1AQEA

Crystal structure of the y73e mutant of cytochrome c of class iii (ambler) 26 kd
Total Genus 24
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
110
structure length
110
Chain Sequence
TFEIPESVTMSPKQFEGYTPKKGDVTFNHASHMDIACQQCHHTVPDTYTIESCMTEGCHDNIKERTEISSVERTFHTTKDSEKSCVGCHRELKRQGPSDAPLACNSCHVQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Electron transport
molecule keywords CYTOCHROME C3
publication title Structural and kinetic studies of the Y73E mutant of octaheme cytochrome c3 (Mr = 26 000) from Desulfovibrio desulfuricans Norway.
pubmed doi rcsb
source organism Desulfomicrobium norvegicum
total genus 24
structure length 110
sequence length 110
ec nomenclature
pdb deposition date 1997-07-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02085 Cytochrom_CIII Class III cytochrome C family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.10.10 Alpha Beta Alpha-Beta Complex Cytochrome C3 Cytochrome C3 1aqeA00
1F22A 1UP9A 1J0PA 2E84A 2LZZA 1CZJA 3H34A 1KWJA 2A3MA 4HBFA 3OUEA 2CY3A 3CAOA 1RWJA 19HCA 2YXCA 2BPNA 2YYWA 3OV0A 3H33A 2YYXA 1IT1A 1EHJA 2N91A 1MDVA 4HB6A 1QN1A 1H29A 1DUWA 1QN0A 2MZ9A 2CDVA 1WR5A 2KSUA 1HH5A 2CTHA 3OUQA 3SJ1X 1OS6A 1W7OA 1GYOA 2KMYA 1WADA 1I77A 2A3PA 1Z1NX 1LM2A 2CYMA 1GMBA 3SELX 2CVCA 2Z47A 1UPDA 3SJ0X 4HDLA 1L3OA 3H4NA 2LDOA 1J0OA 1A2IA 2EWIA 1OFWA 2EWUA 2EWKA 2BQ4A 3SJ4X 1GM4A 2FFNA 3CYRA 1AQEA 4HC3A 4HAJA 3BXUA 1GWSA 3CARA 1NEWA 1OFYA 4HB8A
chains in the Genus database with same CATH superfamily
1F22A 1UP9A 1J0PA 2E84A 2LZZA 1CZJA 3H34A 1KWJA 2A3MA 4HBFA 3OUEA 2CY3A 3CAOA 1RWJA 19HCA 2YXCA 2BPNA 2YYWA 3OV0A 3H33A 2YYXA 1IT1A 1EHJA 2N91A 1MDVA 4HB6A 1QN1A 1H29A 1DUWA 1QN0A 2MZ9A 2CDVA 1WR5A 2KSUA 1HH5A 2CTHA 3OUQA 3SJ1X 1OS6A 1W7OA 1GYOA 2KMYA 1WADA 1I77A 2A3PA 1Z1NX 1LM2A 2CYMA 1GMBA 3SELX 2CVCA 2Z47A 1UPDA 3SJ0X 4HDLA 1L3OA 3H4NA 2LDOA 1J0OA 1A2IA 2EWIA 1OFWA 2EWUA 2EWKA 2BQ4A 3SJ4X 1GM4A 2FFNA 3CYRA 1AQEA 4HC3A 4HAJA 3BXUA 1GWSA 3CARA 1NEWA 1OFYA 4HB8A
chains in the Genus database with same CATH topology
1F22A 1UP9A 1J0PA 2E84A 2LZZA 1CZJA 3H34A 1KWJA 2A3MA 4HBFA 3OUEA 2CY3A 3CAOA 1RWJA 19HCA 2YXCA 2BPNA 2YYWA 3OV0A 3H33A 2YYXA 1IT1A 1EHJA 2N91A 1MDVA 4HB6A 1QN1A 1H29A 1DUWA 1QN0A 2MZ9A 2CDVA 1WR5A 2KSUA 1HH5A 2CTHA 3OUQA 3SJ1X 1OS6A 1W7OA 1GYOA 2KMYA 1WADA 1I77A 2A3PA 1Z1NX 1LM2A 2CYMA 1GMBA 3SELX 2CVCA 2Z47A 1UPDA 3SJ0X 4HDLA 1L3OA 3H4NA 2LDOA 1J0OA 1A2IA 2EWIA 1OFWA 2EWUA 2EWKA 2BQ4A 3SJ4X 1GM4A 2FFNA 3CYRA 1AQEA 4HC3A 4HAJA 3BXUA 1GWSA 3CARA 1NEWA 1OFYA 4HB8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1F22 A;  1UP9 A;  1J0P A;  2E84 A;  2LZZ A;  1CZJ A;  3H34 A;  1KWJ A;  2A3M A;  4HBF A;  3OUE A;  2CY3 A;  3CAO A;  1RWJ A;  19HC A;  2YXC A;  2BPN A;  2YYW A;  3OV0 A;  3H33 A;  2YYX A;  1IT1 A;  1EHJ A;  2N91 A;  1MDV A;  4HB6 A;  1QN1 A;  1H29 A;  1DUW A;  1QN0 A;  2MZ9 A;  2CDV A;  1WR5 A;  2KSU A;  1HH5 A;  2CTH A;  3OUQ A;  3SJ1 X;  1OS6 A;  1W7O A;  1GYO A;  2KMY A;  1WAD A;  1I77 A;  2A3P A;  1Z1N X;  1LM2 A;  2CYM A;  1GMB A;  3SEL X;  2CVC A;  2Z47 A;  1UPD A;  3SJ0 X;  4HDL A;  1L3O A;  3H4N A;  2LDO A;  1J0O A;  1A2I A;  2EWI A;  1OFW A;  2EWU A;  2EWK A;  2BQ4 A;  3SJ4 X;  1GM4 A;  2FFN A;  3CYR A;  1AQE A;  4HC3 A;  4HAJ A;  3BXU A;  1GWS A;  3CAR A;  1NEW A;  1OFY A;  4HB8 A; 
#chains in the Genus database with same CATH topology
 1F22 A;  1UP9 A;  1J0P A;  2E84 A;  2LZZ A;  1CZJ A;  3H34 A;  1KWJ A;  2A3M A;  4HBF A;  3OUE A;  2CY3 A;  3CAO A;  1RWJ A;  19HC A;  2YXC A;  2BPN A;  2YYW A;  3OV0 A;  3H33 A;  2YYX A;  1IT1 A;  1EHJ A;  2N91 A;  1MDV A;  4HB6 A;  1QN1 A;  1H29 A;  1DUW A;  1QN0 A;  2MZ9 A;  2CDV A;  1WR5 A;  2KSU A;  1HH5 A;  2CTH A;  3OUQ A;  3SJ1 X;  1OS6 A;  1W7O A;  1GYO A;  2KMY A;  1WAD A;  1I77 A;  2A3P A;  1Z1N X;  1LM2 A;  2CYM A;  1GMB A;  3SEL X;  2CVC A;  2Z47 A;  1UPD A;  3SJ0 X;  4HDL A;  1L3O A;  3H4N A;  2LDO A;  1J0O A;  1A2I A;  2EWI A;  1OFW A;  2EWU A;  2EWK A;  2BQ4 A;  3SJ4 X;  1GM4 A;  2FFN A;  3CYR A;  1AQE A;  4HC3 A;  4HAJ A;  3BXU A;  1GWS A;  3CAR A;  1NEW A;  1OFY A;  4HB8 A; 
#chains in the Genus database with same CATH homology
 1F22 A;  1UP9 A;  1J0P A;  2E84 A;  2LZZ A;  1CZJ A;  3H34 A;  1KWJ A;  2A3M A;  4HBF A;  3OUE A;  2CY3 A;  3CAO A;  1RWJ A;  19HC A;  2YXC A;  2BPN A;  2YYW A;  3OV0 A;  3H33 A;  2YYX A;  1IT1 A;  1EHJ A;  2N91 A;  1MDV A;  4HB6 A;  1QN1 A;  1H29 A;  1DUW A;  1QN0 A;  2MZ9 A;  2CDV A;  1WR5 A;  2KSU A;  1HH5 A;  2CTH A;  3OUQ A;  3SJ1 X;  1OS6 A;  1W7O A;  1GYO A;  2KMY A;  1WAD A;  1I77 A;  2A3P A;  1Z1N X;  1LM2 A;  2CYM A;  1GMB A;  3SEL X;  2CVC A;  2Z47 A;  1UPD A;  3SJ0 X;  4HDL A;  1L3O A;  3H4N A;  2LDO A;  1J0O A;  1A2I A;  2EWI A;  1OFW A;  2EWU A;  2EWK A;  2BQ4 A;  3SJ4 X;  1GM4 A;  2FFN A;  3CYR A;  1AQE A;  4HC3 A;  4HAJ A;  3BXU A;  1GWS A;  3CAR A;  1NEW A;  1OFY A;  4HB8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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