO A;  4H10 B;  1MDY A;  2MH3 A;  1NKP A;  2LFH A;  4F3L A;  1ZZA A;  5I50 A;  1HLO A;  2QL2 A;  1NLW B;  2YPB B;  2YPA B;  4ATK A;  4H10 A;  1K1F A;  1UKL C;  3MUJ A; 
#chains in the Genus database with same CATH homology
 4ATI A;  1MDY B;  1AN4 A;  1NKP B;  1A0A A;  5I4Z A;  1R05 A;  4AYA A;  3U5V A;  4F3L B;  1NLW A;  1AN2 A;  2YPB A;  2QL2 B;  2YPA A;  4ATH A;  1AM9 A;  5EYO A;  4H10 B;  1MDY A;  2MH3 A;  1NKP A;  2LFH A;  4F3L A;  5I50 A;  1HLO A;  2QL2 A;  1NLW B;  2YPB B;  2YPA B;  4ATK A;  4H10 A;  1UKL C;  3MUJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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