1AMEA

Crystal structure of type iii antifreeze protein at 4 c
Total Genus 14
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
14
sequence length
66
structure length
66
Chain Sequence
ANQASVVANQLIPINTALTLVMMRSEVVTPVGIPAEDIPRLVSMQVNRAVPLGTTLMPDMVKGYAA
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Antifreeze protein
molecule keywords TYPE III ANTIFREEZE PROTEIN ISOFORM HPLC 12
publication title Structure of type III antifreeze protein at 277 K.
pubmed doi rcsb
source organism Macrozoarces americanus
total genus 14
structure length 66
sequence length 66
ec nomenclature
pdb deposition date 1997-06-13
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1210.10 Alpha Beta Alpha-Beta Complex Type Iii Antifreeze Protein Isoform Hplc 12 Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain 1ameA00
4IPJA 1B7JA 2WQPA 3FRNA 5MSIA 1B7KA 2ZDRA 1KDEA 1XUZA 1VLIA 3NLAA 9MSIA 2LX3A 1C89A 1MSJA 6AMEA 7MSIA 2JIAA 1AMEA 1OPSA 3QF6A 7AMEA 8MSIA 3G8RA 9AMEA 1XUUA 3CM4A 4NY6A 4IPIA 2SPGA 1JABA 4UR4A 1C8AA 6MSIA 2AMEA 1UCSA 4UR6A 2LX2A 1KDFA 1WVOA 1B7IA 3MSIA 1MSIA 4MSIA 1GZIA 1HG7A 4AMEA 3RDNA 2MSJA 2MSIA 1EKLA 8AMEA 3AMEA
chains in the Genus database with same CATH superfamily
4IPJA 1B7JA 2WQPA 3FRNA 5MSIA 1B7KA 2ZDRA 1KDEA 1XUZA 1VLIA 3K3SA 3NLAA 9MSIA 2LX3A 1C89A 1MSJA 6AMEA 7MSIA 2JIAA 1AMEA 1OPSA 3QF6A 7AMEA 8MSIA 3G8RA 9AMEA 1XUUA 3CM4A 4NY6A 4IPIA 3LAZA 2SPGA 1JABA 4UR4A 1C8AA 6MSIA 2AMEA 1UCSA 4UR6A 2LX2A 1KDFA 1WVOA 1B7IA 3MSIA 1MSIA 4MSIA 1GZIA 1HG7A 4AMEA 3RDNA 2MSJA 2MSIA 1EKLA 8AMEA 3AMEA
chains in the Genus database with same CATH topology
4IPJA 1B7JA 2WQPA 3FRNA 5MSIA 1B7KA 2ZDRA 1KDEA 1XUZA 1VLIA 3NLAA 9MSIA 2LX3A 1C89A 1MSJA 6AMEA 7MSIA 2JIAA 1AMEA 1OPSA 3QF6A 7AMEA 8MSIA 3G8RA 9AMEA 1XUUA 3CM4A 4NY6A 4IPIA 2SPGA 1JABA 4UR4A 1C8AA 6MSIA 2AMEA 1UCSA 4UR6A 2LX2A 1KDFA 1WVOA 1B7IA 3MSIA 1MSIA 4MSIA 1GZIA 1HG7A 4AMEA 3RDNA 2MSJA 2MSIA 1EKLA 8AMEA 3AMEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4IPJ A;  1B7J A;  2WQP A;  3FRN A;  5MSI A;  1B7K A;  2ZDR A;  1KDE A;  1XUZ A;  1VLI A;  3NLA A;  9MSI A;  2LX3 A;  1C89 A;  1MSJ A;  6AME A;  7MSI A;  2JIA A;  1AME A;  1OPS A;  3QF6 A;  7AME A;  8MSI A;  3G8R A;  9AME A;  1XUU A;  3CM4 A;  4NY6 A;  4IPI A;  2SPG A;  1JAB A;  4UR4 A;  1C8A A;  6MSI A;  2AME A;  1UCS A;  4UR6 A;  2LX2 A;  1KDF A;  1WVO A;  1B7I A;  3MSI A;  1MSI A;  4MSI A;  1GZI A;  1HG7 A;  4AME A;  3RDN A;  2MSJ A;  2MSI A;  1EKL A;  8AME A;  3AME A; 
#chains in the Genus database with same CATH topology
 4IPJ A;  1B7J A;  2WQP A;  3FRN A;  5MSI A;  1B7K A;  2ZDR A;  1KDE A;  1XUZ A;  1VLI A;  3K3S A;  3NLA A;  9MSI A;  2LX3 A;  1C89 A;  1MSJ A;  6AME A;  7MSI A;  2JIA A;  1AME A;  1OPS A;  3QF6 A;  7AME A;  8MSI A;  3G8R A;  9AME A;  1XUU A;  3CM4 A;  4NY6 A;  4IPI A;  3LAZ A;  2SPG A;  1JAB A;  4UR4 A;  1C8A A;  6MSI A;  2AME A;  1UCS A;  4UR6 A;  2LX2 A;  1KDF A;  1WVO A;  1B7I A;  3MSI A;  1MSI A;  4MSI A;  1GZI A;  1HG7 A;  4AME A;  3RDN A;  2MSJ A;  2MSI A;  1EKL A;  8AME A;  3AME A; 
#chains in the Genus database with same CATH homology
 4IPJ A;  1B7J A;  2WQP A;  3FRN A;  5MSI A;  1B7K A;  2ZDR A;  1KDE A;  1XUZ A;  1VLI A;  3NLA A;  9MSI A;  2LX3 A;  1C89 A;  1MSJ A;  6AME A;  7MSI A;  2JIA A;  1AME A;  1OPS A;  3QF6 A;  7AME A;  8MSI A;  3G8R A;  9AME A;  1XUU A;  3CM4 A;  4NY6 A;  4IPI A;  2SPG A;  1JAB A;  4UR4 A;  1C8A A;  6MSI A;  2AME A;  1UCS A;  4UR6 A;  2LX2 A;  1KDF A;  1WVO A;  1B7I A;  3MSI A;  1MSI A;  4MSI A;  1GZI A;  1HG7 A;  4AME A;  3RDN A;  2MSJ A;  2MSI A;  1EKL A;  8AME A;  3AME A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...