1AN4A

Structure and function of the b/hlh/z domain of usf
Total Genus 13
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
13
sequence length
65
structure length
65
Chain Sequence
MDEKRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNHR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transcription/dna
molecule keywords DNA (5'-D(*CP*AP*CP*CP*CP*GP*GP*TP*CP*AP*CP*GP*TP*GP*GP*CP*C
publication title Structure and function of the b/HLH/Z domain of USF.
pubmed rcsb
source organism Homo sapiens
total genus 13
structure length 65
sequence length 65
chains with identical sequence B
ec nomenclature
pdb deposition date 1997-03-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00010 HLH Helix-loop-helix DNA-binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.280.10 Few Secondary Structures Irregular MYOD Basic-Helix-Loop-Helix Domain, subunit B Helix-loop-helix DNA-binding domain 1an4A00
2YPBA 3U5VA 4F3LB 1R05A 2QL2B 5EYOA 4H10A 1UKLC 4ATIA 4ATKA 1NKPA 5I4ZA 2YPAB 2LFHA 1MDYB 1NLWB 1AN4A 2YPBB 1AM9A 2QL2A 4H10B 4F3LA 4AYAA 5I50A 2MH3A 1A0AA 4ATHA 1NKPB 3MUJA 2YPAA 1AN2A 1MDYA 1NLWA 1HLOA
chains in the Genus database with same CATH superfamily
2YPBA 3U5VA 4F3LB 1K1FA 1R05A 2QL2B 5EYOA 4H10A 1UKLC 4ATIA 1ZZAA 4ATKA 1NKPA 5I4ZA 2YPAB 2LFHA 1MDYB 1NLWB 1AN4A 2YPBB 1AM9A 2QL2A 4F3LA 4H10B 4AYAA 5I50A 2MH3A 1A0AA 4ATHA 1NKPB 3MUJA 2YPAA 1AN2A 1MDYA 1NLWA 1HLOA
chains in the Genus database with same CATH topology
2YPBA 3U5VA 4F3LB 1R05A 2QL2B 5EYOA 4H10A 1UKLC 4ATIA 4ATKA 1NKPA 5I4ZA 2YPAB 2LFHA 1MDYB 1NLWB 1AN4A 2YPBB 1AM9A 2QL2A 4H10B 4F3LA 4AYAA 5I50A 2MH3A 1A0AA 4ATHA 1NKPB 3MUJA 2YPAA 1AN2A 1MDYA 1NLWA 1HLOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2YPB A;  3U5V A;  4F3L B;  1R05 A;  2QL2 B;  5EYO A;  4H10 A;  1UKL C;  4ATI A;  4ATK A;  1NKP A;  5I4Z A;  2YPA B;  2LFH A;  1MDY B;  1NLW B;  1AN4 A;  2YPB B;  1AM9 A;  2QL2 A;  4H10 B;  4F3L A;  4AYA A;  5I50 A;  2MH3 A;  1A0A A;  4ATH A;  1NKP B;  3MUJ A;  2YPA A;  1AN2 A;  1MDY A;  1NLW A;  1HLO A; 
#chains in the Genus database with same CATH topology
 2YPB A;  3U5V A;  4F3L B;  1K1F A;  1R05 A;  2QL2 B;  5EYO A;  4H10 A;  1UKL C;  4ATI A;  1ZZA A;  4ATK A;  1NKP A;  5I4Z A;  2YPA B;  2LFH A;  1MDY B;  1NLW B;  1AN4 A;  2YPB B;  1AM9 A;  2QL2 A;  4F3L A;  4H10 B;  4AYA A;  5I50 A;  2MH3 A;  1A0A A;  4ATH A;  1NKP B;  3MUJ A;  2YPA A;  1AN2 A;  1MDY A;  1NLW A;  1HLO A; 
#chains in the Genus database with same CATH homology
 2YPB A;  3U5V A;  4F3L B;  1R05 A;  2QL2 B;  5EYO A;  4H10 A;  1UKL C;  4ATI A;  4ATK A;  1NKP A;  5I4Z A;  2YPA B;  2LFH A;  1MDY B;  1NLW B;  1AN4 A;  2YPB B;  1AM9 A;  2QL2 A;  4H10 B;  4F3L A;  4AYA A;  5I50 A;  2MH3 A;  1A0A A;  4ATH A;  1NKP B;  3MUJ A;  2YPA A;  1AN2 A;  1MDY A;  1NLW A;  1HLO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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