1ATND

Atomic structure of the actin:dnase i complex
Total Genus 84
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
84
sequence length
260
structure length
258
Chain Sequence
LKIAAFNIRTFGETKMSNATLASYIVRIVRRYDIVLIQEVRDSHLVAVGKLLDYLNQDDPNTYHYVVSEPLGRNSYKERYLFLFRPNKVSVLDTYQYDDGCCGNDSFSREPAVVKFSSHSTKVKEFAIVALHSAPSDAVAEINSLYDVYLDVQQKWHLNDVMLMGDFNADCSYVTSSQWSSIRLRTSSTFQWLIPDSADTTATSTNCAYDRIVVAGSLLQSSVVPGSAAPFDFQAAYGLSNEMALAISDHYPVEVTLT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Endodeoxyribonuclease
molecule keywords ACTIN
publication title Atomic structure of the actin:DNase I complex.
pubmed doi rcsb
total genus 84
structure length 258
sequence length 260
ec nomenclature ec 3.1.21.1: Deoxyribonuclease I.
pdb deposition date 1991-03-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF03372 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.10.10 Alpha Beta 4-Layer Sandwich Deoxyribonuclease I; Chain A Endonuclease/exonuclease/phosphatase 1atnD00
2DDTA 5INOA 5DFJA 4F1RA 3G00A 3G4TA 1DE8A 5HT2A 2IMQX 5CFEA 3NGNA 4L1YA 4A9CA 2A3ZB 4QH9A 2O3CA 3G3CA 4L21A 3U8UA 4FPVA 3NGQA 4IEMA 3I41A 3N9VA 4B5HA 1WDUA 3G38A 2XSWA 5INQA 3NGOA 1AKOA 3I48A 5J3SA 3W2XA 4GYZA 3W2YA 3G0RA 2JC5A 3I5VA 2JC4A 1NTFA 3W3DB 4PUQA 3L1WA 4LNDA 5J3PA 3MPRA 4GZ1A 3TEBA 5DV4A 1DNKA 2A40B 5DG0A 2A41B 5INPA 4C1RA 5DV2A 4F1IA 4RUWA 3GA6A 4F1HA 2V0SA 2O3HA 2VOAA 1I9ZA 1YJHA 2DDRA 2EI9A 5CFGA 4B5FA 4JG3A 5DFFA 5J8NA 4GEWA 4FVAA 2J63A 4QHDA 4GZ0A 3WCXA 5INNA 2F2FB 4B5GA 2A42B 4GZ2A 4AWNA 4CMLA 1Y21A 5EWTA 5INKA 3FZIA 3G8VA 5INLA 4CMNA 4L1ZA 1SI6X 3G6SA 4QHEA 4F1HB 3NR8A 4B5MA 2D1KB 3G3YA 4L20A 3G2DA 5DFHA 4K6LF 2UYRX 2ISIA 3G1KA 3G0AA 1SR4B 1BIXA 3K55A 3G91A 2DNJA 5J3ZA 2DDSA 3G2CA 1ZWXA 3CJCD 5DFIA 5A7JA 4B5JA 5INMA 4B5IA 1VYBA 1DE9A 1E9NA 1ATND 3MTCA 1DEWA 2V0RA 5J42A 1I9YA 5A7IA 2F1NA 3I46A 3DNIA 1HD7A
chains in the Genus database with same CATH superfamily
2DDTA 5INOA 5DFJA 4F1RA 3G00A 3G4TA 1DE8A 5HT2A 2IMQX 5CFEA 3NGNA 4L1YA 4A9CA 2A3ZB 4QH9A 2O3CA 3G3CA 4L21A 3U8UA 4FPVA 3NGQA 4IEMA 3I41A 3N9VA 4B5HA 1WDUA 3G38A 2XSWA 5INQA 3NGOA 1AKOA 3I48A 5J3SA 3W2XA 4GYZA 3W2YA 3G0RA 2JC5A 3I5VA 2JC4A 1NTFA 3W3DB 4PUQA 3L1WA 4LNDA 5J3PA 3MPRA 4GZ1A 3TEBA 5DV4A 1DNKA 2A40B 5DG0A 2A41B 5INPA 4C1RA 5DV2A 4F1IA 4RUWA 3GA6A 4F1HA 2V0SA 2O3HA 2VOAA 1I9ZA 1YJHA 2DDRA 2EI9A 5CFGA 4B5FA 4JG3A 5DFFA 5J8NA 4GEWA 4FVAA 2J63A 4QHDA 4GZ0A 3WCXA 5INNA 2F2FB 4B5GA 2A42B 4GZ2A 4AWNA 4CMLA 1Y21A 5EWTA 5INKA 3FZIA 3G8VA 5INLA 4CMNA 4L1ZA 1SI6X 3G6SA 4QHEA 4F1HB 3NR8A 4B5MA 2D1KB 3G3YA 4L20A 3G2DA 5DFHA 4K6LF 2UYRX 2ISIA 3G1KA 3G0AA 1SR4B 1BIXA 3K55A 3G91A 2DNJA 5J3ZA 2DDSA 3G2CA 1ZWXA 3CJCD 5DFIA 5A7JA 4B5JA 5INMA 4B5IA 1VYBA 1DE9A 1E9NA 1ATND 3MTCA 1DEWA 2V0RA 5J42A 1I9YA 5A7IA 2F1NA 3I46A 3DNIA 1HD7A
chains in the Genus database with same CATH topology
2DDTA 5INOA 5DFJA 4F1RA 3G00A 3G4TA 1DE8A 5HT2A 2IMQX 5CFEA 3NGNA 4L1YA 4A9CA 2A3ZB 4QH9A 2O3CA 3G3CA 4L21A 3U8UA 4FPVA 3NGQA 4IEMA 3I41A 3N9VA 4B5HA 1WDUA 3G38A 2XSWA 5INQA 3NGOA 1AKOA 3I48A 5J3SA 3W2XA 4GYZA 3W2YA 3G0RA 2JC5A 3I5VA 2JC4A 1NTFA 3W3DB 4PUQA 3L1WA 4LNDA 5J3PA 3MPRA 4GZ1A 3TEBA 5DV4A 1DNKA 2A40B 5DG0A 2A41B 5INPA 4C1RA 5DV2A 4F1IA 4RUWA 3GA6A 4F1HA 2V0SA 2O3HA 2VOAA 1I9ZA 1YJHA 2DDRA 2EI9A 5CFGA 4B5FA 4JG3A 5DFFA 5J8NA 4GEWA 4FVAA 2J63A 4QHDA 4GZ0A 3WCXA 5INNA 2F2FB 4B5GA 2A42B 4GZ2A 4AWNA 4CMLA 1Y21A 5EWTA 5INKA 3FZIA 3G8VA 5INLA 4CMNA 4L1ZA 1SI6X 3G6SA 4QHEA 4F1HB 3NR8A 4B5MA 2D1KB 3G3YA 4L20A 3G2DA 5DFHA 4K6LF 2UYRX 2ISIA 3G1KA 3G0AA 1SR4B 1BIXA 3K55A 3G91A 2DNJA 5J3ZA 2DDSA 3G2CA 1ZWXA 3CJCD 5DFIA 5A7JA 4B5JA 5INMA 4B5IA 1VYBA 1DE9A 1E9NA 1ATND 3MTCA 1DEWA 2V0RA 5J42A 1I9YA 5A7IA 2F1NA 3I46A 3DNIA 1HD7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2DDT A;  5INO A;  5DFJ A;  4F1R A;  3G00 A;  3G4T A;  1DE8 A;  5HT2 A;  2IMQ X;  5CFE A;  3NGN A;  4L1Y A;  4A9C A;  2A3Z B;  4QH9 A;  2O3C A;  3G3C A;  4L21 A;  3U8U A;  4FPV A;  3NGQ A;  4IEM A;  3I41 A;  3N9V A;  4B5H A;  1WDU A;  3G38 A;  2XSW A;  5INQ A;  3NGO A;  1AKO A;  3I48 A;  5J3S A;  3W2X A;  4GYZ A;  3W2Y A;  3G0R A;  2JC5 A;  3I5V A;  2JC4 A;  1NTF A;  3W3D B;  4PUQ A;  3L1W A;  4LND A;  5J3P A;  3MPR A;  4GZ1 A;  3TEB A;  5DV4 A;  1DNK A;  2A40 B;  5DG0 A;  2A41 B;  5INP A;  4C1R A;  5DV2 A;  4F1I A;  4RUW A;  3GA6 A;  4F1H A;  2V0S A;  2O3H A;  2VOA A;  1I9Z A;  1YJH A;  2DDR A;  2EI9 A;  5CFG A;  4B5F A;  4JG3 A;  5DFF A;  5J8N A;  4GEW A;  4FVA A;  2J63 A;  4QHD A;  4GZ0 A;  3WCX A;  5INN A;  2F2F B;  4B5G A;  2A42 B;  4GZ2 A;  4AWN A;  4CML A;  1Y21 A;  5EWT A;  5INK A;  3FZI A;  3G8V A;  5INL A;  4CMN A;  4L1Z A;  1SI6 X;  3G6S A;  4QHE A;  4F1H B;  3NR8 A;  4B5M A;  2D1K B;  3G3Y A;  4L20 A;  3G2D A;  5DFH A;  4K6L F;  2UYR X;  2ISI A;  3G1K A;  3G0A A;  1SR4 B;  1BIX A;  3K55 A;  3G91 A;  2DNJ A;  5J3Z A;  2DDS A;  3G2C A;  1ZWX A;  3CJC D;  5DFI A;  5A7J A;  4B5J A;  5INM A;  4B5I A;  1VYB A;  1DE9 A;  1E9N A;  1ATN D;  3MTC A;  1DEW A;  2V0R A;  5J42 A;  1I9Y A;  5A7I A;  2F1N A;  3I46 A;  3DNI A;  1HD7 A; 
#chains in the Genus database with same CATH topology
 2DDT A;  5INO A;  5DFJ A;  4F1R A;  3G00 A;  3G4T A;  1DE8 A;  5HT2 A;  2IMQ X;  5CFE A;  3NGN A;  4L1Y A;  4A9C A;  2A3Z B;  4QH9 A;  2O3C A;  3G3C A;  4L21 A;  3U8U A;  4FPV A;  3NGQ A;  4IEM A;  3I41 A;  3N9V A;  4B5H A;  1WDU A;  3G38 A;  2XSW A;  5INQ A;  3NGO A;  1AKO A;  3I48 A;  5J3S A;  3W2X A;  4GYZ A;  3W2Y A;  3G0R A;  2JC5 A;  3I5V A;  2JC4 A;  1NTF A;  3W3D B;  4PUQ A;  3L1W A;  4LND A;  5J3P A;  3MPR A;  4GZ1 A;  3TEB A;  5DV4 A;  1DNK A;  2A40 B;  5DG0 A;  2A41 B;  5INP A;  4C1R A;  5DV2 A;  4F1I A;  4RUW A;  3GA6 A;  4F1H A;  2V0S A;  2O3H A;  2VOA A;  1I9Z A;  1YJH A;  2DDR A;  2EI9 A;  5CFG A;  4B5F A;  4JG3 A;  5DFF A;  5J8N A;  4GEW A;  4FVA A;  2J63 A;  4QHD A;  4GZ0 A;  3WCX A;  5INN A;  2F2F B;  4B5G A;  2A42 B;  4GZ2 A;  4AWN A;  4CML A;  1Y21 A;  5EWT A;  5INK A;  3FZI A;  3G8V A;  5INL A;  4CMN A;  4L1Z A;  1SI6 X;  3G6S A;  4QHE A;  4F1H B;  3NR8 A;  4B5M A;  2D1K B;  3G3Y A;  4L20 A;  3G2D A;  5DFH A;  4K6L F;  2UYR X;  2ISI A;  3G1K A;  3G0A A;  1SR4 B;  1BIX A;  3K55 A;  3G91 A;  2DNJ A;  5J3Z A;  2DDS A;  3G2C A;  1ZWX A;  3CJC D;  5DFI A;  5A7J A;  4B5J A;  5INM A;  4B5I A;  1VYB A;  1DE9 A;  1E9N A;  1ATN D;  3MTC A;  1DEW A;  2V0R A;  5J42 A;  1I9Y A;  5A7I A;  2F1N A;  3I46 A;  3DNI A;  1HD7 A; 
#chains in the Genus database with same CATH homology
 2DDT A;  5INO A;  5DFJ A;  4F1R A;  3G00 A;  3G4T A;  1DE8 A;  5HT2 A;  2IMQ X;  5CFE A;  3NGN A;  4L1Y A;  4A9C A;  2A3Z B;  4QH9 A;  2O3C A;  3G3C A;  4L21 A;  3U8U A;  4FPV A;  3NGQ A;  4IEM A;  3I41 A;  3N9V A;  4B5H A;  1WDU A;  3G38 A;  2XSW A;  5INQ A;  3NGO A;  1AKO A;  3I48 A;  5J3S A;  3W2X A;  4GYZ A;  3W2Y A;  3G0R A;  2JC5 A;  3I5V A;  2JC4 A;  1NTF A;  3W3D B;  4PUQ A;  3L1W A;  4LND A;  5J3P A;  3MPR A;  4GZ1 A;  3TEB A;  5DV4 A;  1DNK A;  2A40 B;  5DG0 A;  2A41 B;  5INP A;  4C1R A;  5DV2 A;  4F1I A;  4RUW A;  3GA6 A;  4F1H A;  2V0S A;  2O3H A;  2VOA A;  1I9Z A;  1YJH A;  2DDR A;  2EI9 A;  5CFG A;  4B5F A;  4JG3 A;  5DFF A;  5J8N A;  4GEW A;  4FVA A;  2J63 A;  4QHD A;  4GZ0 A;  3WCX A;  5INN A;  2F2F B;  4B5G A;  2A42 B;  4GZ2 A;  4AWN A;  4CML A;  1Y21 A;  5EWT A;  5INK A;  3FZI A;  3G8V A;  5INL A;  4CMN A;  4L1Z A;  1SI6 X;  3G6S A;  4QHE A;  4F1H B;  3NR8 A;  4B5M A;  2D1K B;  3G3Y A;  4L20 A;  3G2D A;  5DFH A;  4K6L F;  2UYR X;  2ISI A;  3G1K A;  3G0A A;  1SR4 B;  1BIX A;  3K55 A;  3G91 A;  2DNJ A;  5J3Z A;  2DDS A;  3G2C A;  1ZWX A;  3CJC D;  5DFI A;  5A7J A;  4B5J A;  5INM A;  4B5I A;  1VYB A;  1DE9 A;  1E9N A;  1ATN D;  3MTC A;  1DEW A;  2V0R A;  5J42 A;  1I9Y A;  5A7I A;  2F1N A;  3I46 A;  3DNI A;  1HD7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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