1AOAA

N-terminal actin-crosslinking domain from human fimbrin
Total Genus 78
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
78
sequence length
255
structure length
247
Chain Sequence
YSEEEKYAFVNWINKALENDPDCRHVIPMNPNTDDLFKAVGDGIVLCKMINLSVPDTIDERAINKKKLTPFIIQENLNLALNSASAIGCHVVNIGAEDLRAGKPHLVLGLLWQIIKIGLFADIELSRNEALTLEELMKLSPEELLLRWANFHLENSGWQKINNFSADIKDSKAYFHLLNQIAPKGQKEGEPRIDINMSGFNETDDLKRAESMLQQADKLGCRQFVTPADVVSGNPKLNLAFVANLFN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Actin-binding protein
molecule keywords T-FIMBRIN
publication title The structure of an actin-crosslinking domain from human fimbrin.
pubmed doi rcsb
total genus 78
structure length 247
sequence length 255
ec nomenclature
pdb deposition date 1997-06-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00307 CH Calponin homology (CH) domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.418.10 Mainly Alpha Orthogonal Bundle Actin-binding Protein, T-fimbrin; domain 1 Calponin-like domain 1aoaA01
1.10.418.10 Mainly Alpha Orthogonal Bundle Actin-binding Protein, T-fimbrin; domain 1 Calponin-like domain 1aoaA02
2EYIA 2K3SA 1RT8A 1DXXA 2L3GA 2EYNA 1V5KA 3JARM 2VZGB 2D87A 5A36A 1WJOA 2VZIB 1P5SA 2E9KA 3KY9A 3JALM 1VKAA 2D89A 4Q59A 1WYMA 1WYPA 4TXKA 2JV9A 2WA5A 3I6XA 2WA6A 3HOCA 1WYRA 1AOAA 1H67A 1WYLA 2DK9A 1MB8A 1WKUA 3REPB 4EDMA 4Q57B 3KMWB 2EE7A 1SH5A 4Q58A 1WYNA 1SH6A 4EDNA 2VZDA 1AA2A 2WFNA 3HOPA 5A37A 5J8EA 2K2RA 2D88A 2D85A 1WYQA 2WA7A 5A38A 3FERA 1TJTA 1WIXA 5BVRA 1PXYA 2YRNA 4TXIA 3F7PA 3HORA 3KMUB 1PA7A 5A4BA 2R8UA 1QAGA 1BKRA 2R0OA 1WYOA 4EDLA 1P2XA 2QJZA 1UJOA 2RR8A 1UEGA 3JAKM 2VZCA 1BHDA 2QJXA 5L0OA 3CO1A 4B7LA 2D86A
chains in the Genus database with same CATH superfamily
2EYIA 2K3SA 1RT8A 1DXXA 2L3GA 3VP7A 4DDPA 4LVRA 2EQOA 2EYNA 1V5KA 3JARM 2VZGB 2D87A 5A36A 1WJOA 2VZIB 1P5SA 2E9KA 3KY9A 3JALM 1VKAA 5FMUA 2D89A 4Q59A 2VE7C 1WYMA 1WYPA 2VE7A 4TXKA 2JV9A 2WA5A 3I6XA 2WA6A 3HOCA 1WYRA 1AOAA 1H67A 1WYLA 2DK9A 1MB8A 1WKUA 2WE6A 3REPB 4EDMA 2HL9A 4Q57B 3KMWB 2EE7A 1SH5A 4Q58A 1WYNA 2HKPA 1SH6A 4EDNA 2VZDA 1AA2A 2WFNA 3HOPA 5A37A 5J8EA 2K2RA 2D88A 2HL8A 2D85A 1WYQA 1EUVA 2WA7A 3FERA 5A38A 2WDTA 1TJTA 1WIXA 5BVRA 1PXYA 2YRNA 4TXIA 3F7PA 3HORA 3KMUB 1PA7A 5A4BA 2R8UA 1QAGA 1BKRA 2R0OA 1WYOA 4LVPA 4EDLA 1P2XA 2QJZA 2IGPA 1UJOA 2RR8A 5FMTA 1UEGA 3JAKM 2VZCA 1BHDA 2QJXA 5L0OA 3CO1A 3EAYA 4B7LA 2D86A
chains in the Genus database with same CATH topology
2EYIA 2K3SA 1RT8A 1DXXA 2L3GA 2EYNA 1V5KA 3JARM 2VZGB 2D87A 5A36A 1WJOA 2VZIB 1P5SA 2E9KA 3KY9A 3JALM 1VKAA 2D89A 4Q59A 1WYMA 1WYPA 4TXKA 2JV9A 2WA5A 3I6XA 2WA6A 3HOCA 1WYRA 1AOAA 1H67A 1WYLA 2DK9A 1MB8A 1WKUA 3REPB 4EDMA 4Q57B 3KMWB 2EE7A 1SH5A 4Q58A 1WYNA 1SH6A 4EDNA 2VZDA 1AA2A 2WFNA 3HOPA 5A37A 5J8EA 2K2RA 2D88A 2D85A 1WYQA 2WA7A 5A38A 3FERA 1TJTA 1WIXA 5BVRA 1PXYA 2YRNA 4TXIA 3F7PA 3HORA 3KMUB 1PA7A 5A4BA 2R8UA 1QAGA 1BKRA 2R0OA 1WYOA 4EDLA 1P2XA 2QJZA 1UJOA 2RR8A 1UEGA 3JAKM 2VZCA 1BHDA 2QJXA 5L0OA 3CO1A 4B7LA 2D86A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2EYI A;  2K3S A;  1RT8 A;  1DXX A;  2L3G A;  2EYN A;  1V5K A;  3JAR M;  2VZG B;  2D87 A;  5A36 A;  1WJO A;  2VZI B;  1P5S A;  2E9K A;  3KY9 A;  3JAL M;  1VKA A;  2D89 A;  4Q59 A;  1WYM A;  1WYP A;  4TXK A;  2JV9 A;  2WA5 A;  3I6X A;  2WA6 A;  3HOC A;  1WYR A;  1AOA A;  1H67 A;  1WYL A;  2DK9 A;  1MB8 A;  1WKU A;  3REP B;  4EDM A;  4Q57 B;  3KMW B;  2EE7 A;  1SH5 A;  4Q58 A;  1WYN A;  1SH6 A;  4EDN A;  2VZD A;  1AA2 A;  2WFN A;  3HOP A;  5A37 A;  5J8E A;  2K2R A;  2D88 A;  2D85 A;  1WYQ A;  2WA7 A;  5A38 A;  3FER A;  1TJT A;  1WIX A;  5BVR A;  1PXY A;  2YRN A;  4TXI A;  3F7P A;  3HOR A;  3KMU B;  1PA7 A;  5A4B A;  2R8U A;  1QAG A;  1BKR A;  2R0O A;  1WYO A;  4EDL A;  1P2X A;  2QJZ A;  1UJO A;  2RR8 A;  1UEG A;  3JAK M;  2VZC A;  1BHD A;  2QJX A;  5L0O A;  3CO1 A;  4B7L A;  2D86 A; 
#chains in the Genus database with same CATH topology
 2EYI A;  2K3S A;  1RT8 A;  1DXX A;  2L3G A;  3VP7 A;  4DDP A;  4LVR A;  2EQO A;  2EYN A;  1V5K A;  3JAR M;  2VZG B;  2D87 A;  5A36 A;  1WJO A;  2VZI B;  1P5S A;  2E9K A;  3KY9 A;  3JAL M;  1VKA A;  5FMU A;  2D89 A;  4Q59 A;  2VE7 C;  1WYM A;  1WYP A;  2VE7 A;  4TXK A;  2JV9 A;  2WA5 A;  3I6X A;  2WA6 A;  3HOC A;  1WYR A;  1AOA A;  1H67 A;  1WYL A;  2DK9 A;  1MB8 A;  1WKU A;  2WE6 A;  3REP B;  4EDM A;  2HL9 A;  4Q57 B;  3KMW B;  2EE7 A;  1SH5 A;  4Q58 A;  1WYN A;  2HKP A;  1SH6 A;  4EDN A;  2VZD A;  1AA2 A;  2WFN A;  3HOP A;  5A37 A;  5J8E A;  2K2R A;  2D88 A;  2HL8 A;  2D85 A;  1WYQ A;  1EUV A;  2WA7 A;  3FER A;  5A38 A;  2WDT A;  1TJT A;  1WIX A;  5BVR A;  1PXY A;  2YRN A;  4TXI A;  3F7P A;  3HOR A;  3KMU B;  1PA7 A;  5A4B A;  2R8U A;  1QAG A;  1BKR A;  2R0O A;  1WYO A;  4LVP A;  4EDL A;  1P2X A;  2QJZ A;  2IGP A;  1UJO A;  2RR8 A;  5FMT A;  1UEG A;  3JAK M;  2VZC A;  1BHD A;  2QJX A;  5L0O A;  3CO1 A;  3EAY A;  4B7L A;  2D86 A; 
#chains in the Genus database with same CATH homology
 2EYI A;  2K3S A;  1RT8 A;  1DXX A;  2L3G A;  2EYN A;  1V5K A;  3JAR M;  2VZG B;  2D87 A;  5A36 A;  1WJO A;  2VZI B;  1P5S A;  2E9K A;  3KY9 A;  3JAL M;  1VKA A;  2D89 A;  4Q59 A;  1WYM A;  1WYP A;  4TXK A;  2JV9 A;  2WA5 A;  3I6X A;  2WA6 A;  3HOC A;  1WYR A;  1AOA A;  1H67 A;  1WYL A;  2DK9 A;  1MB8 A;  1WKU A;  3REP B;  4EDM A;  4Q57 B;  3KMW B;  2EE7 A;  1SH5 A;  4Q58 A;  1WYN A;  1SH6 A;  4EDN A;  2VZD A;  1AA2 A;  2WFN A;  3HOP A;  5A37 A;  5J8E A;  2K2R A;  2D88 A;  2D85 A;  1WYQ A;  2WA7 A;  5A38 A;  3FER A;  1TJT A;  1WIX A;  5BVR A;  1PXY A;  2YRN A;  4TXI A;  3F7P A;  3HOR A;  3KMU B;  1PA7 A;  5A4B A;  2R8U A;  1QAG A;  1BKR A;  2R0O A;  1WYO A;  4EDL A;  1P2X A;  2QJZ A;  1UJO A;  2RR8 A;  1UEG A;  3JAK M;  2VZC A;  1BHD A;  2QJX A;  5L0O A;  3CO1 A;  4B7L A;  2D86 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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