1AMIA

Steric and conformational features of the aconitase mechanism
Total Genus 301
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
301
sequence length
753
structure length
753
Chain Sequence
RAKVAMSHFEPHEYIRYDLLEKNIDIVRKRLNRPLTLSEKIVYGHLDDPANQEIERGKTYLRLRPDRVAMQDATAQMAMLQFISSGLPKVAVPSTIHCDHLIEAQLGGEKDLRRAKDINQEVYNFLATAGAKYGVGFWRPGSGIIHQIILENYAYPGVLLIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGMATICNMGAEIGATTSVFPYNHRMKKYLSKTGRADIANLADEFKDHLVPDSGCHYDQLIEINLSELKPHINGPFTPDLAHPVAEVGSVAEKEGWPLDIRVGLIGSCTNSSYEDMGRSAAVAKQALAHGLKCKSQFTITPGSEQIRATIERDGYAQVLRDVGGIVLANACGPCIGQWDRKDIKKGEKNTIVTSYNRNFTGRNDANPETHAFVTSPEIVTALAIAGTLKFNPETDFLTGKDGKKFKLEAPDADELPRAEFDPGQDTYQHPPKDSSGQRVDVSPTSQRLQLLEPFDKWDGKDLEDLQILIKVKGKCTTDHISAAGPWLKFRGHLDNISNNLLIGAINSENRKANSVRNAVTQEFGPVPDTARYYKQHGIRWVVIGDENYGEGSSREHSALEPRFLGGRAIITKSFARIHETNLKKQGLLPLTFADPADYNKIHPVDKLTIQGLKDFAPGKPLTCIIKHPNGTQETILLNHTFNETQIEWFRAGSALNRMKELQQK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Lyase(carbon-oxygen)
molecule keywords ACONITASE
publication title Steric and conformational features of the aconitase mechanism.
pubmed doi rcsb
source organism Bos taurus
total genus 301
structure length 753
sequence length 753
ec nomenclature ec 4.2.1.3: Aconitate hydratase.
pdb deposition date 1994-11-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00330 Aconitase Aconitase family (aconitate hydratase)
A PF00694 Aconitase_C Aconitase C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.20.19.10 Alpha Beta Alpha-Beta Barrel Aconitase; domain 4 Aconitase, domain 4 1amiA04
3.30.499.10 Alpha Beta 2-Layer Sandwich Aconitase; domain 3 Aconitase, domain 3 1amiA01
3.30.499.10 Alpha Beta 2-Layer Sandwich Aconitase; domain 3 Aconitase, domain 3 1amiA03
3.40.1060.10 Alpha Beta 3-Layer(aba) Sandwich Aconitase; Domain 2 Aconitase, Domain 2 1amiA02
1C96A 8ACNA 2B3YA 2B3XA 3VBAA 4KP2A 1C97A 1NITA 2HCUA 1NISA 1B0JA 4KP1A 1FGHA 3Q3WA 3SN2A 1AMJA 3H5EA 1AMIA 1B0KA 2PKPA 1ACOA 1B0MA 1V7LA 1L5JA 3SNPA 3H5JA 4NQYA 7ACNA 6ACNA 5ACNA 3H5HA
chains in the Genus database with same CATH superfamily
1C96A 8ACNA 2B3YA 2B3XA 3VBAA 4KP2A 1C97A 1NITA 2HCUA 1NISA 1B0JA 4KP1A 1FGHA 3Q3WA 3SN2A 1AMJA 3H5EA 1AMIA 1B0KA 2PKPA 1ACOA 1B0MA 1V7LA 1L5JA 3SNPA 3H5JA 4NQYA 7ACNA 6ACNA 5ACNA 3H5HA
chains in the Genus database with same CATH topology
1C96A 8ACNA 2B3YA 2B3XA 3VBAA 4KP2A 1C97A 1NITA 2HCUA 1NISA 1B0JA 4KP1A 1FGHA 3Q3WA 3SN2A 1AMJA 3H5EA 1AMIA 1B0KA 2PKPA 1ACOA 1B0MA 1V7LA 1L5JA 3SNPA 3H5JA 4NQYA 7ACNA 6ACNA 5ACNA 3H5HA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1C96 A;  8ACN A;  2B3Y A;  2B3X A;  3VBA A;  4KP2 A;  1C97 A;  1NIT A;  2HCU A;  1NIS A;  1B0J A;  4KP1 A;  1FGH A;  3Q3W A;  3SN2 A;  1AMJ A;  3H5E A;  1AMI A;  1B0K A;  2PKP A;  1ACO A;  1B0M A;  1V7L A;  1L5J A;  3SNP A;  3H5J A;  4NQY A;  7ACN A;  6ACN A;  5ACN A;  3H5H A; 
#chains in the Genus database with same CATH topology
 1C96 A;  8ACN A;  2B3Y A;  2B3X A;  3VBA A;  4KP2 A;  1C97 A;  1NIT A;  2HCU A;  1NIS A;  1B0J A;  4KP1 A;  1FGH A;  3Q3W A;  3SN2 A;  1AMJ A;  3H5E A;  1AMI A;  1B0K A;  2PKP A;  1ACO A;  1B0M A;  1V7L A;  1L5J A;  3SNP A;  3H5J A;  4NQY A;  7ACN A;  6ACN A;  5ACN A;  3H5H A; 
#chains in the Genus database with same CATH homology
 1C96 A;  8ACN A;  2B3Y A;  2B3X A;  3VBA A;  4KP2 A;  1C97 A;  1NIT A;  2HCU A;  1NIS A;  1B0J A;  4KP1 A;  1FGH A;  3Q3W A;  3SN2 A;  1AMJ A;  3H5E A;  1AMI A;  1B0K A;  2PKP A;  1ACO A;  1B0M A;  1V7L A;  1L5J A;  3SNP A;  3H5J A;  4NQY A;  7ACN A;  6ACN A;  5ACN A;  3H5H A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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