1AOCA

Japanese horseshoe crab coagulogen
Total Genus 40
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
Knots found
sequence length
175
structure length
175
Chain Sequence
ADTNAPICLCDEPGVLGRTQIVTTEIKDKIEKAVEAVAQESGVSGRGFSIFSHHPVFRECGKYECRTVRPEHSRCYNFPPFTHFKSECPVSTRDCEPVFGYTVAGEFRVIVQAPRAGFRQCVWQHKCRFGSNSCGYNGRCTQQRSVVRLVTYNLEKDGFLCESFRTCCGCPCRSF
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Coagulation factor
molecule keywords COAGULOGEN
publication title Crystal structure of a coagulogen, the clotting protein from horseshoe crab: a structural homologue of nerve growth factor.
pubmed rcsb
total genus 40
structure length 175
sequence length 175
chains with identical sequence B
other databases KnotProt 2.0: K
ec nomenclature
pdb deposition date 1996-11-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02035 Coagulin Coagulin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.90.10 Mainly Beta Ribbon Cystine Knot Cytokines, subunit B Cystine-knot cytokines 1aocA00
1KLCA 4QHUC 2GH0C 4MIDA 1NYSB 1TZHV 4EC7A 1NYUB 4MQWA 4YCIC 1JPYA 1FL7A 3HH2A 5HI4A 3BUKA 1HRPA 1SGFB 1QFWA 4AY9B 2QCQA 1MKKA 5BQEA 1WQ9A 3SEKB 1BNDA 4LXRJ 4KZNA 3BK3A 4EFVA 2X1XE 3V2AA 5AEJA 1WWWV 1TFGA 5BQBA 1MKGA 2GOOA 1B8KA 2GNNA 5F3HI 3IJ2A 2BHKA 4BV4L 1ES7A 3QB4A 1FZVA 4LXSJ 1SG1A 1TGKA 1VPPV 2KD3A 4QCIC 1E9JA 4ZBNA 2H64A 3QTKA 5HHXA 3S1KV 1M4UA 1KTZA 3MJKA 2FJHV 2ARPA 2XV7A 1NT3A 3P9WA 1PDGA 1KATW 1BJ1V 1REUA 1VPFA 5FV1V 1HD4A 5F3BC 4FAOA 1TGJA 3KFDA 3BMPA 3EO1C 4AY9A 1CZ8V 2ARVA 5BQ8B 4EDWV 4UHYA 3EVSB 5HI5A 1XWDA 2R52A 4GLNE 1M4UL 1HCFA 4UI1A 2P6AA 1FLTV 2GYRA 2VPFA 2VXSA 2PJYA 2QJAA 1AOCA 2VWEA 1WQ8A 1B98A 5BQ8D 5HHDA 2QCWA 4KV5A 1LX5A 4UI2B 5HK5A 1QTYR 5HHVA 5HI3A 2IFGE 1HRPB 2QR0C 2QJ9A 5BPUA 3FUBB 3MJGA 1S4YB 2H62A 3BDYV 4XPJA 4WPBA 4UI0A 3B4VA 2TGIA 1HCNB 5FV2V 3V6BA 4HQUA 1MJVA 2B0UA 2ASKA 2C7WA 4HR9A 5JZ7A 1RV6V 5BQ8A 1AGQA 2GYZA 4EDXV 1B8MB 2FJGV 1WAQA 5BQCA 5E4GA 1ZKZA 3S1BV 1REWA 1BMPA 1BETA 1LXIA 4KXZA 4EAXA 2XACA 4MQWB 3JVFA 2X1WA 4MPLA 1FL7B 4N1DA 4QAFC 1TZIV 4HSAA 4ZFFC 3RJRA 1QFWB 4UHZA 5HK5E 1HCNA 5BQEB 1XWDB 1WQ9B 1BNDB 1BTGA 4GLSE 2QJBA 1DZ7A 1B8MA 4YCGC 2R53A 3E07A 2V5EB 1KLAA 4X1JA 5HHCA 4HQXA
chains in the Genus database with same CATH superfamily
1KLCA 4QHUC 2GH0C 4MIDA 1NYSB 1TZHV 4EC7A 1NYUB 4MQWA 4YCIC 1JPYA 1FL7A 3HH2A 5HI4A 3BUKA 1HRPA 1SGFB 1QFWA 4AY9B 2QCQA 1MKKA 5BQEA 1WQ9A 3SEKB 1BNDA 4LXRJ 4KZNA 3BK3A 4EFVA 2X1XE 3V2AA 5AEJA 1WWWV 1TFGA 5BQBA 1MKGA 2GOOA 1B8KA 2GNNA 5F3HI 3IJ2A 2BHKA 4BV4L 1ES7A 3QB4A 1FZVA 4LXSJ 1SG1A 1TGKA 1VPPV 2KD3A 4QCIC 1E9JA 4ZBNA 2H64A 3QTKA 5HHXA 3S1KV 1M4UA 1KTZA 3MJKA 2FJHV 2ARPA 2XV7A 1NT3A 3P9WA 1PDGA 1KATW 1BJ1V 1REUA 1VPFA 5FV1V 1HD4A 5F3BC 4FAOA 1TGJA 3KFDA 3BMPA 3EO1C 4AY9A 1CZ8V 2ARVA 5BQ8B 4EDWV 4UHYA 3EVSB 5HI5A 1XWDA 2R52A 4GLNE 1M4UL 1HCFA 4UI1A 2P6AA 1FLTV 2GYRA 2VPFA 2VXSA 2PJYA 2QJAA 1AOCA 2VWEA 1WQ8A 1B98A 5BQ8D 5HHDA 2QCWA 4KV5A 1LX5A 4UI2B 5HK5A 1QTYR 5HHVA 5HI3A 2IFGE 1HRPB 2QR0C 2QJ9A 5BPUA 3FUBB 3MJGA 1S4YB 2H62A 3BDYV 4XPJA 4WPBA 4UI0A 3B4VA 2TGIA 1HCNB 5FV2V 3V6BA 4HQUA 1MJVA 2B0UA 2ASKA 2C7WA 4HR9A 5JZ7A 1RV6V 5BQ8A 1AGQA 2GYZA 4EDXV 1B8MB 2FJGV 1WAQA 5BQCA 5E4GA 1ZKZA 3S1BV 1REWA 1BMPA 1BETA 1LXIA 4KXZA 4EAXA 2XACA 4MQWB 3JVFA 2X1WA 4MPLA 1FL7B 4N1DA 4QAFC 1TZIV 4HSAA 4ZFFC 3RJRA 1QFWB 4UHZA 5HK5E 1HCNA 5BQEB 1XWDB 1WQ9B 1BNDB 1BTGA 4GLSE 2QJBA 1DZ7A 1B8MA 4YCGC 2R53A 3E07A 2V5EB 1KLAA 4X1JA 5HHCA 4HQXA
chains in the Genus database with same CATH topology
1KLCA 4QHUC 2GH0C 4MIDA 1NYSB 1TZHV 4EC7A 1NYUB 4MQWA 4YCIC 1JPYA 1FL7A 3HH2A 5HI4A 3BUKA 1HRPA 1SGFB 1QFWA 4AY9B 2QCQA 1MKKA 5BQEA 1WQ9A 3SEKB 1BNDA 4LXRJ 4KZNA 3BK3A 4EFVA 2X1XE 3V2AA 5AEJA 1WWWV 1TFGA 5BQBA 1MKGA 2GOOA 1B8KA 2GNNA 5F3HI 3IJ2A 2BHKA 4BV4L 1ES7A 3QB4A 1FZVA 4LXSJ 1SG1A 1TGKA 1VPPV 2KD3A 4QCIC 1E9JA 4ZBNA 2H64A 3QTKA 5HHXA 3S1KV 1M4UA 1KTZA 3MJKA 2FJHV 2ARPA 2XV7A 1NT3A 3P9WA 1PDGA 1KATW 1BJ1V 1REUA 1VPFA 5FV1V 1HD4A 5F3BC 4FAOA 1TGJA 3KFDA 3BMPA 3EO1C 4AY9A 1CZ8V 2ARVA 5BQ8B 4EDWV 4UHYA 3EVSB 5HI5A 1XWDA 2R52A 4GLNE 1M4UL 1HCFA 4UI1A 2P6AA 1FLTV 2GYRA 2VPFA 2VXSA 2PJYA 2QJAA 1AOCA 2VWEA 1WQ8A 1B98A 5BQ8D 5HHDA 2QCWA 4KV5A 1LX5A 4UI2B 5HK5A 1QTYR 5HHVA 5HI3A 2IFGE 1HRPB 2QR0C 2QJ9A 5BPUA 3FUBB 3MJGA 1S4YB 2H62A 3BDYV 4XPJA 4WPBA 4UI0A 3B4VA 2TGIA 1HCNB 5FV2V 3V6BA 4HQUA 1MJVA 2B0UA 2ASKA 2C7WA 4HR9A 5JZ7A 1RV6V 5BQ8A 1AGQA 2GYZA 4EDXV 1B8MB 2FJGV 1WAQA 5BQCA 5E4GA 1ZKZA 3S1BV 1REWA 1BMPA 1BETA 1LXIA 4KXZA 4EAXA 2XACA 4MQWB 3JVFA 2X1WA 4MPLA 1FL7B 4N1DA 4QAFC 1TZIV 4HSAA 4ZFFC 3RJRA 1QFWB 4UHZA 5HK5E 1HCNA 5BQEB 1XWDB 1WQ9B 1BNDB 1BTGA 4GLSE 2QJBA 1DZ7A 1B8MA 4YCGC 2R53A 3E07A 2V5EB 1KLAA 4X1JA 5HHCA 4HQXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1KLC A;  4QHU C;  2GH0 C;  4MID A;  1NYS B;  1TZH V;  4EC7 A;  1NYU B;  4MQW A;  4YCI C;  1JPY A;  1FL7 A;  3HH2 A;  5HI4 A;  3BUK A;  1HRP A;  1SGF B;  1QFW A;  4AY9 B;  2QCQ A;  1MKK A;  5BQE A;  1WQ9 A;  3SEK B;  1BND A;  4LXR J;  4KZN A;  3BK3 A;  4EFV A;  2X1X E;  3V2A A;  5AEJ A;  1WWW V;  1TFG A;  5BQB A;  1MKG A;  2GOO A;  1B8K A;  2GNN A;  5F3H I;  3IJ2 A;  2BHK A;  4BV4 L;  1ES7 A;  3QB4 A;  1FZV A;  4LXS J;  1SG1 A;  1TGK A;  1VPP V;  2KD3 A;  4QCI C;  1E9J A;  4ZBN A;  2H64 A;  3QTK A;  5HHX A;  3S1K V;  1M4U A;  1KTZ A;  3MJK A;  2FJH V;  2ARP A;  2XV7 A;  1NT3 A;  3P9W A;  1PDG A;  1KAT W;  1BJ1 V;  1REU A;  1VPF A;  5FV1 V;  1HD4 A;  5F3B C;  4FAO A;  1TGJ A;  3KFD A;  3BMP A;  3EO1 C;  4AY9 A;  1CZ8 V;  2ARV A;  5BQ8 B;  4EDW V;  4UHY A;  3EVS B;  5HI5 A;  1XWD A;  2R52 A;  4GLN E;  1M4U L;  1HCF A;  4UI1 A;  2P6A A;  1FLT V;  2GYR A;  2VPF A;  2VXS A;  2PJY A;  2QJA A;  1AOC A;  2VWE A;  1WQ8 A;  1B98 A;  5BQ8 D;  5HHD A;  2QCW A;  4KV5 A;  1LX5 A;  4UI2 B;  5HK5 A;  1QTY R;  5HHV A;  5HI3 A;  2IFG E;  1HRP B;  2QR0 C;  2QJ9 A;  5BPU A;  3FUB B;  3MJG A;  1S4Y B;  2H62 A;  3BDY V;  4XPJ A;  4WPB A;  4UI0 A;  3B4V A;  2TGI A;  1HCN B;  5FV2 V;  3V6B A;  4HQU A;  1MJV A;  2B0U A;  2ASK A;  2C7W A;  4HR9 A;  5JZ7 A;  1RV6 V;  5BQ8 A;  1AGQ A;  2GYZ A;  4EDX V;  1B8M B;  2FJG V;  1WAQ A;  5BQC A;  5E4G A;  1ZKZ A;  3S1B V;  1REW A;  1BMP A;  1BET A;  1LXI A;  4KXZ A;  4EAX A;  2XAC A;  4MQW B;  3JVF A;  2X1W A;  4MPL A;  1FL7 B;  4N1D A;  4QAF C;  1TZI V;  4HSA A;  4ZFF C;  3RJR A;  1QFW B;  4UHZ A;  5HK5 E;  1HCN A;  5BQE B;  1XWD B;  1WQ9 B;  1BND B;  1BTG A;  4GLS E;  2QJB A;  1DZ7 A;  1B8M A;  4YCG C;  2R53 A;  3E07 A;  2V5E B;  1KLA A;  4X1J A;  5HHC A;  4HQX A; 
#chains in the Genus database with same CATH topology
 1KLC A;  4QHU C;  2GH0 C;  4MID A;  1NYS B;  1TZH V;  4EC7 A;  1NYU B;  4MQW A;  4YCI C;  1JPY A;  1FL7 A;  3HH2 A;  5HI4 A;  3BUK A;  1HRP A;  1SGF B;  1QFW A;  4AY9 B;  2QCQ A;  1MKK A;  5BQE A;  1WQ9 A;  3SEK B;  1BND A;  4LXR J;  4KZN A;  3BK3 A;  4EFV A;  2X1X E;  3V2A A;  5AEJ A;  1WWW V;  1TFG A;  5BQB A;  1MKG A;  2GOO A;  1B8K A;  2GNN A;  5F3H I;  3IJ2 A;  2BHK A;  4BV4 L;  1ES7 A;  3QB4 A;  1FZV A;  4LXS J;  1SG1 A;  1TGK A;  1VPP V;  2KD3 A;  4QCI C;  1E9J A;  4ZBN A;  2H64 A;  3QTK A;  5HHX A;  3S1K V;  1M4U A;  1KTZ A;  3MJK A;  2FJH V;  2ARP A;  2XV7 A;  1NT3 A;  3P9W A;  1PDG A;  1KAT W;  1BJ1 V;  1REU A;  1VPF A;  5FV1 V;  1HD4 A;  5F3B C;  4FAO A;  1TGJ A;  3KFD A;  3BMP A;  3EO1 C;  4AY9 A;  1CZ8 V;  2ARV A;  5BQ8 B;  4EDW V;  4UHY A;  3EVS B;  5HI5 A;  1XWD A;  2R52 A;  4GLN E;  1M4U L;  1HCF A;  4UI1 A;  2P6A A;  1FLT V;  2GYR A;  2VPF A;  2VXS A;  2PJY A;  2QJA A;  1AOC A;  2VWE A;  1WQ8 A;  1B98 A;  5BQ8 D;  5HHD A;  2QCW A;  4KV5 A;  1LX5 A;  4UI2 B;  5HK5 A;  1QTY R;  5HHV A;  5HI3 A;  2IFG E;  1HRP B;  2QR0 C;  2QJ9 A;  5BPU A;  3FUB B;  3MJG A;  1S4Y B;  2H62 A;  3BDY V;  4XPJ A;  4WPB A;  4UI0 A;  3B4V A;  2TGI A;  1HCN B;  5FV2 V;  3V6B A;  4HQU A;  1MJV A;  2B0U A;  2ASK A;  2C7W A;  4HR9 A;  5JZ7 A;  1RV6 V;  5BQ8 A;  1AGQ A;  2GYZ A;  4EDX V;  1B8M B;  2FJG V;  1WAQ A;  5BQC A;  5E4G A;  1ZKZ A;  3S1B V;  1REW A;  1BMP A;  1BET A;  1LXI A;  4KXZ A;  4EAX A;  2XAC A;  4MQW B;  3JVF A;  2X1W A;  4MPL A;  1FL7 B;  4N1D A;  4QAF C;  1TZI V;  4HSA A;  4ZFF C;  3RJR A;  1QFW B;  4UHZ A;  5HK5 E;  1HCN A;  5BQE B;  1XWD B;  1WQ9 B;  1BND B;  1BTG A;  4GLS E;  2QJB A;  1DZ7 A;  1B8M A;  4YCG C;  2R53 A;  3E07 A;  2V5E B;  1KLA A;  4X1J A;  5HHC A;  4HQX A; 
#chains in the Genus database with same CATH homology
 1KLC A;  4QHU C;  2GH0 C;  4MID A;  1NYS B;  1TZH V;  4EC7 A;  1NYU B;  4MQW A;  4YCI C;  1JPY A;  1FL7 A;  3HH2 A;  5HI4 A;  3BUK A;  1HRP A;  1SGF B;  1QFW A;  4AY9 B;  2QCQ A;  1MKK A;  5BQE A;  1WQ9 A;  3SEK B;  1BND A;  4LXR J;  4KZN A;  3BK3 A;  4EFV A;  2X1X E;  3V2A A;  5AEJ A;  1WWW V;  1TFG A;  5BQB A;  1MKG A;  2GOO A;  1B8K A;  2GNN A;  5F3H I;  3IJ2 A;  2BHK A;  4BV4 L;  1ES7 A;  3QB4 A;  1FZV A;  4LXS J;  1SG1 A;  1TGK A;  1VPP V;  2KD3 A;  4QCI C;  1E9J A;  4ZBN A;  2H64 A;  3QTK A;  5HHX A;  3S1K V;  1M4U A;  1KTZ A;  3MJK A;  2FJH V;  2ARP A;  2XV7 A;  1NT3 A;  3P9W A;  1PDG A;  1KAT W;  1BJ1 V;  1REU A;  1VPF A;  5FV1 V;  1HD4 A;  5F3B C;  4FAO A;  1TGJ A;  3KFD A;  3BMP A;  3EO1 C;  4AY9 A;  1CZ8 V;  2ARV A;  5BQ8 B;  4EDW V;  4UHY A;  3EVS B;  5HI5 A;  1XWD A;  2R52 A;  4GLN E;  1M4U L;  1HCF A;  4UI1 A;  2P6A A;  1FLT V;  2GYR A;  2VPF A;  2VXS A;  2PJY A;  2QJA A;  1AOC A;  2VWE A;  1WQ8 A;  1B98 A;  5BQ8 D;  5HHD A;  2QCW A;  4KV5 A;  1LX5 A;  4UI2 B;  5HK5 A;  1QTY R;  5HHV A;  5HI3 A;  2IFG E;  1HRP B;  2QR0 C;  2QJ9 A;  5BPU A;  3FUB B;  3MJG A;  1S4Y B;  2H62 A;  3BDY V;  4XPJ A;  4WPB A;  4UI0 A;  3B4V A;  2TGI A;  1HCN B;  5FV2 V;  3V6B A;  4HQU A;  1MJV A;  2B0U A;  2ASK A;  2C7W A;  4HR9 A;  5JZ7 A;  1RV6 V;  5BQ8 A;  1AGQ A;  2GYZ A;  4EDX V;  1B8M B;  2FJG V;  1WAQ A;  5BQC A;  5E4G A;  1ZKZ A;  3S1B V;  1REW A;  1BMP A;  1BET A;  1LXI A;  4KXZ A;  4EAX A;  2XAC A;  4MQW B;  3JVF A;  2X1W A;  4MPL A;  1FL7 B;  4N1D A;  4QAF C;  1TZI V;  4HSA A;  4ZFF C;  3RJR A;  1QFW B;  4UHZ A;  5HK5 E;  1HCN A;  5BQE B;  1XWD B;  1WQ9 B;  1BND B;  1BTG A;  4GLS E;  2QJB A;  1DZ7 A;  1B8M A;  4YCG C;  2R53 A;  3E07 A;  2V5E B;  1KLA A;  4X1J A;  5HHC A;  4HQX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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