1AR94

P1/mahoney poliovirus, single site mutant h2142y
Total Genus 3
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
3
sequence length
68
structure length
60
Chain Sequence
GAQVSSQKVGAHESTINYTTINYYRDSASNAASKQDFSQDPSKFTEPIKDVLIKTAPMLN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural studies of poliovirus mutants that overcome receptor defects.
pubmed doi rcsb
molecule tags Virus
source organism Human poliovirus 1
molecule keywords P1/MAHONEY POLIOVIRUS
total genus 3
structure length 60
sequence length 68
ec nomenclature ec 2.7.7.48: RNA-directed RNA polymerase.
pdb deposition date 1997-08-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
4 PF02226 Pico_P1A Picornavirus coat protein (VP4)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.80.10 Few Secondary Structures Irregular Rhinovirus 14, subunit 4 Picornavirus coat protein VP4 1ar9400
1VBB4 1AR64 1VBD4 1VBC4 1RUH4 4PDWD 1HRV4 1HXS4 1VBE4 2R044 2RS34 1EV14 1PVC4 1VRH4 1AL24 1D4M4 2RS14 2RR14 1RUJ4 1AR84 3JBG4 2HWC4 1BEV4 1RUI4 1VBA4 4Q4X4 1MQTD 1NA1D 1R084 1RUC4 1K5MD 4Q4Y4 1PIV4 1RUD4 2R074 1OOPD 1PO14 2RS54 1PO24 1EAH4 1AR74 1POV0 1AR94 1COV4 2HWB4 2RMU4 4Q4W4 1Z7S4 4Q4V4 1RMU4 1H8TD 3J8F4 1NCQD 1R094 1RUE4 2PLV4 3JD74 1RHI4 1HRI4 2X5ID 4RHV4 1RVF4 2R064 4GB34 1RUF4 2RM24 1ASJ4 1RUG4
chains in the Genus database with same CATH superfamily
3VR9A 3AE4A 2WU5A 1AR64 2B76A 1HRV4 1XI1A 1VBE4 3ABVA 4YT0A 1EV14 1KFYA 1AL24 2RS14 2RR14 1RUI4 1VBA4 2WDQA 4YTMA 1K5MD 2RS54 3AEAA 1AR74 3P4QA 3AEFA 4Q4V4 2PY5A 1RMU4 3J8F4 3JD74 1RHI4 1HRI4 1ZOYA 2X5ID 2WQYA 2EX3A 2R064 1VBB4 3AE7A 3P4RA 3VR8A 4PDWD 3AEEA 1L0VA 2H89A 3JBG4 3VRAA 2R7FA 3AE9A 2HWC4 1BEV4 3AE5A 2FBWA 3AEBA 1NA1D 3AE2A 3AE1A 3AE6A 2R074 1PO14 3GQKA 2PYJA 4Q4W4 1COV4 3AEDA 2H88A 1R094 3AE3A 2RM24 1YQ4A 1XHXA 1VBD4 1VBC4 1XHZA 1HXS4 4YSYA 2R044 3SFEA 1PVC4 1VRH4 1RUJ4 1AR84 3SFDA 3VRBA 2WS3A 1PIV4 1RUD4 1OOPD 4YSXA 2HWB4 4KX6A 4YXDA 1ZP0A 2WU2A 3SUCA 1Z7S4 2WDVA 1H8TD 1NCQD 1RUE4 4RHV4 3FI7A 1RVF4 1ASJ4 1RUG4 2WDRA 3GQHA 3P4PA 5C2TA 1KF6A 1RUH4 4YSZA 2RS34 1D4M4 2PZSA 2PYLA 3P4SA 4Q4X4 1MQTD 1R084 1RUC4 2ACZA 2WP9A 3CIRA 4Q4Y4 2PW9A 3AEGA 3AECA 1PO24 1EAH4 1POV0 4YTNA 1AR94 1NENA 2RMU4 5C3JA 4YTPA 2PLV4 1NEKA 3AE8A 1YQ3A 4GB34 1RUF4
chains in the Genus database with same CATH topology
1VBB4 1AR64 1VBD4 1VBC4 1RUH4 4PDWD 1HRV4 1HXS4 1VBE4 2R044 2RS34 1EV14 1PVC4 1VRH4 1AL24 1D4M4 2RS14 2RR14 1RUJ4 1AR84 3JBG4 2HWC4 1BEV4 1RUI4 1VBA4 4Q4X4 1MQTD 1NA1D 1R084 1RUC4 1K5MD 4Q4Y4 1PIV4 1RUD4 2R074 1OOPD 1PO14 2RS54 1PO24 1EAH4 1AR74 1POV0 1AR94 1COV4 2HWB4 2RMU4 4Q4W4 1Z7S4 4Q4V4 1RMU4 1H8TD 3J8F4 1NCQD 1R094 1RUE4 2PLV4 3JD74 1RHI4 1HRI4 2X5ID 4RHV4 1RVF4 2R064 4GB34 1RUF4 2RM24 1ASJ4 1RUG4
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1VBB 4;  1AR6 4;  1VBD 4;  1VBC 4;  1RUH 4;  4PDW D;  1HRV 4;  1HXS 4;  1VBE 4;  2R04 4;  2RS3 4;  1EV1 4;  1PVC 4;  1VRH 4;  1AL2 4;  1D4M 4;  2RS1 4;  2RR1 4;  1RUJ 4;  1AR8 4;  3JBG 4;  2HWC 4;  1BEV 4;  1RUI 4;  1VBA 4;  4Q4X 4;  1MQT D;  1NA1 D;  1R08 4;  1RUC 4;  1K5M D;  4Q4Y 4;  1PIV 4;  1RUD 4;  2R07 4;  1OOP D;  1PO1 4;  2RS5 4;  1PO2 4;  1EAH 4;  1AR7 4;  1POV 0;  1AR9 4;  1COV 4;  2HWB 4;  2RMU 4;  4Q4W 4;  1Z7S 4;  4Q4V 4;  1RMU 4;  1H8T D;  3J8F 4;  1NCQ D;  1R09 4;  1RUE 4;  2PLV 4;  3JD7 4;  1RHI 4;  1HRI 4;  2X5I D;  4RHV 4;  1RVF 4;  2R06 4;  4GB3 4;  1RUF 4;  2RM2 4;  1ASJ 4;  1RUG 4; 
#chains in the Genus database with same CATH topology
 3VR9 A;  3AE4 A;  2WU5 A;  1AR6 4;  2B76 A;  1HRV 4;  1XI1 A;  1VBE 4;  3ABV A;  4YT0 A;  1EV1 4;  1KFY A;  1AL2 4;  2RS1 4;  2RR1 4;  1RUI 4;  1VBA 4;  2WDQ A;  4YTM A;  1K5M D;  2RS5 4;  3AEA A;  1AR7 4;  3P4Q A;  3AEF A;  4Q4V 4;  2PY5 A;  1RMU 4;  3J8F 4;  3JD7 4;  1RHI 4;  1HRI 4;  1ZOY A;  2X5I D;  2WQY A;  2EX3 A;  2R06 4;  1VBB 4;  3AE7 A;  3P4R A;  3VR8 A;  4PDW D;  3AEE A;  1L0V A;  2H89 A;  3JBG 4;  3VRA A;  2R7F A;  3AE9 A;  2HWC 4;  1BEV 4;  3AE5 A;  2FBW A;  3AEB A;  1NA1 D;  3AE2 A;  3AE1 A;  3AE6 A;  2R07 4;  1PO1 4;  3GQK A;  2PYJ A;  4Q4W 4;  1COV 4;  3AED A;  2H88 A;  1R09 4;  3AE3 A;  2RM2 4;  1YQ4 A;  1XHX A;  1VBD 4;  1VBC 4;  1XHZ A;  1HXS 4;  4YSY A;  2R04 4;  3SFE A;  1PVC 4;  1VRH 4;  1RUJ 4;  1AR8 4;  3SFD A;  3VRB A;  2WS3 A;  1PIV 4;  1RUD 4;  1OOP D;  4YSX A;  2HWB 4;  4KX6 A;  4YXD A;  1ZP0 A;  2WU2 A;  3SUC A;  1Z7S 4;  2WDV A;  1H8T D;  1NCQ D;  1RUE 4;  4RHV 4;  3FI7 A;  1RVF 4;  1ASJ 4;  1RUG 4;  2WDR A;  3GQH A;  3P4P A;  5C2T A;  1KF6 A;  1RUH 4;  4YSZ A;  2RS3 4;  1D4M 4;  2PZS A;  2PYL A;  3P4S A;  4Q4X 4;  1MQT D;  1R08 4;  1RUC 4;  2ACZ A;  2WP9 A;  3CIR A;  4Q4Y 4;  2PW9 A;  3AEG A;  3AEC A;  1PO2 4;  1EAH 4;  1POV 0;  4YTN A;  1AR9 4;  1NEN A;  2RMU 4;  5C3J A;  4YTP A;  2PLV 4;  1NEK A;  3AE8 A;  1YQ3 A;  4GB3 4;  1RUF 4; 
#chains in the Genus database with same CATH homology
 1VBB 4;  1AR6 4;  1VBD 4;  1VBC 4;  1RUH 4;  4PDW D;  1HRV 4;  1HXS 4;  1VBE 4;  2R04 4;  2RS3 4;  1EV1 4;  1PVC 4;  1VRH 4;  1AL2 4;  1D4M 4;  2RS1 4;  2RR1 4;  1RUJ 4;  1AR8 4;  3JBG 4;  2HWC 4;  1BEV 4;  1RUI 4;  1VBA 4;  4Q4X 4;  1MQT D;  1NA1 D;  1R08 4;  1RUC 4;  1K5M D;  4Q4Y 4;  1PIV 4;  1RUD 4;  2R07 4;  1OOP D;  1PO1 4;  2RS5 4;  1PO2 4;  1EAH 4;  1AR7 4;  1POV 0;  1AR9 4;  1COV 4;  2HWB 4;  2RMU 4;  4Q4W 4;  1Z7S 4;  4Q4V 4;  1RMU 4;  1H8T D;  3J8F 4;  1NCQ D;  1R09 4;  1RUE 4;  2PLV 4;  3JD7 4;  1RHI 4;  1HRI 4;  2X5I D;  4RHV 4;  1RVF 4;  2R06 4;  4GB3 4;  1RUF 4;  2RM2 4;  1ASJ 4;  1RUG 4; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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